- 2007
- Published
Editing modifies the GABA(A) receptor subunit alpha3.
Ohlson, J., Pedersen, J. S., Haussler, D. & Ohman, M., 2007, In: RNA: A publication of the RNA Society. 13, 5, p. 698-703 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium
Clark, A. G., Eisen, M. B., Smith, D. R., Bergman, C. M., Oliver, B., Markow, T. A., Kaufman, T. C., Kellis, M., Gelbart, W., Iyer, V. N., Pollard, D. A., Sackton, T. B., Larracuente, A. M., Singh, N. D., Abad, J. P., Abt, D. N., Adryan, B., Aguade, M., Akashi, H., Anderson, W. W. & 31 others, , 2007, In: Nature. 450, 7167, p. 203-18 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
FOXP3+ regulatory T cells in cutaneous T-cell lymphomas: association with disease stage and survival
Gjerdrum, L. M., Woetmann, Anders , Ødum, Niels, Burton, C. M., Rossen, K., Skovgaard, G. L., Ryder, L. P. & Ralfkiaer, E., 2007, In: Leukemia. 21, 12, p. 2512-2518 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fission yeast goes synthetic.
Nielsen, Olaf, 2007, In: Nature Methods. 4, 10, p. 777-8 1 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Four weeks one-leg training and high fat diet does not alter PPAR alpha protein or mRNA expression in human skeletal muscle
Helge, Jørn Wulff, Bentley, D., Schjerling, Peter, Willer, M., Gibala, M. J., Franch, J., Tapia-Laliena, M. A., Daugaard, J. R. & Andersen, J. L., 2007, In: European Journal of Applied Physiology. 101, 1, p. 105-114 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Functional and evolutionary analysis of alternatively spliced genes is consistent with an early eukaryotic origin of alternative splicing.
Irimia, M., Rukov, J. L., Penny, D. & Roy, S. W., 2007, In: BMC Evolutionary Biology. 7, p. 188Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome of the Acidianus bottle-shaped virus and insights into the replication and packaging mechanisms
Peng, Xu, Basta, T., Häring, M., Garrett, Roger Antony & Prangishvili, D., 2007, In: Virology. 364, 1, p. 237-43 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome-wide analysis of Rad52 foci reveals diverse mechanisms impacting recombination.
Alvaro, D., Lisby, Michael & Rothstein, R., 2007, In: PLoS Genetics. 3, 12, p. e228Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome-wide identification of estrogen receptor alpha-binding sites in mouse liver.
Gao, H., Fält, S., Sandelin, Albin Gustav, Gustafsson, J. & Dahlman-Wright, K., 2007, In: Molecular Endocrinology. 22, 1, p. 10-22 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.
Birney, E., Stamatoyannopoulos, J. A., Dutta, A., Guigó, R., Gingeras, T. R., Margulies, E. H., Weng, Z., Snyder, M., Dermitzakis, E. T., Thurman, R. E., Kuehn, M. S., Taylor, C. M., Neph, S., Koch, C. M., Asthana, S., Malhotra, A., Adzhubei, I., Greenbaum, J. A., Andrews, R. M., Flicek, P. & 36 others, , 2007, In: Nature. 447, 7146, p. 799-816 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
KBERG: KnowledgeBase for Estrogen Responsive Genes.
Tang, S., Zhang, Z., Tan, S. L., Tang, M. E., Kumar, A. P., Ramadoss, S. K. & Bajic, V. B., 2007, In: Nucleic Acids Research. 35, Database issue, p. D732-6Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mammalian RNA polymerase II core promoters: insights from genome-wide studies.
Sandelin, Albin Gustav, Carninci, P., Lenhard, B., Ponjavic, J., Hayashizaki, Y. & Hume, D. A., 2007, In: Nature Reviews. Genetics. 8, 6, p. 424-36 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Molecular composition of IMP1 ribonucleoprotein granules.
Jønson, L., Vikesaa, J., Krogh, Anders, Nielsen, Lars Kamp, Hansen, T. V., Borup, R., Johnsen, A. H., Christiansen, Jan & Nielsen, Finn Cilius, 2007, In: Molecular and Cellular Proteomics. 6, 5, p. 798-811 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Nonmalignant T cells stimulate growth of T-cell lymphoma cells in the presence of bacterial toxins
Woetmann, Anders , Lovato, P., Eriksen, K. W., Krejsgaard, T., Labuda, T., Zhang, Q., Mathiesen, A., Geisler, Carsten, Svejgaard, A., Wasik, M. A. & Ødum, Niels, 2007, In: Blood. 109, 8, p. 3325-32 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Novel bacterial sulfur oxygenase reductases from bioreactors treating gold-bearing concentrates
Chen, Z., Liu, Y., Wu, J., She, Q., Jiang, C. & Liu, S., 2007, In: Applied Microbiology and Biotechnology. 74, 3, p. 688-98 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Phylogeography, hybridization and Pleistocene refugia of the kob antelope (Kobus kob)
Lorenzen, E. D., De Neergaard, R., Arctander, P. & Siegismund, Hans Redlef, 2007, In: Molecular Ecology. 16, 15, p. 3241-52 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Population genetic structure of the common warthog (Phacochoerus africanus) in Uganda: evidence for a strong philopatry among warthogs and social structure breakdown in a disturbed population
Muwanka, V. B., Nyakaana, S., Siegismund, Hans Redlef & Arctander, P., 2007, In: African Journal of Ecology. 45, 1, p. 22-30Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rad52 and Rad59 exhibit both overlapping and distinct functions
Feng, Q., Düring, L., Mayolo, A. A. D., Lettier, G., Lisby, Michael, Erdeniz, N., Mortensen, U. H. & Rothstein, R., 2007, In: DNA Repair. 6, 1, p. 27-37Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rad52 and Rad59 exhibit both overlapping and distinct functions
Feng, Q., Düring, L., de Mayolo, A. A., Buchhorn, G. L., Lisby, Michael, Erdeniz, N., Mortensen, U. H. & Rothstein, R., 2007, In: DNA Repair. 6, 1, p. 27-37 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rad52 multimerization is important for its nuclear localization in Saccharomyces cerevisiae.
Plate, I., Albertsen, L., Lisby, Michael, Hallwyl, S. C. L., Feng, Q., Seong, C., Rothstein, R., Sung, P. & Mortensen, U. H., 2007, In: DNA Repair. 7, 1, p. 57-66 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Stability of Barley stripe mosaic virus-induced gene silencing in barley.
Bruun-Rasmussen, M., Madsen, C. T., Jessing, S. & Albrechtsen, M. T., 2007, In: Molecular Plant - Microbe Interactions. 20, 11, p. 1323-31 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Structured RNAs in the ENCODE selected regions of the human genome.
Washietl, S., Pedersen, J. S., Korbel, J. O., Stocsits, C., Gruber, A. R., Hackermüller, J., Hertel, J., Lindemeyer, M., Reiche, K., Tanzer, A., Ucla, C., Wyss, C., Antonarakis, S. E., Denoeud, F., Lagarde, J., Drenkow, J., Kapranov, P., Gingeras, T. R., Guigó, R., Snyder, M. & 4 others, , 2007, In: Genome Research. 17, 6, p. 852-64 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Slx5-Slx8 complex affects sumoylation of DNA repair proteins and negatively regulates recombination.
Burgess, R. C., Rahman, S., Lisby, Michael, Rothstein, R. & Zhao, X., 2007, In: Molecular and Cellular Biology. 27, 17, p. 6153-62 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Smc5-Smc6 complex and SUMO modification of Rad52 regulates recombinational repair at the ribosomal gene locus.
Torres-Rosell, J., Sunjevaric, I., De Piccoli, G., Sacher, M., Eckert-Boulet, N., Reid, R., Jentsch, S., Rothstein, R., Aragón, L. & Lisby, Michael, 2007, In: Nature Cell Biology. 9, 8, p. 923-31 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The UCSC Genome Browser Database: 2008 update.
Karolchik, D., Kuhn, R. M., Baertsch, R., Barber, G. P., Clawson, H., Diekhans, M., Giardine, B., Harte, R. A., Hinrichs, A. S., Hsu, F., Kober, K. M., Miller, W., Pedersen, J. S., Pohl, A., Raney, B. J., Rhead, B., Rosenbloom, K. R., Smith, K. E., Stanke, M., Thakkapallayil, A. & 5 others, , 2007, In: Nucleic Acids Research. 36, Database issue, p. D773-9Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The genome of Hyperthermus butylicus: a sulfur-reducing, peptide fermenting, neutrophilic Crenarchaeote growing up to 108 degrees C
Brügger, K., Chen, L., Stark, M., Zibat, A., Redder, P., Ruepp, A., Awayez, M., She, Q., Garrett, Roger Antony & Klenk, H., 2007, In: Archaea. 2, 2, p. 127-35 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Theoretical analysis of epigenetic cell memory by nucleosome modification
Dodd, I. B., Micheelsen, M. A., Sneppen, Kim & Thon, Genevieve, 2007, In: Cell. 129, 4, p. 813-22 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Transcriptional Analysis of the Genetic Element pSSVx: Differential and Temporal Regulation of Gene Expression Reveals Correlation between Transcription and Replication
Contursi, P., Cannio, R., Prato, S., She, Q., Rossi, M. & Bartolucci, S., 2007, In: Journal of Bacteriology. 189, 17, p. 6339-50 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Using an alignment of fragment strings for comparing protein structures.
Friedberg, I., Harder, T., Kolodny, R., Sitbon, E., Li, Z. & Godzik, A., 2007, In: Bioinformatics. 23, 2, p. e219-24Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The cell biology of mitotic recombination in saccharomyces cerevisiae
Lisby, Michael & Rothstein, R., 2 May 2007, Molecular Genetics of Recombination. Aquilera, A. & Rothstein, R. (eds.). p. 335-362 28 p. (Topics in Current Genetics, Vol. 17).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
New locus important for Myxococcus social motility and development
Zhang, C. Y., Cai, K., Liu, H., ZHANG, YONG, Pan, H. W., Wang, B., Wu, Z. H., Hu, W. & Li, Y. Z., Nov 2007, In: Journal of Bacteriology. 189, 21, p. 7937-7941 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deubiquitination of FANCD2 Is Required for DNA Crosslink Repair
Østergaard, Vibe Hallundbæk, Langevin, F., Kuiken, H. J., Pace, P., Niedzwiedz, W., Simpson, L. J., Ohzeki, M., Takata, M., Sale, J. E. & Patel, K. J., 14 Dec 2007, In: Molecular Cell. 28, 5, p. 798-809 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2008
- Published
Arabidopsis MAP kinase 4 regulates gene expression through transcription factor release in the nucleus
Qiu, J., Fiil, Berthe Katrine, Petersen, K., Nielsen, H. B., Botanga, C. J., Thorgrimsen, S. P., Palma, K., Suarez Rodriguez, M. C., Sandbech-Clausen, S., Lichota, J., Brodersen, P., Grasser, K. D., Mattsson, O., Glazebrook, J., Mundy, J. & Petersen, Morten, 2008, In: EMBO Journal. 27, 16, p. 2214-2221 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Age- and tactic-related paternity success in male African elephants
Rasmussen, H. B., Okello, J. B. A., Wittemyer, G., Siegismund, Hans Redlef, Arctander, P., Vollrath, F. & Douglas-Hamilton, I., 2008, In: Behavioral Ecology. 19, 1, p. 9-15Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A putative ABC transporter is involved in negative regulation of biofilm formation by Listeria monocytogenes.
Zhu, X., Long, F., Chen, Y., Knoechel, Susanne, She, Q. & Shi, X., 2008, In: Applied and Environmental Microbiology. 74, 24, p. 7675-7683Research output: Contribution to journal › Journal article › Research › peer-review
- Published
ACD 11: Programmed Cell Death, Sphingolipids and Plant Defense
Petersen, N. H. T., 2008, Department of Biology: Museum Tusculanum. 143 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Algorithms for Protein Structure Prediction
Paluszewski, M., 2008, København: Department of Computer Science, University of Copenhagen. 196 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
BayesMD: Flexible Biological Modeling for Motif Discovery
Tang, M. E., Krogh, Anders & Winther, Ole, 2008, In: Journal of Computational Biology. 15, 10, p. 1347-63 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cerebral dysautoregulation and the risk of ischemic events in occlusive carotid artery disease
Reinhard, M., Gerds, Thomas Alexander, Grabiak, D., Zimmermann, P. R., Roth, M., Guschlbauer, B., Timmer, J., Czosnyka, M., Weiller, C. & Hetzel, A., 2008, In: Journal of Neurology. 255, 8, p. 1182-1189 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterization and transcriptional analysis of two gene clusters for type IV secretion machinery in Wolbachia of Armadillidium vulgare
Félix, C., Pichon, S., Braquart-Varnier, C., Braig, H., Chen, L., Garrett, Roger Antony, Martin, G. & Grève, P., 2008, In: Research in Microbiology. 159, 6, p. 481-5 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Coimmunoprecipitation (co-IP) of Nuclear Proteins and Chromatin Immunoprecipitation (ChIP) from Arabidopsis.
Petersen, Morten, 2008, In: CSH protocols.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Compensatory role for Rad52 during recombinational repair in Ustilago maydis.
Kojic, M., Mao, N., Zhou, Q., Lisby, Michael & Holloman, W. K., 2008, In: Molecular Microbiology. 67, 5, p. 1156-68 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Competing to destroy: a fight between two RNA-degradation systems
Thon, Genevieve, 2008, In: Nature Structural and Molecular Biology. 15, 10, p. 1001-2 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Conserved CPEs in the p53 3' untranslated region influence mRNA stability and protein synthesis
Rosenstierne, M. W., Vinther, Jeppe, Mittler, G., Larsen, L., Mann, M. & Norrild, B., 2008, In: Anticancer Research. 28, 5A, p. 2553-9 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Crenarchaeal Viruses: Morphotypes and Genomes,
Prangishvili, P., Basta, P. & Garrett, Roger Antony, 2008, Encyclopedia of Virology (Third Edition). Mahy, B. W. J. & van Regenmortel, M. H. V. (eds.). Elsevier, Vol. 3rd ed.. p. 587-595Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
- Published
Differential regulation of the cellular response to DNA double-strand breaks in G1.
Barlow, J. H., Lisby, Michael & Rothstein, R., 2008, In: Molecular Cell. 30, 1, p. 73-85 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Downstream targets of WRKY33
Petersen, K., Fiil, Berthe Katrine, Mundy, J. & Petersen, Morten, 2008, In: Plant Signalling & Behavior. 3, 11, p. 1033-1034Research output: Contribution to journal › Journal article › Research › peer-review
- Published
EGFR induces expression of IRF-1 via STAT1 and STAT3 activation leading to growth arrest of human cancer cells
Andersen, P., Pedersen, M. W., Woetmann, Anders , Villingshøj, M., Stockhausen, M., Ødum, Niels & Poulsen, H. S., 2008, In: International Journal of Cancer. 122, 2, p. 342-9 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effective population size dynamics reveal impacts of historic climatic events and recent anthropogenic pressure in African elephants
Okello, J. B. A., Wittemyer, G., Rasmussen, H. B., Arctander, P., Nyakaana, S., Douglas-Hamilton, I. & Siegismund, Hans Redlef, 2008, In: Molecular Ecology. 17, 17, p. 3788-3799 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evidence for the horizontal transfer of an integrase gene from a fusellovirus to a pRN-like plasmid within a single strain of Sulfolobus and the implications for plasmid survival
Peng, Xu, 2008, In: Microbiology. 154, Pt 2, p. 383-91 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Receptor-like kinase complexes in plant innate immunity
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MAP kinase cascades in Arabidopsis innate immunity
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relax: the analysis of biomolecular kinetics and thermodynamics using NMR relaxation dispersion data
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