Functional Genomics

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  1. 2013
  2. Published

    Subnuclear relocalization and silencing of a chromosomal region by an ectopic ribosomal DNA repeat

    Jakociunas, T., Domange Jordö, M. E., Mebarek, M. A., Bünner, C. M., Hansen, J. V., Oddershede, L. B. & Thon, Genevieve, 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 47, p. E4465-E4473 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Two portable recombination enhancers direct donor choice in fission yeast heterochromatin

    Jakociunas, T., Holm, L. R., Hansen, J. V., Trusina, Ala & Thon, Genevieve, 2013, In: P L o S Genetics. 9, 10, 14 p., e1003762.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Genomics and genetics of Sulfolobus islandicus LAL14/1, a model hyperthermophilic archaeon

    Jaubert, C., Danioux, C., Oberto, J., Cortez, D., Bize, A., Krupovic, M., She, Q., Forterre, P., Prangishvili, D. & Sezonov, G., 2013, In: Open Biology. 3, 4, 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana

    Jensen, M. K., Lindemose, Søren, Masi, F. D., Reimer, J. J., Nielsen, M., Perera, V., Workman, C. T., Turck, F., Grant, M. R., Mundy, J., Petersen, Morten & Skriver, Karen, 2013, In: FEBS Open Bio. 3, p. 321-327 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Solution properties of the archaeal CRISPR DNA repeat-binding homeodomain protein Cbp2

    Kenchappa, C., Heiðarsson, P. O., Kragelund, Birthe Brandt, Garrett, Roger Antony & Poulsen, F., 2013, In: Nucleic Acids Research. 41, 5, p. 3424-3435 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Cyclic peptide inhibitors of the β-sliding clamp in Staphylococcus aureus

    Kjelstrup, S., Hansen, P. M. P., Thomsen, Line Elnif, Hansen, Paul Robert & Løbner-Olesen, Anders, 2013, In: P L o S One. 8, 9, 13 p., e72273.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Protein dielectric constants determined from NMR chemical shift perturbations

    Kukic, P., Farrell, D., McIntosh, L. P., García-Moreno E., B., Jensen, K. S., Toleikis, Z., Teilum, Kaare & Nielsen, J. E., 2013, In: Journal of the American Chemical Society. 135, 45, p. 16968–16976 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Concerted action of the Ubiquitin-Fusion Degradation Protein 1 (Ufd1) and Sumo-Targeted Ubiquitin Ligases (STUbLs) in the DNA-damage response

    Køhler, J. B., Jørgensen, M. L. M., Beinoraite, G., Thorsen, M. & Thon, Genevieve, 2013, In: P L o S One. 8, 11, 15 p., e80442.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    A novel carboxyl-terminal protease derived from Paenibacillus lautus CHN26 exhibiting high activities at multiple sites of substrates

    Li, Y., Pan, Y., She, Q. & Chen, L., 2013, In: B M C Biotechnology. 13, 13 p., 89.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Knockouts of RecA-Like proteins RadC1 and RadC2 have distinct responses to DNA damage agents in Sulfolobus islandicus

    Liang, P., Han, W., Huang, Q., Li, Y., Ni, J., She, Q. & Shen, Y., 2013, In: Journal of Genetics and Genomics. 40, 10, p. 533-542 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Structure, function and networks of transcription factors involved in abiotic stress responses

    Lindemose, Søren, O'Shea, Charlotte, Jensen, M. K. & Skriver, Karen, 2013, In: International Journal of Molecular Sciences (Online). 14, 3, p. 5842-78 37 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Physical mapping and cloning of RAD56

    Mathiasen, D. P., Gallina, I., Germann, S. M., Hamou, W., Eléouët, M., Thodberg, S., Eckert-Boulet, N., Game, J. & Lisby, Michael, 25 Apr 2013, In: Gene. 519, 1, p. 182-186 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Discovery and seminal developments in the CRISPR field

    Mojica, F. J. M. & Garrett, Roger Antony, 2013, CRISPR-Cas Systems: RNA-mediated Adaptive Immunity in Bacteria and Archaea. Barrangou, R. & van der Oost, J. (eds.). Springer VS, p. 1-31 31 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  15. Published

    RNAi screening for characterisation of ER-associated degradation pathways in mammalian cells

    Månsson, M. D. J., 2013, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  16. Published

    The role of C/EBPa in PD-1+ CD4+ T cells & modulation of RNR activity prolongs survival of mice with AML

    Norrie, I. C., 2013, Department of Biology, Faculty of Science, University of Copenhagen. 118 p.

    Research output: Book/Report › Ph.D. thesis › Research

  17. Published

    Novel insights into gene regulation of the rudivirus SIRV2 infecting Sulfolobus cells

    Okutan, E., Deng, Ling, Mirlashari, S., Uldahl, K., Halim, M., Liu, C., Garrett, Roger Antony, She, Q. & Peng, Xu, 2013, In: R N A Biology. 10, 5, p. 1-11 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

    Orlando, L. A. A., Ginolhac, A., Zhang, G., Froese, D., Albrechtsen, A., Stiller, M., Schubert, M., Cappellini, E., Petersen, B., Moltke, I., Johnson, P. L. F., Fumagalli, M., Mouatt, J. T. V., Raghavan, M., Korneliussen, T. S., Malaspinas, A. S., Vogt, J., Szklarczyk, D. M., Kelstrup, C., Vinther, J. & 36 others, Dolocan, A., Stenderup, Jesper Tandberg, Velazquez, A. M. V., Cahill, J., Rasmussen, M., Wang, X., Min, J., Zazula, G. D., Seguin-Orlando, A., Mortensen, C., Magnussen, K., Thompson, J. F., Weinstock, J., Gregersen, K., Røed, K. H., Eisenmann, V., Rubin, C. J., Miller, D. C., Antczak, D. F., Bertelsen, M. F., Brunak, S., Al-Rasheid, K. A. S., Ryder, O., Andersson, L., Mundy, J., Krogh, Anders, Gilbert, M Thomas P, Kjær, Kurt H., Sicheritz-Pontén, T., Jensen, Lars Juhl, Olsen, Jesper Velgaard, Hofreiter, M., Nielsen, R., Shapiro, B., Wang, J. & Willerslev, Eske, 4 Jul 2013, In: Nature. 499, 7456, p. 74-78 5 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  19. Published

    Genetic determinants of PAM-dependent DNA targeting and pre-crRNA processing in Sulfolobus islandicus

    Peng, W., Li, H., Hallstrøm, S., Peng, N., Liang, Y. X. & She, Q., 2013, In: R N A Biology. 10, 5, p. 1-11 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Volume of Hsp90 ligand binding and the unfolding phase diagram as a function of pressure and temperature

    Petrauskas, V., Gylyte, J., Toleikis, Z., Cimmperman, P. & Matulis, D., 2013, In: European Biophysics Journal. 42, 5, p. 355-362 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Transcriptome responses to combinations of stresses in Arabidopsis

    Rasmussen, S., Barah, P., Suarez Rodriguez, M. C., Bressendorff, Simon, Friis, P., Costantino, P., Bones, A. M., Nielsen, H. B. & Mundy, J., 2013, In: Plant Physiology. 161, 4, p. 1783-1794 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Transcriptomic analysis of the SSV2 infection of Sulfolobus solfataricus with and without the integrative plasmid pSSVi

    Ren, Y., She, Q. & Huang, L., 2013, In: Virology. 441, 2, p. 126-134 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Exposure to Cr(VI) induces organ dependent MSI in two loci related with photophosphorylation and with glutamine metabolism

    Rodriguez, E., Azevedo de Silva, R., Remédios, C., Almeida, T., Fernandes, P. & Santos, C., 2013, In: Journal of Plant Physiology. 170, 5, p. 534-538 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Specificity and function of Archaeal DNA replication initiator proteins

    Samson, R., Xu, Y., Gadelha, C., Stone, T., Faqiri, J., Li, D., Qin, N., Pu, F., Liang, Y., She, Q. & Bell, S., 2013, In: Cell Reports. 3, 2, p. 485-496 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Genome Sequence of a Novel Archaeal Fusellovirus Assembled from the Metagenome of a Mexican Hot Spring

    Servin-Garciduenas, L. E., Peng, Xu, Garrett, Roger Antony & Martinez-Romero, E., 2013, In: Genome Announcements. 1, p. 1-2 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Genome Sequence of a Novel Archaeal Rudivirus Recovered from a Mexican Hot Spring

    Servín-Garcidueñas, L., Peng, Xu, Garrett, Roger Antony & Martínez-Romero, E., 2013, In: Genome Announcements. 1, 1, p. 1-2 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Genome Sequence of the Acidophilic Bacterium Acidocella sp. Strain MX-AZ02

    Servín-Garcidueñas, L. E., Garrett, Roger Antony, Amils, R. & Martínez-Romero, E., 2013, In: Genome Announcements. 1, 1, p. 1-2 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Protospacer recognition motifs: Mixed identities and functional diversity

    Shah, S. A., Erdmann, S., Mojica, F. J. M. & Garrett, Roger Antony, 2013, In: R N A Biology. 10, 5, p. 1-9 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Archaeal type II toxin-antitoxins

    Shah, S. A. & Garrett, Roger Antony, 2013, Prokaryotic toxin-antitoxins. Gerdes, K. (ed.). Springer, p. 225-238 14 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  30. Published

    Characterising the CRISPR immune system in Archaea using genome sequence analysis

    Shah, S. A., 2013, Department of Biology, Faculty of Science, University of Copenhagen. 219 p.

    Research output: Book/Report › Ph.D. thesis › Research

  31. Published

    Molecular cloning of a novel bioH gene from an environmental metagenome encoding a carboxylesterase with exceptional tolerance to organic solvents

    Shi, Y., Pan, Y., Li, B., He, W., She, Q. & Chen, L., 2013, In: B M C Biotechnology. 13, 11 p., 13.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Rapid selection of Plasmodium falciparum chloroquine resistance transporter gene and multidrug resistance gene-1 haplotypes associated with past chloroquine and present artemether-lumefantrine use in Inhambane District, southern Mozambique

    Thomsen, T. T., Madsen, L. B., Hansson, Helle Smedegaard, Tomás, E. V. E., Charlwood, D., Bygbjerg, Ib Christian & Alifrangis, Michael, Mar 2013, In: American Journal of Tropical Medicine and Hygiene. 88, 3, p. 536-41 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Biology, biodiversity and application potential of thermophilic viruses

    Uldahl, K. B. & Peng, Xu, 2013, Thermophilic Microbes in Environmental and Industrial Biotechnology: Biotechnology of Thermophiles. Satyanarayana, T., Littlechild, J. & Kawarabayasi, Y. (eds.). Springer, p. 271-304 34 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  34. Published

    Genetic manipulation in Sulfolobus islandicus and functional analysis of DNA repair genes

    Zhang, C., Tian, B., Li, S., Ao, X., Dalgaard, K., Gökce, S., Liang, Y. & She, Q., 2013, In: Biochemical Society Transactions. 41, 1, p. 405-410 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Molecular cloning and antimicrobial activity of enterolysin A and helveticin J of bacteriolysins from metagenome of Chinese traditional fermented foods

    Zhang, T., Pan, Y., Li, B., Ou, J., Zhang, J., Chen, Y., Peng, Xu & Chen, L., 2013, In: Food Control. 31, 2, p. 499-507 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. 2012
  37. Published

    Cyclin-dependent kinase suppression by WEE1 kinase protects the genome through control of replication initiation and nucleotide consumption

    Beck, H., Nähse-Kumpf, V., Larsen, Marie Sofie Yoo, O'Hanlon, K. A., Patzke, S., Holmberg, Christian, Mejlvang, J., Groth, Anja, Nielsen, Olaf, Syljuåsen, R. G. & Sørensen, Claus Storgaard, 2012, In: Molecular and Cellular Biology. 32, 20, p. 4226-4236 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Lack of the RNA chaperone Hfq attenuates pathogenicity of several Escherichia coli pathotypes towards Caenorhabditis elegans

    Bojer, M. S., Jakobsen, H., Struve, C., Krogfelt, K. A. & Løbner-Olesen, Anders, 2012, In: Microbes and Infection. 14, 12, p. 1034-1039 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Immunity in the moss Physcomitrella patens

    Bressendorff, Simon, 2012, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  40. Published

    Modulation of CRISPR locus transcription by the repeat-binding protein Cbp1 in Sulfolobus

    Deng, Ling, Kenchappa, C. S., Peng, Xu, She, Q. & Garrett, Roger Antony, 2012, In: Nucleic Acids Research. 40, 6, p. 2470-2480 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    MRN1 implicates chromatin remodeling complexes and architectural factors in mRNA maturation.

    Düring, L., Thorsen, M., Petersen, D., Køster, B., Jensen, T. H. & Holmberg, Steen, 2012, In: P L o S One. 7, 9, 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Optimization of ordered plasmid assembly by gap repair in Saccharomyces cerevisiae

    Eckert-Boulet, N. V., Pedersen, M. L., Krogh, B. O. & Lisby, Michael, 2012, In: Yeast. 29, 8, p. 323-334 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    On the misgivings of anthropomorphic consensus polling in defining the complexity of life

    Egel, Richard, 2012, In: Journal of Biomolecular Structure & Dynamics. 29, 4, p. 615-616 2 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  44. Published

    Selective and hyperactive uptake of foreign DNA by adaptive immune systems of an archaeon via two distinct mechanisms: [plus] Corrigendum

    Erdmann, S. & Garrett, Roger Antony, 2012, In: Molecular Microbiology. 85, 6, p. 1044-1056 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Crystal structure of ATVORF273, a new fold for a thermo- and acido-stable protein from the Acidianus two-tailed virus

    Felisberto-Rodrigues, C., Blangy, S., Goulet, A., Vestergaard, G. A., Cambillau, C., Garrett, Roger Antony & Ortiz-Lombardía, M., 2012, In: P L o S One. 7, 10, 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Receptor-like kinase complexes in plant innate immunity

    Greeff, M. C., Roux, M. E., Mundy, J. & Petersen, Morten, 2012, In: Frontiers in Plant Science. 3, 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae

    Henriksen, P., Wagner, S. A., Weinert, B. T., Sharma, S., Bacinskaja, G., Rehman, M., Juffer, A. H., Walther, T. C., Lisby, Michael & Choudhary, Chunaram, 2012, In: Molecular & Cellular Proteomics. 11, 11, p. 1510-1522 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    New romance between RNA degradation pathways: Mmi1 and RNAi meet on heterochromatic islands

    Holm, L. R. & Thon, Genevieve, 2012, In: E M B O Journal. 31, p. 2242 - 2243 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Replication: DNA Building Block Synthesis On Demand

    Holmberg, Christian & Nielsen, Olaf, 2012, In: Current Biology. 22, 8, p. R271-R272 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Dissection of the functional domains of an archaeal holliday junction helicase

    Hong, Y., Chu, M., Li, Y., Ni, J., Sheng, D., Hou, G., She, Q. & Shen, Y., 2012, In: D N A Repair. 11, 2, p. 102-111 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    An archaeal protein evolutionarily conserved in prokaryotes is a zinc-dependent metalloprotease

    Hu, Y., Peng, N., Han, W., Mei, Y., Chen, Z., Feng, X., Liang, Y. X. & She, Q., 2012, In: Bioscience Reports. 32, p. 609-618 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Guidelines for the use and interpretation of assays for monitoring autophagy

    Klionsky, D. J., Abdalla, F. C., Abeliovich, H., Farkas, T., Frankel, Lisa, Høyer-Hansen, M., Jäätteä, M., Lund, Anders H., Olsson, S. & Petersen, Morten, 2012, In: Autophagy. 8, 4, p. 445-544 100 p.

    Research output: Contribution to journal › Review › Research › peer-review

  53. Published

    Order by disorder in plant signaling

    Kragelund, Birthe Brandt, Jensen, M. K. & Skriver, Karen, 2012, In: Trends in Plant Science. 17, 11, p. 625-632 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Exceptional thermal stability and organic solvent tolerance of an esterase expressed from a thermophilic host

    Mei, Y., Peng, N., Zhao, S., Hu, Y., Wang, H., Liang, Y. & She, Q., 2012, In: Applied Microbiology and Biotechnology. 93, 5, p. 1965-1974 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    A synthetic arabinose-inducible promoter confers high levels of recombinant protein expression in hyperthermophilic archaeon Sulfolobus islandicus

    Peng, N., Deng, Ling, Mei, Y., Jiang, D., Hu, Y., Awayez, M., Liang, Y. & She, Q., 2012, In: Applied and Environmental Microbiology. 78, 16, p. 5630-5637 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Archaeal viruses-novel, diverse and enigmatic

    Peng, Xu, Garrett, Roger Antony & She, Q., 2012, In: Science China Life Sciences. 55, 5, p. 422-433 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    The expression of one ankyrin pk2 allele of the WO prophage is correlated with the Wolbachia feminizing effect in isopods

    Pichon, S., Bouchon, D., Liu, C., Chen, L. & Garrett, Roger Antony, 2012, In: B M C Microbiology. 12, 55, 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    Live cell microscopy of DNA damage response in Saccharomyces cerevisiae

    Pinela da Silva, S. C., Gallina, I., Eckert-Boulet, N. V. & Lisby, Michael, 2012, DNA repair protocols. Springer Science+Business Media, p. 433-443 11 p. (Methods in Molecular Biology, Vol. 920).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  59. Published

    MAP kinase cascades in Arabidopsis innate immunity

    Rasmussen, M. W., Roux, M. E., Petersen, Morten & Mundy, J., 2012, In: Frontiers in Plant Science. 3, 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    Regulation of basal resistance by a powdery mildew-induced cysteine-rich receptor-like protein kinase in barley

    Rayapuram, C., Jensen, M. K., Maiser, F., Vikgren, E. L. J., Jensen, H. H., Rung, J. H., Gregersen, P. L., Schweizer, P., Collinge, David B. & Lyngkjær, M. F., 2012, In: Molecular Plant Pathology. 13, 2, p. 135-147 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    CRISPR/Cas and CRISPR/Cmr immune systems of archaea

    Shah, S. A., Vestergaard, G. A. & Garrett, Roger Antony, 2012, Regulatory RNAs in prokaryotes. Springer, p. 163-181 19 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  62. Published

    Mediator regulates non-coding RNA transcription at fission yeast centromeres

    Thorsen, M., Hansen, H., Venturi, M., Holmberg, Steen & Thon, Genevieve, 2012, In: Epigenetics & Chromatin. 5, p. 1-10 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  63. Published

    Ekstremernes herrer

    Uldahl, K. B. & Peng, Xu, 2012, In: Aktuel Naturvidenskab. 2012, 05, p. 28-29 2 p.

    Research output: Contribution to journal › Journal article › Research

  64. Published

    Histone H3 lysine 56 acetylation and the response to DNA replication fork damage

    Wurtele, H., Kaiser, G. S., Bacal, J., St-Hilaire, E., Lee, E., Tsao, S., Dorn, J., Maddox, P., Lisby, Michael, Pasero, P. & Verreault, A., 2012, In: Molecular and Cellular Biology. 32, 1, p. 154-172 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    Development of a Simvastatin Selection Marker for a Hyperthermophilic Acidophile, Sulfolobus islandicus

    Zheng, T., Huang, Q., Zhang, C., Ni, J., She, Q. & Shen, Y., 2012, In: Applied and Environmental Microbiology. 78, 2, p. 568-574 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    RNF8 and RNF168 but not HERC2 are required for DNA damage-induced ubiquitylation in chicken DT40 cells

    Østergaard, Vibe Hallundbæk, Pentzold, C., Pedersen, R. T., Iosif, S., Alpi, A., Bekker-Jensen, Simon Holst, Mailand, Niels & Lisby, Michael, 2012, In: D N A Repair. 11, 11, p. 892–905 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. 2011
  68. Published

    C68 from the Sulfolobus islandicus plasmid-virus pSSVx is a novel member of the AbrB-like transcription factor family

    Contursi, P., D'Ambrosio, K., Pirone, L., Pedone, E., Aucelli, T., She, Q., De Simone, G. & Bartolucci, S., 2011, In: Biochemical Journal. 435, 1, p. 157-66 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. Published

    Cell biology of homologous recombination in yeast

    Eckert-Boulet, N. V., Rothstein, R. & Lisby, Michael, 2011, DNA recombination: methods and protocols. Tsubouchi, H. (ed.). Springer, p. 523-536 14 p. (Methods in Molecular Biology, Vol. 745).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  70. Published

    AAA ATPase p529 of Acidianus two-tailed virus ATV and host receptor recognition

    Erdmann, S., Scheele, U. & Garrett, Roger Antony, 2011, In: Virology. 421, 1, p. 61-66 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    Nucleotide diversity and linkage disequilibrium of nine genes with putative effects on flowering time in perennial ryegrass (Lolium perenne L.)

    Fiil, A., Lenk, I., Petersen, K., Jensen, C. S., Nielsen, K. K., Schejbel, B., Andersen, J. R. & Lübberstedt, T., 2011, In: Plant Science. 180, 2, p. 228-237 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    Archaeal CRISPR-based immune systems: exchangeable functional modules

    Garrett, Roger Antony, Vestergaard, G. A. & Shah, S. A., 2011, In: Trends in Microbiology. 19, 11, p. 549-56 8 p.

    Research output: Contribution to journal › Review › Research › peer-review

  73. Published

    CRISPR-based immune systems of the Sulfolobales: complexity and diversity

    Garrett, Roger Antony, Shah, S. A., Vestergaard, G. A., Deng, Ling, Guðbergsdóttir, S. R., Kenchappa, C. S., Erdmann, S. & She, Q., 2011, In: Biochemical Society Transactions. 39, 1, p. 51-57 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    Dpb11/TopBP1 plays distinct roles in DNA replication, checkpoint response and homologous recombination

    Germann, S. M., Østergaard, Vibe Hallundbæk, Haas, C., Salis, P., Motegi, A. & Lisby, Michael, 2011, In: D N A Repair. 10, 2, p. 210-224 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    Genome Analyses of Icelandic Strains of Sulfolobus islandicus, Model Organisms for Genetic and Virus-Host Interaction Studies

    Guo, L., Brügger, K., Liu, C., Shah, S. A., Zheng, H., Zhu, Y., Wang, S., Lillestøl, R. K., Chen, L., Frank, J., Prangishvili, D., Paulin, L., She, Q., Huang, L. & Garrett, Roger Antony, 1 Apr 2011, In: Journal of Bacteriology. 193, 7, p. 1672-80 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector-borne viral and plasmid genes and protospacers

    Guðbergsdóttir, S. R., Deng, L., Chen, Z., Jensen, J. V. K., Jensen, L. R., She, Q. & Garrett, Roger Antony, 2011, In: Molecular Microbiology. 79, 1, p. 35-49 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    H3K9me-independent gene silencing in fission yeast heterochromatin by Clr5 and histone deacetylases

    Hansen, K. R., Hazan, I., Shanker, S., Watt, S., Hansen, J. V., Bähler, J., Martienssen, R. A., Partridge, J. F., Cohen, A. & Thon, Genevieve, 2011, In: P L o S Genetics. 7, 1, 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    Role of autophagy in disease resistance and hypersensitive response-associated cell death

    Hofius, D., Munch, D., Bressendorff, Simon, Mundy, J. & Petersen, Morten, 2011, In: Cell Death and Differentiation. 18, 8, p. 1257-1262 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    Phenylbutyrate inhibits homologous recombination induced by camptothecin and methyl methanesulfonate

    Kaiser, G. S., Germann, S. M., Westergaard, T. & Lisby, Michael, 2011, In: Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis. 713, 1-2, p. 64-75 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    Senescence-associated barley NAC (NAM, ATAF1,2, CUC) transcription factor interacts with radical-induced cell death 1 through a disordered regulatory domain

    Kjaersgaard, T., Jensen, M. K., Christiansen, M. W., Gregersen, P. L., Kragelund, Birthe Brandt & Skriver, Karen, 2011, In: Journal of Biological Chemistry. 286, 41, p. 35418-29 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Deletion of the topoisomerase III gene in the hyperthermophilic archaeon Sulfolobus islandicus results in slow growth and defects in cell cycle control

    Li, X., Guo, L., Deng, Ling, Feng, D., Ren, Y., Chu, Y., She, Q. & Huang, L., 2011, In: Journal of Genetics and Genomics. 38, 6, p. 253-9 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Structural and Functional Characterization of an Archaeal Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR)-associated Complex for Antiviral Defense (CASCADE)

    Lintner, N. G., Kerou, M., Brumfield, S. K., Graham, S., Liu, H., Naismith, J. H., Sdano, M., Peng, N., She, Q., Copié, V., Young, M. J., White, M. F. & Lawrence, C. M., 2011, In: The Journal of Biological Chemistry. 286, 24, p. 21643-56 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    A dimeric Rep protein initiates replication of a linear archaeal virus genome: implications for the Rep mechanism and viral replication

    Oke, M., Kerou, M., Liu, H., Peng, Xu, Garrett, Roger Antony, Prangishvili, D., Naismith, J. H. & White, M. F., 2011, In: Journal of Virology. 85, 2, p. 925-31 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    Generative probabilistic models extend the scope of inferential structure determination

    Olsson, S., Boomsma, Wouter, Frellsen, J., Bottaro, S., Harder, T. P., Ferkinghoff-Borg, J. & Hamelryck, Thomas Wim, 2011, In: Journal of Magnetic Resonance. 213, 1, p. 182-186 5 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  85. Published

    Archaeal promoter architecture and mechanism of gene activation

    Peng, N., Ao, X., Liang, Y. X. & She, Q., 19 Jan 2011, In: Biochemical Society Transactions. 39, 1, p. 99-103 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    Bird and plant companion species predict breeding and migrant habitats of the genus Oenanthe

    Pentzold, S., Pentzold, C. & Randler, C., 2011, In: Journal of Ecology and Field Biology. 34, 3, p. 287-293 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    Chaperone role for proteins p618 and p892 in the extracellular tail development of Acidianus two-tailed virus

    Scheele, U., Erdmann, S., Ungewickell, E. J., Felisberto-Rodrigues, C., Ortiz-Lombardía, M. & Garrett, Roger Antony, 2011, In: Journal of Virology. 85, 10, p. 4812-4821 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    CRISPR/Cas and Cmr modules, mobility and evolution of adaptive immune systems

    Shah, S. A. & Garrett, Roger Antony, 2011, In: Research in Microbiology. 162, 1, p. 27-38 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    Sulfolobus Turreted Icosahedral Virus c92 Protein Responsible for the Formation of Pyramid-Like Cellular Lysis Structures

    Snyder, J. C., Brumfield, S. K., Peng, N., She, Q. & Young, M. J., 2011, In: Journal of Virology. 85, 13, p. 6287-92 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    Schizosaccharomyces pombe Mms1 channels repair of perturbed replication into Rhp51 independent homologous recombination

    Vejrup-Hansen, R., Mizuno, K., Miyabe, I., Fleck, O., Holmberg, Christian, Murray, J. M., Carr, A. M. & Nielsen, Olaf, 2011, In: DNA Repair. 10, 3, p. 283-95 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    Genomic analysis of Acidianus hospitalis W1 a host for studying crenarchaeal virus and plasmid life cycles

    You, X. Y., Liu, C., Wang, S. Y., Jiang, C. Y., Shah, S. A., Prangishvili, D., She, Q., Liu, S. J. & Garrett, Roger Antony, 2011, In: Extremophiles. 15, p. 487-497 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    Phenotypic, proteomic, and genomic characterization of a putative ABC-transporter permease involved in Listeria monocytogenes biofilm formation

    Zhu, X., Liu, W., Lametsch, Rene, Aarestrup, F. M., Shi, C., She, Q., Shi, X. & Knoechel, Susanne, 2011, In: Foodborne Pathogens and Disease. 8, 4, p. 495-501 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    Morphological classification of plant cell deaths

    van Doorn, W. G., Beers, E. P., Dangl, J. L., Franklin-Tong, V. E., Gallois, P., Hara-Nishimura, I., Jones, A. M., Kawai-Yamada, M., Lam, E., Mundy, J., Mur, L. A. J., Petersen, Morten, Smertenko, A., Taliansky, M., Van Breusegem, F., Wolpert, T., Woltering, E., Zhivotovsky, B. & Bozhkov, P. V., 2011, In: Cell Death and Differentiation. 18, 8, p. 1241-1246 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. 2010
  95. Published

    Erratum: A two-step model for senescence triggered by a single critically short telomere: (Nature Cell Biol. (2009) 11 (988-993))

    Abdallah, P., Luciano, P., Runge, K. W., Lisby, Michael, Géli, V., Gilson, E. & Teixeira, M. T., May 2010, In: Nature Cell Biology. 12, 5, p. 520 1 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  96. Published

    Rad52 SUMOylation affects the efficiency of the DNA repair: [Inkl. Corrigendum]

    Altmannova, V., Eckert-Boulet, N., Arneric, M., Kolesar, P., Chaloupkova, R., Damborsky, J., Sung, P., Zhao, X., Lisby, Michael & Krejci, L., 2010, In: Nucleic Acids Research. 38, 14, p. 4708-4721 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    The transcription elongation factor Bur1-Bur2 interacts with replication protein A and maintains genome stability during replication stress

    Clausing, E., Mayer, A., Chanarat, S., Müller, B., Germann, S. M., Cramer, P., Lisby, Michael & Strässer, K., 31 Dec 2010, In: Journal of Biological Chemistry. 285, 53, p. 41665-41674 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    Transcription termination in the plasmid/virus hybrid pSSVx from Sulfolobus islandicus

    Contursi, P., Cannio, R. & She, Q., 1 Sep 2010, In: Extremophiles. 14, 5, p. 453-63 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Regulation of homologous recombination at telomeres in budding yeast

    Eckert-Boulet, N. & Lisby, Michael, 10 Sep 2010, In: F E B S Letters. 584, 17, p. 3696-3702 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    RNAi and heterochromatin repress centromeric meiotic recombination

    Ellermeier, C., Higuchi, E. C., Phadnis, N., Holm, L., Geelhood, J. L., Thon, Genevieve & Smith, G. R., 11 May 2010, In: Proceedings of the National Academy of Sciences USA (PNAS). 107, 19, p. 8701-5 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  101. Published

    Metagenomic analyses of novel viruses and plasmids from a cultured environmental sample of hyperthermophilic neutrophiles

    Garrett, Roger Antony, Prangishvili, D., Shah, S. A., Reuter, M., Stetter, K. O. & Peng, Xu, 1 Nov 2010, In: Environmental Microbiology. 12, 11, p. 2918-30 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  102. Published

    Getting the best out of long-wavelength X-rays: de novo chlorine/sulfur SAD phasing of a structural protein from ATV

    Goulet, A., Vestergaard, G. A., Felisberto-Rodrigues, C., Campanacci, V., Garrett, Roger Antony, Cambillau, C. & Ortiz-Lombardía, M., 2010, In: Acta Crystallographica. Section D: Biological Crystallography. 66, Pt 3, p. 304-308 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  103. Published

    MicroRNA-145 targets YES and STAT1 in colon cancer cells

    Gregersen, Lea Haarup, Jacobsen, A. B., Frankel, Lisa, Wen, J., Krogh, Anders & Lund, Anders H., 2010, In: PLoS ONE. 5, 1, p. e8836

    Research output: Contribution to journal › Journal article › Research › peer-review

  104. Published

    Adaptation to diverse nitrogen-limited environments by deletion or extrachromosomal element formation of the GAP1 locus

    Gresham, D., Usaite, R., Germann, S. M., Lisby, Michael, Botstein, D. & Regenberg, Birgitte, 2010, In: Proceedings of the National Academy of Science of the United States of America. 107, 43, p. 18551-6 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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