Functional Genomics

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  1. Published

    Adenosine triphosphatases of thermophilic archaeal double-stranded DNA viruses

    Happonen, L. J., Erdmann, S., Garrett, Roger Antony & Butcher, S. J., 2014, In: Cell & Bioscience. 4, 37, p. 37-52 16 p.

    Research output: Contribution to journal › Review › Research › peer-review

  2. Published

    Adenylylation of gyrase and topo IV by FicT toxins disrupts bacterial DNA topology

    Harms, A., Stanger, F. V., Scheu, P. D., de Jong, I. G., Goepfert, A., Glatter, T., Gerdes, K., Schirmer, T. & Dehio, C., 2015, In: Cell Reports. 12, 9, p. 1497-1507 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Adipokinetic hormones and their G protein-coupled receptors emerged in Lophotrochozoa

    Li, S., Hauser, Frank, Skadborg, S. K., Nielsen, S. V., Kirketerp-Møller, N. & Grimmelikhuijzen, Cornelis (Cok), 2016, In: Scientific Reports. 6, 13 p., 32789.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Alarmone (p)ppGpp regulates the transition from pathogenicity to mutualism in Photorhabdus luminescens

    Skjerning, R. B., Roghanian, Mohammad, Gerdes, K. & Clarke, D. J., 2016, In: Molecular Microbiology. 100, 4, p. 735-747 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Alcoholysis and strand joining by the Flp site-specific recombinase: Mechanistically equivalent reactions mediated by distinct catalytic configurations

    Knudsen, B. R., Lee, J., Lisby, Michael, Westergaard, O. & Jayaram, M., 21 Aug 1998, In: Journal of Biological Chemistry. 273, 34, p. 22028-22036 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Algae Genome Studies Reveal the Evolutionary History of Green Plants

    Wang, S., 2021, Department of Biology, Faculty of Science, University of Copenhagen. 134 p.

    Research output: Book/Report › Ph.D. thesis › Research

  7. Published

    Algorithms for Protein Structure Prediction

    Paluszewski, M., 2008, København: Department of Computer Science, University of Copenhagen. 196 p.

    Research output: Book/Report › Ph.D. thesis › Research

  8. Published

    Allosteric regulation of Csx1, a type IIIB-associated CARF domain ribonuclease by RNAs carrying a tetraadenylate tail

    Han, W., Pan, S., López-Méndez, B., Montoya, Guillermo & She, Q., 13 Oct 2017, In: Nucleic Acids Research. 45, 18, p. 10740-10750 11 p., gkx726.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    An Arabidopsis callose synthase.

    Ostergaard, L., Petersen, Morten, Mattsson, O. & Mundy, J., 2002, In: Plant Molecular Biology. 49, 6, p. 559-566 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    An IPTG-inducible derivative of the fission yeast nmt promoter

    Kjærulff, S. & Nielsen, Olaf, 2015, In: Yeast. 32, p. 469-478 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    An Orc1/Cdc6 ortholog functions as a key regulator in the DNA damage response in Archaea

    Sun, M., Feng, X., Liu, Z., Han, W., Liang, Y. X. & She, Q., 2018, In: Nucleic Acids Research. 46, 13, p. 6697-6711

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    An RNA gene expressed during cortical development evolved rapidly in humans.

    Pollard, K. S., Salama, S. R., Lambert, N., Lambot, M., Coppens, S., Pedersen, Jakob Skou, Katzman, S., King, B., Onodera, C., Siepel, A., Kern, A. D., Dehay, C., Igel, H., Ares, M., Vanderhaeghen, P. & Haussler, D., 2006, In: Nature. 443, 7108, p. 167-72 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    An amphipathic undecapeptide with all D-amino acids shows promising activity against colistin-resistant strains of Acinetobacter baumannii and a dual mode of action

    Oddo, A., Thomsen, T. T., Kjelstrup, S., Gorey, C., Franzyk, Henrik, Frimodt-Møller, N., Løbner-Olesen, Anders & Hansen, Paul Robert, 2016, In: Antimicrobial Agents and Chemotherapy. 60, 1, p. 592-599 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    An archaeal CRISPR type III-B system exhibiting distinctive RNA targeting features and mediating dual RNA and DNA interference

    Peng, W., Feng, M., Feng, X., Liang, Y. X. & She, Q., 2015, In: Nucleic Acids Research. 43, 1, p. 406-417 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    An archaeal protein evolutionarily conserved in prokaryotes is a zinc-dependent metalloprotease

    Hu, Y., Peng, N., Han, W., Mei, Y., Chen, Z., Feng, X., Liang, Y. X. & She, Q., 2012, In: Bioscience Reports. 32, p. 609-618 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    An efficient pipeline for ancient DNA mapping and recovery of endogenous ancient DNA from whole-genome sequencing data

    Xu, W., Lin, Y., Zhao, K., Li, H., Tian, Y., Ngatia, J. N., Ma, Y., Sahu, S. K., Guo, H., Guo, X., Xu, Y. C., Liu, Huan, Kristiansen, Karsten, Lan, T. & Zhou, X., 2021, In: Ecology and Evolution. 11, 1, p. 390-401 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    An evolutionary model for protein-coding regions with conserved RNA structure.

    Pedersen, Jakob Skou, Forsberg, R., Meyer, I. M. & Hein, J., 2004, In: Molecular Biology and Evolution. 21, 10, p. 1913-22 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    An exceptional case of historical outbreeding in African sable antelope populations

    Pitra, C., Hansen, Anders Johannes, Lieckfeldt, D. & Arctander, P., 2002, In: Molecular Ecology. 11, 7, p. 1197-208

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    An improved PCR method for endogenous DNA retrieval in contaminated Neandertal samples based on the usage of blocking primers

    Gigli, E., Rasmussen, M., Civit, S., Rosas, A., de la Rasilla, M., Fortea, J., Gilbert, M Thomas P, Willerslev, Eske & Lalueza-Fox, C., 2009, In: Journal of Archaeological Science. 36, p. 2676-2679

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    An improved direct metamobilome approach increases the detection of larger-sized circular elements across kingdoms

    Alanin, K. W. S., Jørgensen, T. S., Browne, Patrick Denis, Petersen, Bent, Riber, Leise, Kot, Witold & Hansen, Lars Hestbjerg, 2021, In: Plasmid. 115, 11 p., 102576.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    An innate immunity pathway in the moss Physcomitrella patens

    Bressendorff, Simon, Azevedo da Silva, R., Kenchappa, C. S., Ponce de León, I., Olsen, J. V., Rasmussen, M. W., Erbs, G., Newman, Mari-Anne, Petersen, Morten & Mundy, J., 2016, In: The Plant Cell. 28, 6, p. 1328-1342 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    An intriguing relationship between the cyclic diguanylate signaling system and horizontal gene transfer

    Madsen, Jonas Stenløkke, Hylling, Ole, Jacquiod, S. J. A., Pécastaings, S., Hansen, L. H., Riber, Leise, Vestergaard, G. A. & Sørensen, Søren Johannes, 2018, In: ISME Journal. 12, 9, p. 2330-2334 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    An updated evolutionary classification of CRISPR-Cas systems

    Makarova, K. S., Wolf, Y. I., Alkhnbashi, O. S., Costa, F., Shah, S. A., Saunders, S. J., Barrangou, R., Brouns, S. J. J., Charpentier, E., Haft, D. H., Horvath, P., Moineau, S., Mojica, F. J. M., Terns, R. M., Terns, M. P., White, M. F., Yakunin, A. F., Garrett, R. A., van der Oost, J., Backofen, R. & 1 others, Koonin, E. V., 2015, In: Nature Reviews. Microbiology. 13, 11, p. 722-736 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    An upstream activation element exerting differential transcriptional activation on an archaeal promoter

    Peng, N., Xia, Q., Chen, Z., Liang, Y. X. & She, Q., 2009, In: Molecular Microbiology. 74, 4, p. 928-939

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Analogues of a Cyclic Antimicrobial Peptide with a Flexible Linker Show Promising Activity Against Pseudomonas aeruginosa and Staphylococcus aureus

    Thomsen, T. T., Mendel, H. C., Al-Mansour, W., Oddo, A., Løbner-Olesen, Anders & Hansen, Paul Robert, 2020, In: Antibiotics. 9, 7, 13 p., 366.

    Research output: Contribution to journal › Journal article › Research › peer-review

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