Functional Genomics

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  1. 2019
  2. Published

    (p)ppGpp-mediated stress response induced by defects in outer membrane biogenesis and ATP production promotes survival in Escherichia coli

    Roghanian, Mohammad, Semsey, S., Løbner-Olesen, Anders & Jalalvand, F., 2019, In: Scientific Reports. 9, p. 1-11 2934.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Antibacterial mechanisms of GN-2 derived peptides and peptoids against Escherichia coli

    Saporito, P., Biljana, M., Løbner-Olesen, Anders & Jenssen, H., 2019, In: Biopolymers. 110, 6, 9 p., e23275.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Comprehensive search for accessory proteins encoded with archaeal and bacterial type III CRISPR-cas gene cassettes reveals 39 new cas gene families

    Shah, S. A., Alkhnbashi, O. S., Behler, J., Han, W., She, Q., Hess, W. R., Garrett, Roger Antony & Backofen, R., 2019, In: RNA Biology. 16, 4, p. 530-542 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Fatty acid starvation activates RelA by depleting lysine precursor pyruvate

    Sinha, A. K., Winther, K. S., Roghanian, Mohammad & Gerdes, K., 2019, In: Molecular Microbiology. 112, 4, p. 1339-1349

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    The RES domain toxins of RES-Xre toxin-antitoxin modules induce cell stasis by degrading NAD+

    Skjerning, R. B., Senissar, M., Winther, K. S., Gerdes, K. & Brodersen, D. E., 2019, In: Molecular Microbiology. 111, 1, p. 221-236

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Functions of Orc1-2 in the DNA damageresponsive regulation in Sulfolobus islandicus

    Sun, M., 2019, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  8. Published

    Birth and Resuscitation of (p)ppGpp Induced Antibiotic Tolerant Persister Cells

    Svenningsen, Mikkel Skjoldan, Veress, A., Harms, A., Mitarai, Namiko & Semsey, S., 15 Apr 2019, In: Scientific Reports. 9, 13 p., 6056.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Gene Expression Changes with Minor Effects on the Population Average Have Major Effects on the Occurrence of Cells with Extreme Protein Concentrations

    Svenningsen, Mikkel Skjoldan, Semsey, S. & Mitarai, Namiko, 2019, In: mSphere. 4, 1, p. 1-6 e00575-18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    CRP Interacts Specifically With Sxy to Activate Transcription in Escherichia coli

    Søndberg, E., Sinha, A. K., Gerdes, K. & Semsey, S., 2019, In: Frontiers in Microbiology. 10, 8 p., 2053.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Escherichia coli belonging to ST131 rarely transfers blactx-m-15 to fecal Escherichia coli

    Thingholm, K. R., Hertz, F. B., Løbner-Olesen, Anders, Frimodt-Møller, N. & Nielsen, K. L., 2019, In: Infection and Drug Resistance. 12, p. 2429-2435

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Comprehensive profiling of the fission yeast transcription start site activity during stress and media response

    Thodberg, Malte, Thieffry, A., Lange, Jette Bornholdt, Boyd, M., Holmberg, Christian, Azad, A., Workman, C. T., Chen, Y., Ekwall, K., Nielsen, Olaf & Sandelin, Albin Gustav, 28 Feb 2019, In: Nucleic Acids Research. 47, 4, p. 1671-1691 21 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Mating-type switching by homology-directed recombinational repair: a matter of choice

    Thon, Genevieve, Maki, T., Haber, J. E. & Iwasaki, H., 2019, In: Current Genetics. 65, 2, p. 351-362

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Intramolecular Interactions Dominate the Autoregulation of Escherichia coli Stringent Factor RelA

    Turnbull, K. J., Dzhygyr, I., Lindemose, Søren, Hauryliuk, V. & Roghanian, Mohammad, 2019, In: Frontiers in Microbiology. 10, 12 p., 1966.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    The Draft Genome of the Small, Spineless Green Alga Desmodesmus costato-granulatus (Sphaeropleales, Chlorophyta)

    Wang, S., Li, L., Xu, Y., Melkonian, B., Lorenz, M., Friedl, T., Petersen, Morten, Sahu, S. K., Melkonian, M. & Liu, Huan, 2019, In: Protist. 170, 6, 5 p., 125697.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Molecular evidence for origin, diversification and ancient gene duplication of plant subtilases (SBTs)

    Xu, Y., Wang, S., Li, L., Sahu, S. K., Petersen, Morten, Liu, X., Melkonian, M., Zhang, G. & Liu, Huan, 2019, In: Scientific Reports. 9, 10 p., 12485.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    The Draft Genome of Hariotina reticulata (Sphaeropleales, Chlorophyta) Provides Insight into the Evolution of Scenedesmaceae

    Xu, Y., Li, L., Liang, H., Melkonian, B., Lorenz, M., Friedl, T., Petersen, Morten, Liu, Huan, Melkonian, M. & Wang, S., 2019, In: Protist. 170, 6, 6 p., 125684.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    (p)ppGpp Regulates a Bacterial Nucleosidase by an Allosteric Two-Domain Switch

    ZHANG, YONG, Bærentsen, R. L., Fuhrer, T., Sauer, U., Gerdes, K. & Brodersen, D. E., 2019, In: Molecular Cell. 74, 6, p. 1239-1249, e1-e4

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. 2018
  20. Published

    A Unified Resource for Tracking Anti-CRISPR Names

    Bondy-Denomy, J., Davidson, A. R., Doudna, J. A., Fineran, P. C., Maxwell, K. L., Moineau, S., Peng, Xu, Sontheimer, E. J. & Wiedenheft, B., 2018, In: CRISPR Journal. 1, 5, p. 304-305

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  21. Published

    Expanding the potential of NAI-107 for treating serious ESKAPE pathogens: synergistic combinations against Gram-negatives and bactericidal activity against non-dividing cells

    Brunati, C., Thomsen, T. T., Gaspari, E., Maffioli, S., Sosio, M., Jabes, D., Løbner-Olesen, Anders & Donadio, S., 2018, In: The Journal of antimicrobial chemotherapy. 73, 2, p. 414-424 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Countermeasures to survive excessive chromosome replication in Escherichia coli

    Charbon, Godefroid, Riber, Leise & Løbner-Olesen, Anders, 2018, In: Current Genetics. 64, 1, p. 71-79 9 p.

    Research output: Contribution to journal › Review › Research › peer-review

  23. Published

    Iron chelation increases the tolerance of Escherichia coli to hyper-replication stress

    Charbon, Godefroid, Klitgaard, R. N., Liboriussen, C. D., Thulstrup, Peter Waaben, Maffioli, S. I., Donadio, S. & Løbner-Olesen, Anders, 2018, In: Scientific Reports. 8, 1, 14 p., 10550.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Regulation of Hed1 and Rad54 binding during maturation of the meiosis-specific presynaptic complex

    Crickard, J. B., Kaniecki, K., Kwon, Y., Sung, P., Lisby, Michael & Greene, E. C., 2018, In: EMBO Journal. 37, 7, 17 p., e98728.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Individual components of paired typical NLR immune receptors are regulated by distinct E3 ligases

    Dong, O. X., Ao, K., Xu, F., Johnson, K. C. M., Wu, Y., Li, L., Xia, S., Liu, Y., Huang, Y., Rodriguez, Eleazar, Chen, X., Chen, S., Zhang, Y., Petersen, Morten & Li, X., 2018, In: Nature Plants. 4, 9, p. 699-710

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Dissection of the antimicrobial and hemolytic activity of Cap18: generation of Cap18 derivatives with enhanced specificity

    Ebbensgaard, Anna Elisabeth, Mordhorst, H., Overgaard, M. T., Aarestrup, F. M. & Hansen, E. B., May 2018, In: PLOS ONE. 13, 5, p. 1-25 e0197742.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    The Role of Outer Membrane Proteins and Lipopolysaccharides for the Sensitivity of Escherichia coli to Antimicrobial Peptides

    Ebbensgaard, Anna Elisabeth, Mordhorst, H., Aarestrup, F. M. & Hansen, E. B., 2018, In: Frontiers in Microbiology. 9, p. 1-13 2153.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    A transcriptional factor B paralog functions as an activator to DNA damage-responsive expression in archaea

    Feng, X., Sun, M., Han, W., Liang, Y. X. & She, Q., 2018, In: Nucleic Acids Research. 46, 14, p. 7085-7096

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Identification of the archaeal regulatory network in DNA damage response

    Feng, X., 2018, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  30. Published

    A Type III-B Cmr effector complex catalyzes the synthesis of cyclic oligoadenylate second messengers by cooperative substrate binding

    Han, W., Stella, S., Zhang, Y., Guo, T., Sulek, K., Peng-Lundgren, L., Montoya, Guillermo & She, Q., 2018, In: Nucleic Acids Research. 46, 19, p. 10319-10330 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Toxins, Targets, and Triggers: An Overview of Toxin-Antitoxin Biology

    Harms, A., Brodersen, D. E., Mitarai, Namiko & Gerdes, K., 7 Jun 2018, In: Molecular Cell. 70, 5, p. 768-784 17 p.

    Research output: Contribution to journal › Review › Research › peer-review

  32. Published

    Chromosome replication as a measure of bacterial growth rate during Escherichia coli infection in the mouse peritonitis model

    Haugan, M. S., Charbon, Godefroid, Frimodt-Møller, N. & Løbner-Olesen, Anders, 1 Dec 2018, In: Scientific Reports. 8, p. 1-13 14961.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Anti-CRISPR proteins encoded by archaeal lytic viruses inhibit subtype I-D immunity

    He, F., Bhoobalan, Yuvaraj, Van, L. B., Kjeldsen, A. L., Dedola, M., Makarova, K. S., Koonin, E. V., Brodersen, D. E. & Peng, Xu, 2018, In: Nature Microbiology. 3, 4, p. 461-469 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    SLING: a tool to search for linked genes in bacterial datasets

    Horesh, G., Harms, A., Fino, C., Parts, L., Gerdes, K., Heinz, E. & Thomson, N. R., 2018, In: Nucleic Acids Research. 46, 21, p. 1-10 e128.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Long-term industrial metal contamination unexpectedly shaped diversity and activity response of sediment microbiome

    Jacquiod, S. J. A., Cyriaque, V., Riber, Leise, Al-Soud, W. A., Gillan, D. C., Wattiez, R. & Sørensen, Søren Johannes, 15 Feb 2018, In: Journal of Hazardous Materials. 344, p. 299-307 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Dependency of Heterochromatin Domains on Replication Factors

    Jahn, L. J., Mason, B., Brøgger, Peter, Toteva, T., Nielsen, D. K. & Thon, Genevieve, 2018, In: G3: Genes, Genomes, Genetics (Bethesda). 8, 2, p. 477-489 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Update on non-typeable Haemophilus influenzae-mediated disease and vaccine development

    Jalalvand, F. & Riesbeck, K., 3 Jun 2018, In: Expert Review of Vaccines. 17, 6, p. 503-512

    Research output: Contribution to journal › Review › Research › peer-review

  38. Published

    Structure of the replication regulator Sap1 reveals functionally important interfaces

    Jørgensen, M. L. M., Ekundayo, B., Zaratiegui, M., Skriver, Karen, Thon, Genevieve & Schalch, T., 2018, In: Scientific Reports. 8, 9 p., 10930.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    DNA Damage Repair and Drug Efflux as Potential Targets for Reversing Low or Intermediate Ciprofloxacin Resistance in E. coli K-12

    Klitgaard, R. N., Jana, B., Guardabassi, Luca, Nielsen, K. L. & Løbner-Olesen, Anders, 2 Jul 2018, In: Frontiers in Microbiology. 9, 6 p., 1438.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Insights into the evolutionary conserved regulation of Rio ATPase activity

    Knüppel, R., Christensen, R. H., Gray, F. C., Esser, D., Strauss, D., Medenbach, J., Siebers, B., MacNeill, S. A., LaRonde, N. & Ferreira-Cerca, S., 2018, In: Nucleic Acids Research. 46, 3, p. 1441-1456

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Fumarase is involved in DNA double-strand break resection through a functional interaction with Sae2

    Leshets, M., Ramamurthy, D., Lisby, Michael, Lehming, N. & Pines, O., 2018, In: Current Genetics. 64, 3, p. 697-712 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Type III CRISPR-Cas System: Introduction And Its Application for Genetic Manipulations

    Liu, T., Pan, S., Li, Y., Peng, N. & She, Q., 1 Jan 2018, In: Current Issues in Molecular Biology. 26, p. 1-14 14 p.

    Research output: Contribution to journal › Review › Research › peer-review

  43. Published

    An intriguing relationship between the cyclic diguanylate signaling system and horizontal gene transfer

    Madsen, Jonas Stenløkke, Hylling, Ole, Jacquiod, S. J. A., Pécastaings, S., Hansen, L. H., Riber, Leise, Vestergaard, G. A. & Sørensen, Søren Johannes, 2018, In: ISME Journal. 12, 9, p. 2330-2334 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    New insights into donor directionality of mating-type switching in Schizosaccharomyces pombe

    Maki, T., Ogura, N., Haber, J. E., Iwasaki, H. & Thon, Genevieve, May 2018, In: PLOS Genetics. 14, 5, p. 1-25 e1007424.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    A Critical Role for Dna2 at Unwound Telomeres

    Markiewicz-Potoczny, M., Lisby, Michael & Lydall, D., 2018, In: Genetics. 209, 1, p. 129-141 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Erratum: Formation of a viral replication focus in Sulfolobus cells infected by the rudivirus Sulfolobus islandicus rod-shaped virus 2 [Journal of Virology, 91, 13, (2017), (e00486-17)] DOI:10.1128/JVI.00486-17

    Martinez Alvarez, Laura, Deng, Ling & Peng, Xu, 1 Apr 2018, In: Journal of Virology. 92, 7, e01991-17.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  47. Published

    Anti-CRISPR-Based and CRISPR-Based Genome Editing of Sulfolobus islandicus Rod-Shaped Virus 2

    Mayo-Muñoz, D., He, F., Jørgensen, J. B., Madsen, P. K., Bhoobalan, Yuvaraj & Peng, Xu, 2018, In: Viruses. 10, 12, p. 1-17 695.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Coping with Reactive Oxygen Species to Ensure Genome Stability in Escherichia coli

    Mendoza-Chamizo, B., Løbner-Olesen, Anders & Charbon, Godefroid, 2018, In: Genes. 9, 11, 565.

    Research output: Contribution to journal › Review › Research › peer-review

  49. Published

    Replication Fork Breakage and Restart in Escherichia coli

    Michel, B., Sinha, A. K. & Leach, D. R. F., 2018, In: Microbiology and Molecular Biology Reviews. 82, 3, 19 p., e00013-18.

    Research output: Contribution to journal › Review › Research › peer-review

  50. Published

    Comparative Effectiveness of Low-Volume Time-Efficient Resistance Training Versus Endurance Training in Patients With Heart Failure

    Munch, G. W., Rosenmeier, J. B., Petersen, Morten, Rinnov, A. R., Iepsen, U. W., Pedersen, Bente Klarlund & Mortensen, S. P., 2018, In: Journal of Cardiopulmonary Rehabilitation and Prevention. 38, 3, p. 175-181 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    FANCD2 binding identifies conserved fragile sites at large transcribed genes in avian cells

    Pentzold, C., Shah, S. A., Hansen, Niels Richard, Le Tallec, B., Seguin-Orlando, A., Debatisse, M., Lisby, Michael & Østergaard, Vibe Hallundbæk, 2018, In: Nucleic Acids Research. 46, 3, p. 1280-1294 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Monitoring plasmid-mediated horizontal gene transfer in microbiomes: recent advances and future perspectives

    Pinilla Redondo, Rafael, Cyriaque, V., Jacquiod, S., Sørensen, Søren Johannes & Riber, Leise, 2018, In: Plasmid. 99, p. 56-67

    Research output: Contribution to journal › Review › Research › peer-review

  53. Published

    Fluorescence recovery allows theimplementation of a fluorescence reporter gene platform applicable for the detection and quantification of horizontal gene transfer in anoxic environments

    Pinilla Redondo, Rafael, Riber, Leise & Sørensen, Søren Johannes, 2018, In: Applied and Environmental Microbiology. 84, 6, 9 p., e02507-17.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Ribosome Hibernation

    Prossliner, T., Winther, K. S., Sørensen, Michael Askvad & Gerdes, K., 2018, In: Annual Review of Genetics. 52, p. 321-348

    Research output: Contribution to journal › Review › Research › peer-review

  55. Published

    Imaging of DNA Ultrafine Bridges in Budding Yeast

    Quevedo Rodriguez, O. & Lisby, Michael, 2018, Genome Instability: Methods and Protocols. Muzi-Falconi, M. & Brown, G. W. (eds.). Humana Press, p. 483-493 11 p. (Methods in Molecular Biology, Vol. 1672).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  56. Published

    Diversity and Contributions to Nitrogen Cycling and Carbon Fixation of Soil Salinity Shaped Microbial Communities in Tarim Basin

    Ren, M., Zhang, Z., Wang, X., Zhou, Z., Chen, D., Zeng, H., Zhao, S., Chen, L., Hu, Y., Zhang, C., Liang, Y., She, Q., Zhang, Y. & Peng, N., 2018, In: Frontiers in Microbiology. 9, 14 p., 431.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    HipA-Mediated Phosphorylation of SeqA Does not Affect Replication Initiation in Escherichia coli

    Riber, Leise, Koch, B. M., Kruse, L. R., Germain, E. & Løbner-Olesen, Anders, 2 Nov 2018, In: Frontiers in Microbiology. 9, p. 1-9 2637.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    Functional and Expression Analyses of the Pneumocystis MAT Genes Suggest Obligate Sexuality through Primary Homothallism within Host Lungs

    Richard, S., Almeida, J. M. G. C. F., Cissé, O. H., Luraschi, A., Nielsen, Olaf, Pagni, M. & Hauser, P. M., 2018, In: mBio. 9, 1, 10 p., e02201-17.

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    DNA damage as a consequence of NLR activation

    Rodriguez, Eleazar, Chevalier, J., El Ghoul, H., Voldum-Clausen, K., Mundy, J. & Petersen, Morten, 2018, In: PLOS Genetics. 14, 2, 17 p., e1007235.

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    A Robust Proton Flux (pHlux) Assay for Studying the Function and Inhibition of the Influenza A M2 Proton Channel

    Santner, P., Martins, J. M. D. S., Laursen, J. S., Behrendt, L., Riber, Leise, Olsen, Christian Adam, Arkin, I. T., Winther, Jakob R., Willemoës, Martin & Lindorff-Larsen, Kresten, 2018, In: Biochemistry. 57, 41, p. 5949-5956

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    LL-37 fragments have antimicrobial activity against Staphylococcus epidermidis biofilms and wound healing potential in HaCaT cell line

    Saporito, P., Vang Mouritzen, M., Løbner-Olesen, Anders & Jenssen, H., 2018, In: Journal of Peptide Science. 24, 7, 12 p., e3080.

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    Synthesis and Activity of Antimicrobial Peptides

    Saporito, P., 2018, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  63. Published

    The kinases HipA and HipA7 phosphorylate different substrate pools in Escherichia coli to promote multidrug tolerance

    Semanjski, M., Germain, E., Bratl, K., Kiessling, A., Gerdes, K. & Macek, B., 2018, In: Science Signaling. 11, 547, p. 1-13 eaat5750.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    The Interplay Between Immune Response and Bacterial Infection in COPD: Focus Upon Non-typeable Haemophilus influenzae

    Su, Y., Jalalvand, F., Thegerström, J. & Riesbeck, K., 2018, In: Frontiers in Immunology. 9, p. 1-26 2530.

    Research output: Contribution to journal › Review › Research › peer-review

  65. Published

    An Orc1/Cdc6 ortholog functions as a key regulator in the DNA damage response in Archaea

    Sun, M., Feng, X., Liu, Z., Han, W., Liang, Y. X. & She, Q., 2018, In: Nucleic Acids Research. 46, 13, p. 6697-6711

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    Transcriptome-Wide Analysis of Protein-RNA and RNA-RNA Interactions in Pathogenic Bacteria

    Tree, J. J., Gerdes, K. & Tollervey, D., 2018, High-Density Sequencing Applications in Microbial Molecular Genetics. Carpousis, A. J. (ed.). Academic Press, Vol. 612. p. 467-488 (Methods in Enzymology).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  67. Published

    Common Chromosomal Fragile Sites - Conserved Failure Stories

    Voutsinos, Vasileios, Munk, S. H. N. & Østergaard, Vibe Hallundbæk, 2018, In: Genes. 9, 12, p. 1-16 580.

    Research output: Contribution to journal › Review › Research › peer-review

  68. Published

    Activation of the Stringent Response by Loading of RelA-tRNA Complexes at the Ribosomal A-Site

    Winther, K. S., Roghanian, Mohammad & Gerdes, K., 2018, In: Molecular Cell. 70, 1, p. 95-105, e1-e4 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. Published

    Discovering novel hydrolases from hot environments

    Wohlgemuth, R., Littlechild, J., Monti, D., Schnorr, K., van Rossum, T., Siebers, B., Menzel, P., Kublanov, I. V., Rike, A. G., Skretas, G., Szabo, Z., Peng, Xu & Young, M. J., 2018, In: Biotechnology Advances. 36, 8, p. 2077-2100

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    Novel (p)ppGpp Binding and Metabolizing Proteins of Escherichia coli

    ZHANG, YONG, Zbornikova, E., Rejman, D. & Gerdes, K., 2018, In: mBio. 9, 2, 20 p., e02188-17.

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    Functional study of PAT mRNA decapping factors in Arabidopsis

    Zuo, Zhangli Thomsen, 2018, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  72. Published

    ALG-2 participates in recovery of cells after plasma membrane damage by electroporation and digitonin treatment

    la Cour, J. M., Gojkovic, P. W., Ambjorner, S. E. B., Bagge, J., Jensen, S. M., Panina, S. & Berchtold, Martin Werner, 2018, In: PLOS ONE. 13, 9, p. 1-13 e0204520.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. 2017
  74. Published

    The role of the Saccharomyces cerevisiae Rdh54 DNA translocase at kinetochores

    Bacinskaja, G., 2017, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  75. Published

    Remotely controlled fusion of selected vesicles and living cells

    Bahadori, Azra, Rørvig-Lund, A., Semsey, S., Oddershede, L. B. & Bendix, Poul Martin, 15 Dec 2017, In: Proceedings of SPIE. 9922, p. 992211-1

    Research output: Contribution to journal › Conference article › Research › peer-review

  76. Published

    Toxin inhibition in C. crescentus VapBC1 is mediated by a flexible pseudo-palindromic protein motif and modulated by DNA binding

    Bendtsen, K. L., Xu, K., Luckmann, M., Winther, K. S., Shah, S. A., Pedersen, C. N. S. & Brodersen, D. E., 2017, In: Nucleic Acids Research. 45, 5, p. 2875-2886 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Chitin-induced responses in the moss Physcomitrella patens

    Bressendorff, Simon, Rasmussen, M. W., Petersen, Morten & Mundy, J., 2017, Plant pattern recognition receptors: methods and protocols. Shan, L. & He, P. (eds.). Springer, p. 317-324 8 p. (Methods in Molecular Biology, Vol. 1578).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  78. Published

    Discrete structural dynamics of pseudo-palindromic motifs control DNA binding of bacterial toxin-antitoxin complexes

    Brodersen, D. E., Bendtsen, K. L., Xu, K., Luckmann, M., Winther, K. S., Shah, S. A. & Pedersen, C. N. S., 2017, In: F A S E B Journal. 31, S1, 1 p., 777.2.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  79. Published

    Regulation of telomere metabolism by the RNA processing protein Xrn1

    Cesena, D., Cassani, C., Rizzo, E., Lisby, Michael, Bonetti, D. & Longhese, M. P., 20 Apr 2017, In: Nucleic Acids Research. 45, 7, p. 3860-3874 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    Re-wiring of energy metabolism promotes viability during hyperreplication stress in E. coli

    Charbon, Godefroid, Campion, C., Chan, S. H. J., Bjørn, L., Weimann, A., da Silva, L. C. N., Jensen, P. R. & Løbner-Olesen, Anders, 27 Jan 2017, In: PLoS Genetics. 13, 1, 26 p., e1006590.

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Ethyl methanesulfonate mutagenesis in Schizosaccharomyces pombe

    Ekwall, K. & Thon, Genevieve, Aug 2017, In: Cold Spring Harbor Protocols. 2017, 8, p. 643-646 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Genetic analysis of Schizosaccharomyces pombe

    Ekwall, K. & Thon, Genevieve, Aug 2017, In: Cold Spring Harbor Protocols. 2017, 8, p. 593-605 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    Mating-type determination in Schizosaccharomyces pombe

    Ekwall, K. & Thon, Genevieve, Aug 2017, In: Cold Spring Harbor Protocols. 2017, 8, p. 641-642 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    Selecting Schizosaccharomyces pombe diploids

    Ekwall, K. & Thon, Genevieve, Jul 2017, In: Cold Spring Harbor Protocols. 2017, 7, p. 537-540 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    Setting up Schizosaccharomyces pombe crosses/matings

    Ekwall, K. & Thon, Genevieve, Jul 2017, In: Cold Spring Harbor Protocols. 2017, 7, p. 533-536 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    Spore analysis and tetrad dissection of Schizosaccharomyces pombe

    Ekwall, K. & Thon, Genevieve, Jul 2017, In: Cold Spring Harbor Protocols. 2017, 7, p. 541-544 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    Sugar metabolism of the first thermophilic Planctomycete Thermogutta terrifontis: comparative genomic and transcriptomic approaches

    Elcheninov, A. G., Menzel, P., Gudbergsdottir, S. R., Slesarev, A. I., Kadnikov, V. V., Krogh, Anders, Bonch-Osmolovskaya, E. A., Peng, Xu & Kublanov, I. V., 2 Nov 2017, In: Frontiers in Microbiology. 8, 11 p., 2140.

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    Regulation of Burkholderia cenocepacia biofilm formation by RpoN and the c-di-GMP effector BerB

    Fazli, M., Rybtke, Morten Levin, Steiner, E., Weidel, E., Berthelsen, J., Groizeleau, J. D. D., Bin, W., Zhi, B. Z., Yaming, Z., Kaever, V., Givskov, Michael, Hartmann, R. W., Eberl, L. & Tolker-Nielsen, Tim, 2017, In: MicrobiologyOpen. 6, 4, 13 p., e00480.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    Novel thermostable amine transferases from hot spring metagenomes

    Ferrandi, E. E., Previdi, A., Bassanini, I., Riva, S., Peng, Xu & Monti, D., Jun 2017, In: Applied Microbiology and Biotechnology. 101, 12, p. 4963-4979 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    Deoxynucleoside salvage in fission yeast allows rescue of ribonucleotide reductase deficiency but not Spd1-mediated inhibition of replication

    Fleck, O., Fahnøe, Ulrik, Løvschal, K. V., Gasasira, M. U., Marinova, I. N., Kragelund, Birthe Brandt, Carr, A. M., Hartsuiker, E., Holmberg, Christian & Nielsen, Olaf, 25 Apr 2017, In: Genes. 8, 5, 14 p., 128.

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    Control of bacterial chromosome replication by non-coding regions outside the origin

    Frimodt-Møller, Jakob, Charbon, Godefroid & Løbner-Olesen, Anders, 2017, In: Current Genetics. 63, 4, p. 607-611 5 p.

    Research output: Contribution to journal › Review › Research › peer-review

  92. Published

    Determination of the optimal chromosomal location(s) for a DNA element in Escherichia coli using a novel transposon-mediated approach

    Frimodt-Møller, Jakob, Charbon, Godefroid, Krogfelt, K. A. & Løbner-Olesen, Anders, 11 Sep 2017, In: Journal of Visualized Experiments. 127, e55946.

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    Ribosome-dependent Vibrio cholerae mRNAse HigB2 is regulated by a β-strand sliding mechanism

    Hadži, S., Garcia-Pino, A., Haesaerts, S., Jurėnas, D., Gerdes, K., Lah, J. & Loris, R., 5 May 2017, In: Nucleic Acids Research. 45, 8, p. 4972-4983 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    A type III-B CRISPR-Cas effector complex mediating massive target DNA destruction

    Han, W., Li, Y., Deng, Ling, Feng, M., Peng, W., Hallstrøm, S., Zhang, J., Peng, N., Liang, Y. X., White, M. F. & She, Q., 2017, In: Nucleic Acids Research. 45, 4, p. 1983–1993 11 p., gkw1274.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    Allosteric regulation of Csx1, a type IIIB-associated CARF domain ribonuclease by RNAs carrying a tetraadenylate tail

    Han, W., Pan, S., López-Méndez, B., Montoya, Guillermo & She, Q., 13 Oct 2017, In: Nucleic Acids Research. 45, 18, p. 10740-10750 11 p., gkx726.

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    CRISPR History: Discovery, Characterization, and Prosperity

    Han, W. & She, Q., 2017, CRISPR in Animals and Animal Models. Torres-Ruiz, R. & Rodriguez-Perales, S. (eds.). Elsevier, p. 1-21 20 p. (Progress in Molecular Biology and Translational Science, Vol. 152).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  97. Published

    NQO-induced DNA-less cell formation is associated with chromatin protein degradation and dependent on A0A1-ATPase in Sulfolobus

    Han, W., Xu, Y., Feng, X., Liang, Y. X., Huang, L., Shen, Y. & She, Q., 14 Aug 2017, In: Frontiers in Microbiology. 8, 12 p., 1480.

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    Reverse gyrase functions in genome integrity maintenance by protecting DNA breaks in vivo

    Han, W., Feng, X. & She, Q., Jul 2017, In: International Journal of Molecular Sciences. 18, 7, 13 p., 1340.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Prophages and growth dynamics confound experimental results with antibiotic-tolerant persister cells

    Harms, A., Fino, C., Sørensen, Michael Askvad, Semsey, S. & Gerdes, K., 12 Dec 2017, In: mBio. 8, 6, 18 p., e01964-17.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    CRISPR-Cas type I-A Cascade complex couples viral infection surveillance to host transcriptional regulation in the dependence of Csa3b

    He, F., Vestergaard, G. A., Peng, W., She, Q. & Peng, Xu, 2017, In: Nucleic Acids Research. 45, 4, p. 1902-1913 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  101. Published

    Chitin and stress induced protein kinase activation

    Kenchappa, C. S., Azevedo da Silva, R., Bressendorff, Simon, Stanimirovic, S., Olsen, J. V., Petersen, Morten & Mundy, J., 2017, Plant pattern recognition receptors: methods and protocols. Shan, L. & He, P. (eds.). Springer, p. 185-194 10 p. (Methods in Molecular Biology, Vol. 1578).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  102. Published

    The Smc5/6 complex regulates the yeast Mph1 helicase at RNA-DNA hybrid-mediated DNA damage

    Lafuente-Barquero, J., Luke-Glaser, S., Graf, M., Pinela da Silva, S. C., Gómez-González, B., Lockhart, A., Lisby, Michael, Aguilera, A. & Luke, B., 27 Dec 2017, In: PLOS Genetics. 13, 12, 25 p., e1007136.

    Research output: Contribution to journal › Journal article › Research › peer-review

  103. Published

    Cmr1 enables efficient RNA and DNA interference of a III-B CRISPR–Cas system by binding to target RNA and crRNA

    Li, Y., Zhang, Y., Lin, Jinzhong, Pan, S., Han, W., Peng, N., Liang, Y. X. & She, Q., 2 Nov 2017, In: Nucleic Acids Research. 45, 19, p. 11305-11314 10 p., gkx791.

    Research output: Contribution to journal › Journal article › Research › peer-review

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