Functional Genomics

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  1. Published

    rhvervseventyr for life science og biotek i fare på grund af underfinansiering af universiteterne: To professorer fra Københavns Universitet opfordrer til, at den nye erhvervsstrategi for life science og biotek følges op af en strategi for offentlig forskning og uddannelse.

    Kroer, Niels & Lisby, Michael, May 2021, In: MedWatch.

    Research output: Contribution to journal › Contribution to newspaper - Feature article › Communication

  2. Published

    relax: the analysis of biomolecular kinetics and thermodynamics using NMR relaxation dispersion data

    Morin, S., Linnet, T. E., Lescanne, M., Schanda, P., Thompson, G. S., Tollinger, M., Teilum, Kaare, Gagne, S., Marion, D., Griesinger, C., Blackledge, M. & d’Auvergne, E. J., 2014, In: Bioinformatics. 30, 15, p. 2219-2220 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    miRMaid: a unified programming interface for microRNA data resources

    Jacobsen, A., Krogh, Anders, Kauppinen, S. & Lindow, M., 2010, In: BMC Bioinformatics. 11, Suppl 1, p. 29

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    mRNA Decapping Factors LSM1 and PAT Paralogs Are Involved in Turnip Mosaic Virus Viral Infection

    Zuo, Zhangli Thomsen, Roux, M., Rodriguez, Eleazar & Petersen, Morten, 2022, In: Molecular plant-microbe interactions : MPMI. 35, 2, p. 125-130 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    cAMP competitively inhibits periplasmic phosphatases to coordinate nutritional growth with competence of Haemophilus influenzae

    Kronborg, Kristina & Zhang, Yong, 2023, In: Journal of Biological Chemistry. 299, 12, 13 p., 105404.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    [Pregnancy within the uterine scar of a prior Caesarean section].

    Hartwell, D., Hoffmann, Eva, Krebs, Lone, Langhoff-Roos, J. & Petersen, K., Aug 2010, In: Ugeskrift for Laeger.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    ZGRF1 Contributes to DNA Repair, Secondary DNA Structure Regulation, and Transcriptional Alteration

    Simonsen, Anne Katrine Wrist, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 153 p.

    Research output: Book/Report › Ph.D. thesis › Research

  8. Published

    Yeast transcriptional regulator Leu3p: Self-masking, specificity of masking, and evidence for regulation by the intracellular level of Leu3p

    Wang, D., Zheng, F., Holmberg, Steen & Kohlhaw, G. B., 1999, In: The Journal of Biological Chemistry. 274 (27), p. 19017-19024

    Research output: Contribution to journal › Journal article › Research

  9. Published

    Where sociality and relatedness diverge: the genetic basis for hierarchical social organization in African elephants

    Wittemyer, G., Okello, J. B. A., Rasmussen, H. B., Arctander, P., Nyakaana, S., Douglas-Hamilton, I. & Siegismund, Hans Redlef, 2009, In: PROCEEDINGS OF THE ROYAL SOCIETY OF LONDON SERIES B-CONTAINING PAPERS OF A BIOLOGICAL CHARACTER. 276, 1672, p. 3513-3521

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Where is the field of autophagy research heading?

    Abeliovich, H., Debnath, J., Ding, W. X., Jackson, W. T., Kim, D. H., Klionsky, D. J., Ktistakis, N., Margeta, M., Münz, C., Petersen, Morten, Sadoshima, J. & Vergne, I., 2023, In: Autophagy. 19, 4, 6 p.

    Research output: Contribution to journal › Editorial › Research

  11. Published

    WAR: webserver for aligning structural RNAs

    Þórarinsson, E. & Lindgreen, S., 2008, In: Nucleic Acids Research. 36, Suppl. 2, p. W79-W84 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Volume of Hsp90 ligand binding and the unfolding phase diagram as a function of pressure and temperature

    Petrauskas, V., Gylyte, J., Toleikis, Z., Cimmperman, P. & Matulis, D., 2013, In: European Biophysics Journal. 42, 5, p. 355-362 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Viruses of the Archaea: a unifying view

    Prangishvili, D., Forterre, P. & Garrett, Roger Antony, 1 Nov 2006, In: Nature Reviews. Microbiology. 4, 11, p. 837-48 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Viruses of the Archaea

    Prangishvili, D., Basta, T., Garrett, Roger Antony & Krupovic, M., 2016, In: eLS. 9 p.

    Research output: Contribution to journal › Review › Research › peer-review

  15. Published

    Viruses of the Archaea

    Basta, T., Garrett, Roger Antony & Prangishvili, D., 2009, Encyclopedia of Life Sciences. Wiley, p. 1-8

    Research output: Chapter in Book/Report/Conference proceeding › Encyclopedia chapter › Research

  16. Published

    Viruses in acidic geothermal environments of the Kamchatka Peninsula

    Bize, A., Peng, Xu, Prokofeva, M., Maclellan, K., Lucas, S., Forterre, P., Garrett, Roger Antony, Bonch-Osmolovskaya, E. A. & Prangishvili, D., 2008, In: Research in Microbiology. 159, 5, p. 358-66 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Virulence, Resistance, and Genomic Fingerprint Traits of Vibrio cholerae Isolated from 12 Species of Aquatic Products in Shanghai, China

    Fu, H., Yu, P., Liang, W., Kan, B., Peng, Xu & Chen, L., 2020, In: Microbial Drug Resistance. 26, 12, p. 1526-1539 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Virology: Independent virus development outside a host

    Häring, M., Vestergaard, G. A., Rachel, R., Chen, L., Garrett, Roger Antony & Prangishvili, D., 2005, In: Nature. 436, 7054, p. 1101-1102

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Vesicles in electric fields: some novel aspects of membrane behavior

    Dimova, R., Bezlyepkina, N. & Domange Jordö, M. E., 2009, In: Soft Matter. 5, 17, p. 3201-3212 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    VapCs of Mycobacterium tuberculosis cleave RNAs essential for translation

    Winther, K. S., Tree, J. J., Tollervey, D. & Gerdes, K., 2016, In: Nucleic Acids Research. 44, 20, p. 9860-9871 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Valine-Induced Isoleucine Starvation in Escherichia coli K-12 Studied by Spike-In Normalized RNA Sequencing

    Gummesson, Bertil, Shah, S. A., Borum, A. S., Fessler, M., Mitarai, Namiko, Sørensen, Michael Askvad & Svenningsen, Sine Lo, 2020, In: Frontiers in Genetics. 11, 17 p., 144.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Using transcriptomics to identify and validate novel biomarkers of human skeletal muscle cancer cachexia

    Stephens, N. A., Gallagher, I. J., Rooyackers, O., Skipworth, R. J., Tan, B. H., Marstrand, T. T., Ross, J. A., Guttridge, D. C., Lundell, L., Fearon, K. C. & Timmons, J. A., 2010, In: Genome Medicine. 2, 12 p., 1.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Using an alignment of fragment strings for comparing protein structures.

    Friedberg, I., Harder, T., Kolodny, R., Sitbon, E., Li, Z. & Godzik, A., 2007, In: Bioinformatics. 23, 2, p. e219-24

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Uropathogenic Escherichia coli metabolite-dependent quiescence and persistence may explain antibiotic tolerance during urinary tract infection

    Leatham-Jensen, M. P., Mokszycki, M. E., Rowley, D. C., Deering, R., Camberg, J. L., Sokurenko, E. V., Tchesnokova, V. L., Frimodt-Møller, Jakob, Krogfelt, K. A., Nielsen, K. L., Frimodt-Møller, N., Sun, G. & Cohen, P. S., 2016, In: mSphere. 1, 1, 22 p., e00055-15.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Upregulated baseline plasma CCL19 and CCR7 cell-surface expression on monocytes in early rheumatoid arthritis normalized during treatment and CCL19 correlated with radiographic progression

    Ellingsen, T., Hansen, I., Thorsen, J., Møller, B. K., Tarp, U., Lottenburger, T., Andersen, L. S., Skjødt, H., Pedersen, J. K., Lauridsen, U. B., Svendsen, A., Lindegaard, H., Jacobsen, S., Østergaard, M., Vestergaard, A., Jurik, A. G., Junker, P., Christensen, A. F., Hetland, M. L., Hørslev-Petersen, K. & 1 others, Stengaard-Pedersen, K., 2014, In: Scandinavian Journal of Rheumatology. 43, 2, p. 91-100 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Update on non-typeable Haemophilus influenzae-mediated disease and vaccine development

    Jalalvand, F. & Riesbeck, K., 3 Jun 2018, In: Expert Review of Vaccines. 17, 6, p. 503-512

    Research output: Contribution to journal › Review › Research › peer-review

  27. Published

    Unveiling cell surface and type IV secretion proteins responsible for archaeal rudivirus entry

    Deng, Ling, He, F., Bhoobalan, Yuvaraj, Martinez Alvarez, Laura, Guo, Y. & Peng, Xu, 2014, In: Journal of Virology. 88, 17, p. 10264-10268 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Unravelling the role of the F55 regulator in the transition from lysogeny to UV induction of sulfolobus spindle-shaped virus 1

    Fusco, S., She, Q., Fiorentino, G., Bartolucci, S. & Contursi, P., 2015, In: Journal of Virology. 89, 12, p. 6453-6461 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Unmarked gene deletion and host-vector system for the hyperthermophilic crenarchaeon Sulfolobus islandicus

    Deng, L., Zhu, H., Chen, Z., Liang, Y. X. & She, Q., 2009, In: Extremophiles. 13, 4, p. 735-46 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Uncovering the roots of paranoid suicidal plants

    Lolle, S., 2017, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  31. Published

    UBL/BAG-domain co-chaperones cause cellular stress upon overexpression through constitutive activation of Hsf1

    Poulsen, E. G., Kampmeyer, Caroline, Kriegenburg, F., Johansen, Jens Vilstrup, Hofmann, K., Holmberg, Christian & Hartmann-Petersen, Rasmus, Jan 2017, In: Cell Stress & Chaperones. 22, 1, p. 143-154 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Type IV CRISPR-Cas systems are highly diverse and involved in competition between plasmids

    Pinilla Redondo, Rafael, Mayo-Muñoz, D., Russel, J., Garrett, Roger Antony, Randau, L., Sørensen, Søren Johannes & Shah, S. A., 2020, In: Nucleic Acids Research. 48, 4, p. 2000-2012 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Type III CRISPR/Cas system: introduction and its application for genetic manipulations

    Liu, T., Pan, S., Li, Y., Peng, N. & She, Q., 2017, The CRISPR/Cas system: emerging technology and application. Jamal, M. (ed.). Caister Academic Press, p. 1-13 13 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  34. Published

    Type III CRISPR-Cas System: Introduction And Its Application for Genetic Manipulations

    Liu, T., Pan, S., Li, Y., Peng, N. & She, Q., 1 Jan 2018, In: Current Issues in Molecular Biology. 26, p. 1-14 14 p.

    Research output: Contribution to journal › Review › Research › peer-review

  35. Published

    Type II and type IV toxin-antitoxin systems show different evolutionary patterns in the global Klebsiella pneumoniae population

    Horesh, G., Fino, C., Harms, A., Dorman, M. J., Parts, L., Gerdes, K., Heinz, E. & Thomson, N. R., 2020, In: Nucleic Acids Research. 48, 8, p. 4357-4370 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Two-step activation of meiosis by the mat1 locus in Schizosaccharomyces pombe

    Willer, M., Hoffmann, U., Styrkársdóttir, U., Egel, Richard, Davey, W. J., Nielsen, O. & Nielsen, Olaf, 1 Sep 1995, In: Molecular and Cellular Biology. 15, 9, p. 4964-70 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Two portable recombination enhancers direct donor choice in fission yeast heterochromatin

    Jakociunas, T., Holm, L. R., Hansen, J. V., Trusina, Ala & Thon, Genevieve, 2013, In: P L o S Genetics. 9, 10, 14 p., e1003762.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Two differentially regulated Arabidopsis genes define a new branch of the DFR superfamily.

    Østergaard, L., Lauvergeat, V., Naested, H., Mattsson, O. & Mundy, J., 2001, In: Plant Science. 160, 3, p. 463-472 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Two conserved modules of Schizosaccharomyces pombe Mediator regulate distinct cellular pathways

    Linder, T., Rasmussen, N., Samuelsen, C. O., Chatzidaki, E., Baraznenok, V., Beve, J., Henriksen, P., Gustafsson, C. M. & Holmberg, Steen, 2008, In: Nucleic Acids Research. 36, 8, p. 2489-504 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Trypanosome variable surface glycoproteins: composite genes and order of expression

    Thon, Genevieve, Baltz, T., Giroud, C. & Eisen, H., 1990, In: Genes & Development. 4, 8, p. 1374-1383 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Truncated glucagon-like peptide I, an insulin-releasing hormone from the distal gut

    Holst, Jens Juul, Ørskov, Cathrine, Nielsen, Olaf & Schwartz, Thue W., 1987, In: F E B S Letters. 211, 2, p. 169-74 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Transposon tagging and gene targeting in Lotus japonicus

    Handberg, K., Thykjaer, T., Stiller, J., She, Q. & Stougaard, J., 1993, Current Plant Science and Biotechnology in Agriculture; New horizons in nitrogen fixation (R. Palacios, J. Mora W. E. Newton eds). p. 342 1 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  43. Published

    Translocation of non-lytic antimicrobial peptides and bacteria penetrating peptides across the inner membrane of the bacterial envelope

    Frimodt-Møller, Jakob, Campion, C., Nielsen, Peter E. & Løbner-Olesen, Anders, 2022, In: Current Genetics. 68, 1, p. 83-90

    Research output: Contribution to journal › Review › Research › peer-review

  44. Published

    Transcriptomic analysis of the SSV2 infection of Sulfolobus solfataricus with and without the integrative plasmid pSSVi

    Ren, Y., She, Q. & Huang, L., 2013, In: Virology. 441, 2, p. 126-134 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Transcriptomes of the desiccation-tolerant resurrection plant Craterostigma plantagineum

    Suarez Rodriguez, M. C., Edsgärd, D., Hussain, S. S., Alquezar Planas, D. E., Rasmussen, M., Gilbert, M Thomas P, Nielsen, B. H., Bartels, D. & Mundy, J., Jul 2010, In: The Plant Journal. 63, 2, p. 212-228 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Transcriptome-Wide Analysis of Protein-RNA and RNA-RNA Interactions in Pathogenic Bacteria

    Tree, J. J., Gerdes, K. & Tollervey, D., 2018, High-Density Sequencing Applications in Microbial Molecular Genetics. Carpousis, A. J. (ed.). Academic Press, Vol. 612. p. 467-488 (Methods in Enzymology).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  47. Published

    Transcriptome responses to combinations of stresses in Arabidopsis

    Rasmussen, S., Barah, P., Suarez Rodriguez, M. C., Bressendorff, Simon, Friis, P., Costantino, P., Bones, A. M., Nielsen, H. B. & Mundy, J., 2013, In: Plant Physiology. 161, 4, p. 1783-1794 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Transcriptome changes in STSV2-infected Sulfolobus islandicus REY15A undergoing continuous CRISPR spacer acquisition

    León Sobrino, C., Kot, W. P. & Garrett, Roger Antony, 2016, In: Molecular Microbiology. 99, 4, p. 719-728 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Transcriptome and genome size analysis of the venus flytrap

    Jensen, M. K., Vogt, J. K., Bressendorff, Simon, Seguin-Orlando, A., Petersen, Morten, Sicheritz-Pontén, T. & Mundy, J., 2015, In: P L o S One. 10, 4, 13 p., e0123887.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Transcriptome analysis of Sulfolobus solfataricus infected with two related fuselloviruses reveals novel insights into the regulation of CRISPR-Cas system

    Fusco, S., Liguori, R., Limauro, D., Bartolucci, S., She, Q. & Contursi, P., 2015, In: Biochimie. 118, p. 322-332 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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