Functional Genomics

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  1. 2020
  2. Published

    Short-term kinetics of rRNA degradation in Escherichia coli upon starvation for carbon, amino acid, or phosphate

    Fessler, M., Gummesson, Bertil, Charbon, Godefroid, Svenningsen, Sine Lo & Sørensen, Michael Askvad, 2020, In: Molecular Microbiology. 113, 5, p. 951-963 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Antimicrobial and Antivirulence Action of Eugenia brejoensis Essential Oil in vitro and in vivo Invertebrate Models

    Filho, C. M. B., da Silva, L. C. N., da Silva, M. V., Løbner-Olesen, Anders, Struve, C., Krogfelt, K. A., Correia, M. T. D. S. & Oliva, M. L. V., 2020, In: Frontiers in Microbiology. 11, 11 p., 424.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Diversity of type II toxin-antitoxin systems of enterobacteria and their contribution to antibiotic persistence

    Fino, C., 2020, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  5. Published

    PasT of Escherichia coli sustains antibiotic tolerance and aerobic respiration as a bacterial homolog of mitochondrial Coq10

    Fino, C., Vestergaard, M., Ingmer, Hanne, Pierrel, F., Gerdes, K. & Harms, A., 2020, In: MicrobiologyOpen. 9, 8, 36 p., e1064.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Virulence, Resistance, and Genomic Fingerprint Traits of Vibrio cholerae Isolated from 12 Species of Aquatic Products in Shanghai, China

    Fu, H., Yu, P., Liang, W., Kan, B., Peng, Xu & Chen, L., 2020, In: Microbial Drug Resistance. 26, 12, p. 1526-1539 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Archaeal Viruses and Their Interactions with CRISPR-Cas Systems

    Garrett, Roger Antony, Shah, S. A., Martinez Alvarez, Laura & Peng, Xu, 2020, Biocommunication of Phages. 1 ed. Springer, p. 199-220 22 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  8. Published

    Thresholds for clinical importance were defined for the European Organisation for Research and Treatment of Cancer Computer Adaptive Testing Core-an adaptive measure of core quality of life domains in oncology clinical practice and research

    Giesinger, J. M., Loth, F. L. C., Aaronson, N. K., Arraras, J. I., Caocci, G., Efficace, F., Grønvold, Mogens, van Leeuwen, M., Petersen, Morten, Ramage, J., Tomaszewski, K. A., Young, T., Holzner, B. & EORTC Quality of Life Group, E. Q. O. L. G., 2020, In: Journal of Clinical Epidemiology. 117, p. 117-125 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Thresholds for clinical importance were established to improve interpretation of the EORTC QLQ-C30 in clinical practice and research

    Giesinger, J. M., Loth, F. L. C., Aaronson, N. K., Arraras, J. I., Caocci, G., Efficace, F., Grønvold, Mogens, van Leeuwen, M., Petersen, Morten, Ramage, J., Tomaszewski, K. A., Young, T., Holzner, B. & EORTC Quality of Life Group, E. Q. O. L. G., 2020, In: Journal of Clinical Epidemiology. 118, p. 1-8 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Valine-Induced Isoleucine Starvation in Escherichia coli K-12 Studied by Spike-In Normalized RNA Sequencing

    Gummesson, Bertil, Shah, S. A., Borum, A. S., Fessler, M., Mitarai, Namiko, Sørensen, Michael Askvad & Svenningsen, Sine Lo, 2020, In: Frontiers in Genetics. 11, 17 p., 144.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Effects of Antibiotics on the Intestinal Microbiota of Mice

    Hertz, F. B., Budding, A. E., van der Lugt-Degen, M., Savelkoul, P. H., Løbner-Olesen, Anders & Frimodt-Møller, N., 2020, In: Antibiotics. 9, 4, 11 p., 191.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Type II and type IV toxin-antitoxin systems show different evolutionary patterns in the global Klebsiella pneumoniae population

    Horesh, G., Fino, C., Harms, A., Dorman, M. J., Parts, L., Gerdes, K., Heinz, E. & Thomson, N. R., 2020, In: Nucleic Acids Research. 48, 8, p. 4357-4370 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Novel Cyclic Lipopeptide Antibiotics: Effects of Acyl Chain Length and Position

    Jensen, S. K., Thomsen, T. T., Oddo, A., Franzyk, Henrik, Løbner-Olesen, Anders & Hansen, Paul Robert, 2020, In: International Journal of Molecular Sciences . 21, 16, 18 p., 5829.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Mutations in a Single Signaling Pathway Allow Cell Growth in Heavy Water

    Kampmeyer, Caroline, Johansen, Jens Vilstrup, Holmberg, Christian, Karlson, M., Andersen, Sarah Gersing, Nunes Bordallo, Heloisa, Kragelund, Birthe Brandt, Lerche, M. H., Jourdain, I., Winther, Jakob R. & Hartmann-Petersen, Rasmus, 2020, In: A C S Synthetic Biology. 9, 4, p. 733-748 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants

    Li, L., Wang, S., Wang, H., Sahu, S. K., Marin, B., Li, H., Xu, Y., Liang, H., Li, Z., Cheng, S., Reder, T., Çebi, Z., Wittek, S., Petersen, M., Melkonian, B., Du, H., Yang, H., Wang, J., Wong, G. K-S., Xu, X. & 4 others, Liu, X., Van de Peer, Y., Melkonian, M. & Liu, Huan, 2020, In: Nature Ecology and Evolution. 4, 9, p. 1220-1231

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    The Draft Genome of Coelastrum proboscideum (Sphaeropleales, Chlorophyta)

    Liang, H., Wang, H., Xu, Y., Li, L., Melkonian, B., Lorenz, M., Friedl, T., Sahu, S. K., Yu, J., Liu, Huan, Melkonian, M. & Wang, S., 2020, In: Protist. 171, 5, 7 p., 125758.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Characterization of a novel type III CRISPR-Cas effector provides new insights into the allosteric activation and suppression of the Cas10 DNase

    Lin, Jinzhong, Feng, M., Zhang, H. & She, Q., 2020, In: Cell Discovery. 6, 16 p., 29.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    DNA targeting by subtype I-D CRISPR-Cas shows type I and type III features

    Lin, Jinzhong, Fuglsang, Anders, Kjeldsen, A. L., Sun, K., Bhoobalan, Yuvaraj & Peng, Xu, 2020, In: Nucleic Acids Research. 48, 18, p. 10470-10478 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Protocol for Purification of Human ZGRF1 and Its Regulatory Function on RAD51-Mediated D-Loop Formation

    Lisby, Michael & Xue, X., 2020, In: STAR Protocols. 1, 2

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    A CRISPR-associated factor Csa3a regulates DNA damage repair in Crenarchaeon Sulfolobus islandicus

    Liu, Z., Sun, M., Liu, J., Liu, T., Ye, Q., Li, Y. & Peng, N., 2020, In: Nucleic Acids Research. 48, 17, p. 9681-9693 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Design and Combinatorial Development of Shield-1 Peptide Mimetics Binding to Destabilized FKBP12

    Madsen, D., Jørgensen, F. P., Palmer, D., Roux, M. E., Olsen, J. V., Bols, Mikael, Schoffelen, S., Diness, Frederik & Meldal, Morten Peter, 2020, In: ACS Combinatorial Science. 22, 3, p. 156-164

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Evolutionary classification of CRISPR-Cas systems: a burst of class 2 and derived variants

    Makarova, K. S., Wolf, Y. I., Iranzo, J., Shmakov, S. A., Alkhnbashi, O. S., Brouns, S. J. J., Charpentier, E., Cheng, D., Haft, D. H., Horvath, P., Moineau, S., Mojica, F. J. M., Scott, D., Shah, S. A., Siksnys, V., Terns, M. P., Venclovas, Č., White, M. F., Yakunin, A. F., Yan, W. & 6 others, Zhang, F., Garrett, Roger Antony, Backofen, R., van der Oost, J., Barrangou, R. & Koonin, E. V., 2020, In: Nature Reviews. Microbiology. 18, p. 67-83

    Research output: Contribution to journal › Review › Research › peer-review

  23. Published

    Structural basis for inhibition of an archaeal CRISPR–Cas type I-D large subunit by an anti-CRISPR protein

    Manav, M. C., Van, L. B., Lin, Jinzhong, Fuglsang, Anders, Peng, Xu & Brodersen, D. E., 2020, In: Nature Communications. 11, 10 p., 5993.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Anti-CRISPR Proteins in Archaea

    Peng, Xu, Mayo-Muñoz, D., Bhoobalan, Yuvaraj & Martinez Alvarez, Laura, 2020, In: Trends in Microbiology. 28, 11, p. 913-921 9 p.

    Research output: Contribution to journal › Review › Research › peer-review

  25. Published

    Type IV CRISPR-Cas systems are highly diverse and involved in competition between plasmids

    Pinilla Redondo, Rafael, Mayo-Muñoz, D., Russel, J., Garrett, Roger Antony, Randau, L., Sørensen, Søren Johannes & Shah, S. A., 2020, In: Nucleic Acids Research. 48, 4, p. 2000-2012 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Inhibition of Escherichia coli chromosome replication by rifampicin treatment or during the stringent response is overcome by de novo DnaA protein synthesis

    Riber, Leise & Løbner-Olesen, Anders, 2020, In: Molecular Microbiology. 114, 6, p. 906-919

    Research output: Contribution to journal › Journal article › Research › peer-review

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