Functional Genomics

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  1. Published

    Emerging roles of the CIP2A–TopBP1 complex in genome integrity

    Ummethum, Henning Ole, Li, Jiayi, Lisby, Michael & Østergaard, Vibe Hallundbæk, 2023, In: NAR Cancer. 5, 4, 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Recognition of extremophilic archaeal viruses by eukaryotic cells: a promising nanoplatform from the third domain of life

    Uldahl, K. B., Wu, L., Hall, A., Papathanasiou, P., Peng, Xu & Moghimi, S. M., 2016, In: Scientific Reports. 6, 37966.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Biology, biodiversity and application potential of thermophilic viruses

    Uldahl, K. B. & Peng, Xu, 2013, Thermophilic Microbes in Environmental and Industrial Biotechnology: Biotechnology of Thermophiles. Satyanarayana, T., Littlechild, J. & Kawarabayasi, Y. (eds.). Springer, p. 271-304 34 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  4. Published

    Life cycle characterization of Sulfolobus monocaudavirus 1, an extremophilic spindle-shaped virus with extracellular tail development

    Uldahl, K. B., Jensen, S. B., Bhoobalan, Yuvaraj, Martinez Alvarez, Laura, Papathanasiou, P. & Peng, Xu, Jun 2016, In: Journal of Virology. 90, 12, p. 5693-5699 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Ekstremernes herrer

    Uldahl, K. B. & Peng, Xu, 2012, In: Aktuel Naturvidenskab. 2012, 05, p. 28-29 2 p.

    Research output: Contribution to journal › Journal article › Research

  6. Published

    Hyperthermophilic Archaeal Viruses as Novel Nanoplatforms

    Uldahl, K. B., 2015, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  7. Published

    SMV1, an extremely stable thermophilic virus platform for nanoparticle trafficking in the mammalian GI tract

    Uldahl, K. B., Walk, S. T., Olshefsky, S. C., Young, M. J. & Peng, Xu, Nov 2017, In: Journal of Applied Microbiology. 123, 5, p. 1286-1297 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    The fission yeast heterochromatin protein Rik1 is required for telomere clustering during meiosis

    Tuzon, C. T., Borgstrøm, B., Weilguny, D., Egel, Richard, Cooper, J. P. & Nielsen, Olaf, 2004, In: Journal of Cell Biology. 165, 6, p. 759-65 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Intramolecular Interactions Dominate the Autoregulation of Escherichia coli Stringent Factor RelA

    Turnbull, K. J., Dzhygyr, I., Lindemose, Søren, Hauryliuk, V. & Roghanian, Mohammad, 2019, In: Frontiers in Microbiology. 10, 12 p., 1966.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    HicA toxin of Escherichia coli derepresses hicAB transcription to selectively produce HicB antitoxin

    Turnbull, K. & Gerdes, K., Jun 2017, In: Molecular Microbiology. 104, 5, p. 781-792 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Analysis of Escherichia coli mutants with altered DNA content

    Trun, N. J., Gottesman, S. & Løbner-Olesen, Anders, 1991, In: Cold Spring Harbor Symposia on Quantitative Biology. 56, p. 353-8 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Transcriptome-Wide Analysis of Protein-RNA and RNA-RNA Interactions in Pathogenic Bacteria

    Tree, J. J., Gerdes, K. & Tollervey, D., 2018, High-Density Sequencing Applications in Microbial Molecular Genetics. Carpousis, A. J. (ed.). Academic Press, Vol. 612. p. 467-488 (Methods in Enzymology).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  13. Published

    Establishment of expression-state boundaries by Rif1 and Taz1 in fission yeast

    Toteva, T., Mason, B., Kanoh, Y., Brøgger, P., Green, D., Hansen, J. V., Masai, H. & Thon, Genevieve, 31 Jan 2017, In: Proceedings of the National Academy of Sciences of the United States of America. 114, 5, p. 1093-1098 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Anaphase onset before complete DNA replication with intact checkpoint responses.

    Torres-Rosell, J., De Piccoli, G., Cordon-Preciado, V., Farmer, S., Jarmuz, A., Machin, F., Pasero, P., Lisby, Michael, Haber, J. E. & Aragón, L., 2007, In: Science. 315, 5817, p. 1411-5 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    The Smc5-Smc6 complex and SUMO modification of Rad52 regulates recombinational repair at the ribosomal gene locus.

    Torres-Rosell, J., Sunjevaric, I., De Piccoli, G., Sacher, M., Eckert-Boulet, N., Reid, R., Jentsch, S., Rothstein, R., Aragón, L. & Lisby, Michael, 2007, In: Nature Cell Biology. 9, 8, p. 923-31 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Structure of Leptin Receptor Related with Obesity

    Toleikis, Z., 2014, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  17. Published

    Synchronized switching of multiple toxin-antitoxin modules by (p)ppGpp fluctuation

    Tian, C., Semsey, S. & Mitarai, Namiko, 21 Aug 2017, In: Nucleic Acids Research. 45, 14, p. 8180-8189 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Rapid Curtailing of the Stringent Response by Toxin-Antitoxin Encoded mRNases

    Tian, C., Roghanian, Mohammad, Jørgensen, M. G., Sneppen, Kim, Sørensen, Michael Askvad, Gerdes, K. & Mitarai, Namiko, Jul 2016, In: Journal of Bacteriology. 198, 14, p. 1918-1926

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Organization and expression of genes in the genomic region surrounding the glutamine synthetase gene Gln1 from Lotus japonicus

    Thykjaer, T., Danielsen, D., She, Q. & Stougaard, J., 1997, In: Molecular Genetics and Genomics. 255, 6, p. 628-36 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Mediator regulates non-coding RNA transcription at fission yeast centromeres

    Thorsen, M., Hansen, H., Venturi, M., Holmberg, Steen & Thon, Genevieve, 2012, In: Epigenetics & Chromatin. 5, p. 1-10 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Autoimmunity in Plants: Guards with a License to Kill

    Thorgrimsen, S. P., 2009, Copenhagen University. Department of Biology: Museum Tusculanum. 91 p.

    Research output: Book/Report › Ph.D. thesis › Research

  22. Published

    The clr1 locus regulates the expression of the cryptic mating-type loci of fission yeast

    Thon, Genevieve & Klar, A., 1992, In: Genetics. 131, 2, p. 287-296 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Directionality of fission yeast mating-type interconversion is controlled by the location of the donor loci

    Thon, Genevieve, 1993, In: Genetics. 134, 4, p. 1045-1054 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Histone modifications: Cycling with chromosomal replication

    Thon, Genevieve, 2008, In: Current Biology. 18, 9, p. 380-382 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Antigenic diversity by the recombination of pseudogenes

    Thon, Genevieve, Baltz, T. & Eisen, H., 1989, In: Genes & Development. 3, 8, p. 1247-1254 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Mating-type switching by homology-directed recombinational repair: a matter of choice

    Thon, Genevieve, Maki, T., Haber, J. E. & Iwasaki, H., 2019, In: Current Genetics. 65, 2, p. 351-362

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Three additional linkage groups that repress transcription and meiotic recombination in the mating-type region of Schizosaccharomyces pombe

    Thon, Genevieve, Cohen, A. & Klar, A., 1994, In: Genetics. 138, 1, p. 29-38 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Trypanosome variable surface glycoproteins: composite genes and order of expression

    Thon, Genevieve, Baltz, T., Giroud, C. & Eisen, H., 1990, In: Genes & Development. 4, 8, p. 1374-1383 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Competing to destroy: a fight between two RNA-degradation systems

    Thon, Genevieve, 2008, In: Nature Structural and Molecular Biology. 15, 10, p. 1001-2 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    The lantibiotic NAI-107 efficiently rescues Drosophila melanogaster from infection with methicillin-resistant Staphylococcus aureus USA300

    Thomsen, T. T., Mojsoska, B., Cruz, J. C. S., Donadio, S., Jenssen, H., Løbner-Olesen, Anders & Rewitz, Kim, 2016, In: Antimicrobial Agents and Chemotherapy. 60, 9, p. 5427-5436 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Analogues of a Cyclic Antimicrobial Peptide with a Flexible Linker Show Promising Activity Against Pseudomonas aeruginosa and Staphylococcus aureus

    Thomsen, T. T., Mendel, H. C., Al-Mansour, W., Oddo, A., Løbner-Olesen, Anders & Hansen, Paul Robert, 2020, In: Antibiotics. 9, 7, 13 p., 366.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Rapid selection of Plasmodium falciparum chloroquine resistance transporter gene and multidrug resistance gene-1 haplotypes associated with past chloroquine and present artemether-lumefantrine use in Inhambane District, southern Mozambique

    Thomsen, T. T., Madsen, L. B., Hansson, Helle Smedegaard, Tomás, E. V. E., Charlwood, D., Bygbjerg, Ib Christian & Alifrangis, Michael, Mar 2013, In: American Journal of Tropical Medicine and Hygiene. 88, 3, p. 536-41 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Comprehensive profiling of the fission yeast transcription start site activity during stress and media response

    Thodberg, Malte, Thieffry, A., Lange, Jette Bornholdt, Boyd, M., Holmberg, Christian, Azad, A., Workman, C. T., Chen, Y., Ekwall, K., Nielsen, Olaf & Sandelin, Albin Gustav, 28 Feb 2019, In: Nucleic Acids Research. 47, 4, p. 1671-1691 21 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Escherichia coli belonging to ST131 rarely transfers blactx-m-15 to fecal Escherichia coli

    Thingholm, K. R., Hertz, F. B., Løbner-Olesen, Anders, Frimodt-Møller, N. & Nielsen, K. L., 2019, In: Infection and Drug Resistance. 12, p. 2429-2435

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    KBERG: KnowledgeBase for Estrogen Responsive Genes.

    Tang, S., Zhang, Z., Tan, S. L., Tang, M. E., Kumar, A. P., Ramadoss, S. K. & Bajic, V. B., 2007, In: Nucleic Acids Research. 35, Database issue, p. D732-6

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Computational method for discovery of estrogen responsive genes.

    Tang, S., Tan, S. L., Ramadoss, S. K., Kumar, A. P., Tang, M. E. & Bajic, V. B., 2004, In: Nucleic Acids Research. 32, 21, p. 6212-7 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    BayesMD: Flexible Biological Modeling for Motif Discovery

    Tang, M. E., Krogh, Anders & Winther, Ole, 2008, In: Journal of Computational Biology. 15, 10, p. 1347-63 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Computational methods for exploration and prediction of regulatory elements in RNA Polymerase II promoters

    Tang, M. E., 2009, Biologisk Institut: Museum Tusculanum. 127 p.

    Research output: Book/Report › Ph.D. thesis › Research

  39. Published

    Spironolactone induces apoptosis and inhibits NF-kappaB independent of the mineralocorticoid receptor

    Sønder, S. U. S., Woetmann, Anders , Ødum, Niels & Bendtzen, K., 2006, In: Apoptosis. 11, 12, p. 2159-65 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    CRP Interacts Specifically With Sxy to Activate Transcription in Escherichia coli

    Søndberg, E., Sinha, A. K., Gerdes, K. & Semsey, S., 2019, In: Frontiers in Microbiology. 10, 8 p., 2053.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Salmonella Typhimurium undergoes distinct genetic adaption during chronic infections of mice

    Søndberg, E. & Jelsbak, L., 2016, In: BMC Microbiology. 16, 11 p., 30.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Mechanisms and regulation of mitotic recombination in Saccharomyces cerevisiae

    Symington, L. S., Rothstein, R. & Lisby, Michael, 2014, In: Genetics (Print). 198, 3, p. 795-835 41 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Novel method for quantitative estimation of biofilms

    Syal, K., Oct 2017, In: Current Microbiology. 74, 10, p. 1194-1199 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Gene Expression Changes with Minor Effects on the Population Average Have Major Effects on the Occurrence of Cells with Extreme Protein Concentrations

    Svenningsen, Mikkel Skjoldan, Semsey, S. & Mitarai, Namiko, 2019, In: mSphere. 4, 1, p. 1-6 e00575-18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Birth and Resuscitation of (p)ppGpp Induced Antibiotic Tolerant Persister Cells

    Svenningsen, Mikkel Skjoldan, Veress, A., Harms, A., Mitarai, Namiko & Semsey, S., 15 Apr 2019, In: Scientific Reports. 9, 13 p., 6056.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line

    Suzuki, H., Forrest, A. R. R., van Nimwegen, E., Daub, C. O., Balwierz, P. J., Irvine, K. M., Lassmann, T., Ravasi, T., Hasegawa, Y., de Hoon, M. J. L., Katayama, S., Schroder, K., Carninci, P., Tomaru, Y., Kanamori-Katayama, M., Kubosaki, A., Akalin, A., Ando, Y., Arner, E., Asada, M. & 31 others, Asahara, H., Bailey, T., Bajic, V. B., Bauer, D., Beckhouse, A. G., Bertin, N., Björkegren, J., Brombacher, F., Bulger, E., Chalk, A. M., Chiba, J., Cloonan, N., Dawe, A., Dostie, J., Engström, P. G., Essack, M., Faulkner, G. J., Fink, J. L., Fredman, D., Fujimori, K., Furuno, M., Gojobori, T., Gough, J., Grimmond, S. M., Jacobsen, A., Krogh, Anders, Nygaard, S., Sandelin, Albin Gustav, Valen, E., Winther, Ole & Riken Omics Science Center, R. O. S. C., 2009, In: Nature Genetics. 41, 5, p. 553-62 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Insights into Vibrio parahaemolyticus CHN25 response to artificial gastric fluid stress by transcriptomic analysis

    Sun, X., Liu, T., Peng, Xu & Chen, L., 2014, In: International Journal of Molecular Sciences (Online). 15, 12, p. 22539-22562 24 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    An Orc1/Cdc6 ortholog functions as a key regulator in the DNA damage response in Archaea

    Sun, M., Feng, X., Liu, Z., Han, W., Liang, Y. X. & She, Q., 2018, In: Nucleic Acids Research. 46, 13, p. 6697-6711

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Functions of Orc1-2 in the DNA damageresponsive regulation in Sulfolobus islandicus

    Sun, M., 2019, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  50. Published

    Transcriptomes of the desiccation-tolerant resurrection plant Craterostigma plantagineum

    Suarez Rodriguez, M. C., Edsgärd, D., Hussain, S. S., Alquezar Planas, D. E., Rasmussen, M., Gilbert, M Thomas P, Nielsen, B. H., Bartels, D. & Mundy, J., Jul 2010, In: The Plant Journal. 63, 2, p. 212-228 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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