- 2013
- Published
Subnuclear relocalization and silencing of a chromosomal region by an ectopic ribosomal DNA repeat
Jakociunas, T., Domange Jordö, M. E., Mebarek, M. A., Bünner, C. M., Hansen, J. V., Oddershede, L. B. & Thon, Genevieve, 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 47, p. E4465-E4473 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Two portable recombination enhancers direct donor choice in fission yeast heterochromatin
Jakociunas, T., Holm, L. R., Hansen, J. V., Trusina, Ala & Thon, Genevieve, 2013, In: P L o S Genetics. 9, 10, 14 p., e1003762.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomics and genetics of Sulfolobus islandicus LAL14/1, a model hyperthermophilic archaeon
Jaubert, C., Danioux, C., Oberto, J., Cortez, D., Bize, A., Krupovic, M., She, Q., Forterre, P., Prangishvili, D. & Sezonov, G., 2013, In: Open Biology. 3, 4, 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana
Jensen, M. K., Lindemose, Søren, Masi, F. D., Reimer, J. J., Nielsen, M., Perera, V., Workman, C. T., Turck, F., Grant, M. R., Mundy, J., Petersen, Morten & Skriver, Karen, 2013, In: FEBS Open Bio. 3, p. 321-327 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Solution properties of the archaeal CRISPR DNA repeat-binding homeodomain protein Cbp2
Kenchappa, C., Heiðarsson, P. O., Kragelund, Birthe Brandt, Garrett, Roger Antony & Poulsen, F., 2013, In: Nucleic Acids Research. 41, 5, p. 3424-3435 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cyclic peptide inhibitors of the β-sliding clamp in Staphylococcus aureus
Kjelstrup, S., Hansen, P. M. P., Thomsen, Line Elnif, Hansen, Paul Robert & Løbner-Olesen, Anders, 2013, In: P L o S One. 8, 9, 13 p., e72273.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Protein dielectric constants determined from NMR chemical shift perturbations
Kukic, P., Farrell, D., McIntosh, L. P., García-Moreno E., B., Jensen, K. S., Toleikis, Z., Teilum, Kaare & Nielsen, J. E., 2013, In: Journal of the American Chemical Society. 135, 45, p. 16968–16976 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Concerted action of the Ubiquitin-Fusion Degradation Protein 1 (Ufd1) and Sumo-Targeted Ubiquitin Ligases (STUbLs) in the DNA-damage response
Køhler, J. B., Jørgensen, M. L. M., Beinoraite, G., Thorsen, M. & Thon, Genevieve, 2013, In: P L o S One. 8, 11, 15 p., e80442.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A novel carboxyl-terminal protease derived from Paenibacillus lautus CHN26 exhibiting high activities at multiple sites of substrates
Li, Y., Pan, Y., She, Q. & Chen, L., 2013, In: B M C Biotechnology. 13, 13 p., 89.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Knockouts of RecA-Like proteins RadC1 and RadC2 have distinct responses to DNA damage agents in Sulfolobus islandicus
Liang, P., Han, W., Huang, Q., Li, Y., Ni, J., She, Q. & Shen, Y., 2013, In: Journal of Genetics and Genomics. 40, 10, p. 533-542 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Structure, function and networks of transcription factors involved in abiotic stress responses
Lindemose, Søren, O'Shea, Charlotte, Jensen, M. K. & Skriver, Karen, 2013, In: International Journal of Molecular Sciences (Online). 14, 3, p. 5842-78 37 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Physical mapping and cloning of RAD56
Mathiasen, D. P., Gallina, I., Germann, S. M., Hamou, W., Eléouët, M., Thodberg, S., Eckert-Boulet, N., Game, J. & Lisby, Michael, 25 Apr 2013, In: Gene. 519, 1, p. 182-186 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Discovery and seminal developments in the CRISPR field
Mojica, F. J. M. & Garrett, Roger Antony, 2013, CRISPR-Cas Systems: RNA-mediated Adaptive Immunity in Bacteria and Archaea. Barrangou, R. & van der Oost, J. (eds.). Springer VS, p. 1-31 31 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
RNAi screening for characterisation of ER-associated degradation pathways in mammalian cells
Månsson, M. D. J., 2013, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
The role of C/EBPa in PD-1+ CD4+ T cells & modulation of RNR activity prolongs survival of mice with AML
Norrie, I. C., 2013, Department of Biology, Faculty of Science, University of Copenhagen. 118 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Novel insights into gene regulation of the rudivirus SIRV2 infecting Sulfolobus cells
Okutan, E., Deng, Ling, Mirlashari, S., Uldahl, K., Halim, M., Liu, C., Garrett, Roger Antony, She, Q. & Peng, Xu, 2013, In: R N A Biology. 10, 5, p. 1-11 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse
Orlando, L. A. A., Ginolhac, A., Zhang, G., Froese, D., Albrechtsen, A., Stiller, M., Schubert, M., Cappellini, E., Petersen, B., Moltke, I., Johnson, P. L. F., Fumagalli, M., Mouatt, J. T. V., Raghavan, M., Korneliussen, T. S., Malaspinas, A. S., Vogt, J., Szklarczyk, D. M., Kelstrup, C., Vinther, J. & 36 others, , 4 Jul 2013, In: Nature. 499, 7456, p. 74-78 5 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Genetic determinants of PAM-dependent DNA targeting and pre-crRNA processing in Sulfolobus islandicus
Peng, W., Li, H., Hallstrøm, S., Peng, N., Liang, Y. X. & She, Q., 2013, In: R N A Biology. 10, 5, p. 1-11 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Volume of Hsp90 ligand binding and the unfolding phase diagram as a function of pressure and temperature
Petrauskas, V., Gylyte, J., Toleikis, Z., Cimmperman, P. & Matulis, D., 2013, In: European Biophysics Journal. 42, 5, p. 355-362 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Transcriptome responses to combinations of stresses in Arabidopsis
Rasmussen, S., Barah, P., Suarez Rodriguez, M. C., Bressendorff, Simon, Friis, P., Costantino, P., Bones, A. M., Nielsen, H. B. & Mundy, J., 2013, In: Plant Physiology. 161, 4, p. 1783-1794 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Transcriptomic analysis of the SSV2 infection of Sulfolobus solfataricus with and without the integrative plasmid pSSVi
Ren, Y., She, Q. & Huang, L., 2013, In: Virology. 441, 2, p. 126-134 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Exposure to Cr(VI) induces organ dependent MSI in two loci related with photophosphorylation and with glutamine metabolism
Rodriguez, E., Azevedo de Silva, R., Remédios, C., Almeida, T., Fernandes, P. & Santos, C., 2013, In: Journal of Plant Physiology. 170, 5, p. 534-538 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Specificity and function of Archaeal DNA replication initiator proteins
Samson, R., Xu, Y., Gadelha, C., Stone, T., Faqiri, J., Li, D., Qin, N., Pu, F., Liang, Y., She, Q. & Bell, S., 2013, In: Cell Reports. 3, 2, p. 485-496 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome Sequence of a Novel Archaeal Fusellovirus Assembled from the Metagenome of a Mexican Hot Spring
Servin-Garciduenas, L. E., Peng, Xu, Garrett, Roger Antony & Martinez-Romero, E., 2013, In: Genome Announcements. 1, p. 1-2 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome Sequence of a Novel Archaeal Rudivirus Recovered from a Mexican Hot Spring
Servín-Garcidueñas, L., Peng, Xu, Garrett, Roger Antony & Martínez-Romero, E., 2013, In: Genome Announcements. 1, 1, p. 1-2 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome Sequence of the Acidophilic Bacterium Acidocella sp. Strain MX-AZ02
Servín-Garcidueñas, L. E., Garrett, Roger Antony, Amils, R. & Martínez-Romero, E., 2013, In: Genome Announcements. 1, 1, p. 1-2 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Protospacer recognition motifs: Mixed identities and functional diversity
Shah, S. A., Erdmann, S., Mojica, F. J. M. & Garrett, Roger Antony, 2013, In: R N A Biology. 10, 5, p. 1-9 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Archaeal type II toxin-antitoxins
Shah, S. A. & Garrett, Roger Antony, 2013, Prokaryotic toxin-antitoxins. Gerdes, K. (ed.). Springer, p. 225-238 14 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Characterising the CRISPR immune system in Archaea using genome sequence analysis
Shah, S. A., 2013, Department of Biology, Faculty of Science, University of Copenhagen. 219 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Molecular cloning of a novel bioH gene from an environmental metagenome encoding a carboxylesterase with exceptional tolerance to organic solvents
Shi, Y., Pan, Y., Li, B., He, W., She, Q. & Chen, L., 2013, In: B M C Biotechnology. 13, 11 p., 13.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rapid selection of Plasmodium falciparum chloroquine resistance transporter gene and multidrug resistance gene-1 haplotypes associated with past chloroquine and present artemether-lumefantrine use in Inhambane District, southern Mozambique
Thomsen, T. T., Madsen, L. B., Hansson, Helle Smedegaard, Tomás, E. V. E., Charlwood, D., Bygbjerg, Ib Christian & Alifrangis, Michael, Mar 2013, In: American Journal of Tropical Medicine and Hygiene. 88, 3, p. 536-41 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Biology, biodiversity and application potential of thermophilic viruses
Uldahl, K. B. & Peng, Xu, 2013, Thermophilic Microbes in Environmental and Industrial Biotechnology: Biotechnology of Thermophiles. Satyanarayana, T., Littlechild, J. & Kawarabayasi, Y. (eds.). Springer, p. 271-304 34 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Genetic manipulation in Sulfolobus islandicus and functional analysis of DNA repair genes
Zhang, C., Tian, B., Li, S., Ao, X., Dalgaard, K., Gökce, S., Liang, Y. & She, Q., 2013, In: Biochemical Society Transactions. 41, 1, p. 405-410 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Molecular cloning and antimicrobial activity of enterolysin A and helveticin J of bacteriolysins from metagenome of Chinese traditional fermented foods
Zhang, T., Pan, Y., Li, B., Ou, J., Zhang, J., Chen, Y., Peng, Xu & Chen, L., 2013, In: Food Control. 31, 2, p. 499-507 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2012
- Published
Cyclin-dependent kinase suppression by WEE1 kinase protects the genome through control of replication initiation and nucleotide consumption
Beck, H., Nähse-Kumpf, V., Larsen, Marie Sofie Yoo, O'Hanlon, K. A., Patzke, S., Holmberg, Christian, Mejlvang, J., Groth, Anja, Nielsen, Olaf, Syljuåsen, R. G. & Sørensen, Claus Storgaard, 2012, In: Molecular and Cellular Biology. 32, 20, p. 4226-4236 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Lack of the RNA chaperone Hfq attenuates pathogenicity of several Escherichia coli pathotypes towards Caenorhabditis elegans
Bojer, M. S., Jakobsen, H., Struve, C., Krogfelt, K. A. & Løbner-Olesen, Anders, 2012, In: Microbes and Infection. 14, 12, p. 1034-1039 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Immunity in the moss Physcomitrella patens
Bressendorff, Simon, 2012, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Modulation of CRISPR locus transcription by the repeat-binding protein Cbp1 in Sulfolobus
Deng, Ling, Kenchappa, C. S., Peng, Xu, She, Q. & Garrett, Roger Antony, 2012, In: Nucleic Acids Research. 40, 6, p. 2470-2480 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
MRN1 implicates chromatin remodeling complexes and architectural factors in mRNA maturation.
Düring, L., Thorsen, M., Petersen, D., Køster, B., Jensen, T. H. & Holmberg, Steen, 2012, In: P L o S One. 7, 9, 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Optimization of ordered plasmid assembly by gap repair in Saccharomyces cerevisiae
Eckert-Boulet, N. V., Pedersen, M. L., Krogh, B. O. & Lisby, Michael, 2012, In: Yeast. 29, 8, p. 323-334 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
On the misgivings of anthropomorphic consensus polling in defining the complexity of life
Egel, Richard, 2012, In: Journal of Biomolecular Structure & Dynamics. 29, 4, p. 615-616 2 p.Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
Selective and hyperactive uptake of foreign DNA by adaptive immune systems of an archaeon via two distinct mechanisms: [plus] Corrigendum
Erdmann, S. & Garrett, Roger Antony, 2012, In: Molecular Microbiology. 85, 6, p. 1044-1056 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Crystal structure of ATVORF273, a new fold for a thermo- and acido-stable protein from the Acidianus two-tailed virus
Felisberto-Rodrigues, C., Blangy, S., Goulet, A., Vestergaard, G. A., Cambillau, C., Garrett, Roger Antony & Ortiz-Lombardía, M., 2012, In: P L o S One. 7, 10, 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Receptor-like kinase complexes in plant innate immunity
Greeff, M. C., Roux, M. E., Mundy, J. & Petersen, Morten, 2012, In: Frontiers in Plant Science. 3, 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae
Henriksen, P., Wagner, S. A., Weinert, B. T., Sharma, S., Bacinskaja, G., Rehman, M., Juffer, A. H., Walther, T. C., Lisby, Michael & Choudhary, Chunaram, 2012, In: Molecular & Cellular Proteomics. 11, 11, p. 1510-1522 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
New romance between RNA degradation pathways: Mmi1 and RNAi meet on heterochromatic islands
Holm, L. R. & Thon, Genevieve, 2012, In: E M B O Journal. 31, p. 2242 - 2243 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Replication: DNA Building Block Synthesis On Demand
Holmberg, Christian & Nielsen, Olaf, 2012, In: Current Biology. 22, 8, p. R271-R272 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dissection of the functional domains of an archaeal holliday junction helicase
Hong, Y., Chu, M., Li, Y., Ni, J., Sheng, D., Hou, G., She, Q. & Shen, Y., 2012, In: D N A Repair. 11, 2, p. 102-111 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An archaeal protein evolutionarily conserved in prokaryotes is a zinc-dependent metalloprotease
Hu, Y., Peng, N., Han, W., Mei, Y., Chen, Z., Feng, X., Liang, Y. X. & She, Q., 2012, In: Bioscience Reports. 32, p. 609-618 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Guidelines for the use and interpretation of assays for monitoring autophagy
Klionsky, D. J., Abdalla, F. C., Abeliovich, H., Farkas, T., Frankel, Lisa, Høyer-Hansen, M., Jäätteä, M., Lund, Anders H., Olsson, S. & Petersen, Morten, 2012, In: Autophagy. 8, 4, p. 445-544 100 p.Research output: Contribution to journal › Review › Research › peer-review
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Receptor-like kinase complexes in plant innate immunity
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MAP kinase cascades in Arabidopsis innate immunity
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relax: the analysis of biomolecular kinetics and thermodynamics using NMR relaxation dispersion data
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Regulatory sequence-based discovery of anti-defense genes in archaeal viruses
Research output: Contribution to journal › Journal article › Research › peer-review
Bacterial chromosomes and their replication
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
Going through changes - the role of autophagy during reprogramming and differentiation
Research output: Contribution to journal › Review › Research › peer-review