Functional Genomics

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  1. 2015
  2. Published

    Cell biology of mitotic recombination

    Lisby, Michael & Rothstein, R., 2015, In: Cold Spring Harbor Perspectives in Biology. 7, 3, 23 p., a016535.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Cell growth of wall-free L-form bacteria is limited by oxidative damage

    Kawai, Y., Mercier, R., Wu, L. J., Dominguez Cuevas, P., Oshima, T. & Errington, J., 2015, In: Current Biology. 25, 12, p. 1613-1618 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Cmr1/WDR76 defines a nuclear genotoxic stress body linking genome integrity and protein quality control

    Gallina, I., S.Colding-Christensen, Camilla, Henriksen, P., Beli, P., Nakamura, K., Offman, J., Barfred, D. P., Pinela da Silva, S. C., Hoffmann, E., Groth, Anja, Choudhary, C. & Lisby, Michael, 2015, In: Nature Communications. 6, 16 p., 6533.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Comparative metagenomics of eight geographically remote terrestrial hot springs

    Menzel, P., Islin, S. R., Rike, A. G., Lin, L., Zhang, Q., Contursi, P., Moracci, M., Kristjansson, J. K., Bolduc, B., Gavrilov, S., Ravin, N., Mardanov, A., Bonch-Osmolovskaya, E., Young, M., Krogh, Anders & Peng, Xu, 2015, In: Microbial Ecology. 70, 2, p. 411-424 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Compartment-specific aggregases direct distinct nuclear and cytoplasmic aggregate deposition

    Miller, S. B., Ho, C., Winkler, J., Khokhrina, M., Neuner, A., Mohamed, M. Y., Guilbride, D. L., Richter, K., Lisby, Michael, Schiebel, E., Mogk, A. & Bukau, B., 2015, In: E M B O Journal. 34, 6, p. 778-797 20 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Control regions for chromosome replication are conserved with respect to sequence and location among Escherichia coli strains

    Frimodt-Møller, Jakob, Charbon, Godefroid, Krogfelt, K. A. & Løbner-Olesen, Anders, 2015, In: Frontiers in Microbiology. 6, 15 p., 1011.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Crystallization of two operator complexes from the Vibrio cholerae HigBA2 toxin-antitoxin module

    Hadzi, S., Garcia-Pino, A., Gerdes, K., Lah, J. & Loris, R., 2015, In: Acta Crystallographica. Section F: Structural Biology and Crystallization Communications Online. 71, 2, p. 226-233 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Discovery and characterization of thermophilic limonene-1,2-epoxide hydrolases from hot spring metagenomic libraries

    Ferrandi, E. E., Sayer, C., Isupov, M. N., Annovazzi, C., Marchesi, C., Iacobone, G., Peng, Xu, Bonch-Osmolovskaya, E., Wohlgemuth, R., Littlechild, J. A. & Monti, D., 2015, In: F E B S Journal. 282, 15, p. 2879-2894 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Dynamics and stabilization of the human gut microbiome during the first year of life

    Bäckhed, G. F., Roswall, J., Peng, Y., Feng, Q., Jia, H., Kovatcheva-Datchary, P., Li, Y., Xia, Y., Xie, H., Zhong, H., Khan, M. T., Zhang, J., Li, J., Xiao, L., Al-Aama, J., Zhang, D., Lee, Y. S., Kotowska, D. E., Colding, C. S., Tremaroli, V. & 7 others, Yin, Y., Bergman, S., Xu, X., Madsen, L., Kristiansen, Karsten, Dahlgren, J. & Wang, J., 2015, In: Cell Host & Microbe. 17, 5, p. 690-703 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Efficient 5 '-3 ' DNA end resection by HerA and NurA is essential for cell viability in the crenarchaeon Sulfolobus islandicus

    Huang, Q., Liu, L., Liu, J., Ni, J., She, Q. & Shen, Y., 2015, In: B M C Molecular Biology. 16, 14 p., 2.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Functional characterization of a conserved archaeal viral operon revealing single-stranded DNA binding, annealing and nuclease activities

    Guo, Y., Kragelund, Birthe Brandt, White, M. F. & Peng, Xu, 2015, In: Journal of Molecular Biology. 427, 12, p. 2179-2191 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Genetic Studies on CRISPR-Cas Functions in Invader Defense in Sulfolobus islandicus

    Peng, W., 2015, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  14. Published

    Genetic analysis of the Holliday junction resolvases Hje and Hjc in Sulfolobus islandicus

    Huang, Q., Li, Y., Zeng, C., Song, T., Yan, Z., Ni, J., She, Q. & Shen, Y., 2015, In: Extremophiles. 19, 2, p. 505-514 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Genomic context drives transcription of insertion sequences in the bacterial endosymbiont Wolbachia wVulC

    Cerveau, N., Gilbert, C., Liu, C., Garrett, Roger Antony, Greve, P., Bouchon, D. & Cordaux, R., 2015, In: Gene. 564, 1, p. 81-86 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Heterologous expression of mannanase and developing a new Reporter gene system in Lactobacillus casei and Escherichia coli

    Lin, J., Zou, Y., Ma, C., She, Q., Liang, Y., Chen, Z. & Ge, X., 2015, In: PLOS ONE. 10, 11, 16 p., e0142886.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Hyperthermophilic Archaeal Viruses as Novel Nanoplatforms

    Uldahl, K. B., 2015, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  18. Published

    Identification and Investigation of Native Chromosomal Fragile Sites in the Avian Cell Line DT40: Chromosomal Fragile Sites and Genome Integrity

    Pentzold, C., 2015, Department of Biology, Faculty of Science, University of Copenhagen. 150 p.

    Research output: Book/Report › Ph.D. thesis › Research

  19. Published

    Initiation of Replication in Escherichia coli: A Comprehensive Study in Regulation of Initiation and the Interlink to Chromosomal Organization

    Frimodt-Møller, Jakob, 2015, Department of Biology, Faculty of Science, University of Copenhagen. 205 p.

    Research output: Book/Report › Ph.D. thesis › Research

  20. Published

    MAP Kinase 4 Substrates and Plant Innate Immunity

    Rasmussen, M. W., 2015, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  21. Published

    Recombinational DNA repair is regulated by compartmentalization of DNA lesions at the nuclear pore complex

    Géli, V. & Lisby, Michael, 2015, In: BioEssays. 37, 12, p. 1287-1292 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Regulation of the Anti-Viral Immune System CRISPR in Sulfolobus and Development of a Genetic Tool for the Linear Sulfolobus Rudivirus SIRV2

    He, F., 2015, Department of Biology, Faculty of Science, University of Copenhagen. 101 p.

    Research output: Book/Report › Ph.D. thesis › Research

  23. Published

    Retromer contributes to immunity-associated cell death in Arabidopsis

    Munch, D., Teh, O., Malinovsky, F. G., Liu, Q., Vetukuri, R. R., El Kasmi, F., Brodersen, Peter, Hara-Nishimura, I., Dangl, J. L., Petersen, Morten, Mundy, J. & Hofius, D., 2015, In: Plant Cell. 27, 2, p. 463-479 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    STSV2 as a Model Crenarchaeal Virus for Studying Virus-Host Interactions and CRISPR-Cas Adaptive Immunity

    León Sobrino, C., 2015, Department of Biology, Faculty of Science, University of Copenhagen. 159 p.

    Research output: Book/Report › Ph.D. thesis › Research

  25. Published

    Single site suppressors of a fission yeast temperature-sensitive mutant in cdc48 identified by whole genome sequencing

    Marinova, I. N., Engelbrecht, J., Ewald, A., Langholm, L. L., Holmberg, Christian, Kragelund, Birthe Brandt, Gordon, C., Nielsen, Olaf & Hartmann-Petersen, Rasmus, 2015, In: P L o S One. 10, 2, 15 p., e0117779.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Srs2 promotes Mus81-Mms4-mediated resolution of recombination intermediates

    Chavdarova, M., Marini, V., Sisakova, A., Sedlackova, H., Vigasova, D., Brill, S. J., Lisby, Michael & Krejci, L., 2015, In: Nucleic Acids Research. 43, 7, p. 3626-3642 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Studies on DNA Damage Response in Sulfolobus islandicus

    Han, W., 2015, Department of Biology, Faculty of Science, University of Copenhagen. 139 p.

    Research output: Book/Report › Ph.D. thesis › Research

  28. Published

    Studying Extrachromosomal Genetic Elements in Sulfolobus

    Guannan, L., 2015, Department of Biology, Faculty of Science, University of Copenhagen. 85 p.

    Research output: Book/Report › Ph.D. thesis › Research

  29. Published

    Suppressors of Hyperinitiation in Escherichia coli Couple DNA Replication to Precursor Biosynthesis and Energy Metabolism

    Bjørn, L., 2015, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  30. Published

    Targeting of SUMO substrates to a Cdc48-Ufd1-Npl4 segregase and STUbL pathway in fission yeast

    Køhler, J. B., Tammsalu, T., Jørgensen, M. L. M., Steen, N., Hay, R. T. & Thon, Genevieve, 2015, In: Nature Communications. 6, 14 p., 8827.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    The Functional Role of TopBP1 in DNA Maintenance at Mitosis

    Pedersen, R. T., 2015, Department of Biology, Faculty of Science, University of Copenhagen. 167 p.

    Research output: Book/Report › Ph.D. thesis › Research

  32. Published

    The mRNA decay factor PAT1 functions in a pathway including MAP kinase 4 and immune receptor SUMM2

    Roux, M. E., Rasmussen, M. W., Palma, K., Lolle, S., Regué, À. M., Bethke, G., Glazebrook, J., Zhang, W., Sieburth, L., Larsen, M. R., Mundy, J. & Petersen, Morten, 2015, In: E M B O Journal. 34, 5, p. 593-608 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    The pearl millet mitogen-activated protein kinase PgMPK4 is involved in responses to downy mildew infection and in jasmonic- and salicylic acid-mediated defense

    Melvin, P., Prabhu, S. A., Veena, M., Shailasree, S., Petersen, Morten, Mundy, J., Shetty, S. H. & Kini, K. R., 2015, In: Plant Molecular Biology. 87, 3, p. 287-302 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Top2 and Sgs1-Top3 act redundantly to ensure rDNA replication termination

    Mundbjerg, K., Jørgensen, S. W., Fredsøe, J. C., Nielsen, I., Pedersen, J. M., Bentsen, I. B., Lisby, Michael, Bjergbaek, L. & Andersen, A. H., 2015, In: P L o S Genetics. 11, 12, 24 p., e1005697.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    TopBP1 is required at mitosis to reduce transmission of DNA damage to G1 daughter cells

    Pedersen, R. T., Kruse, Thomas, Nilsson, Jakob, Østergaard, Vibe Hallundbæk & Lisby, Michael, 2015, In: Journal of Cell Biology. 210, 4, p. 565-582 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Transcriptome analysis of Sulfolobus solfataricus infected with two related fuselloviruses reveals novel insights into the regulation of CRISPR-Cas system

    Fusco, S., Liguori, R., Limauro, D., Bartolucci, S., She, Q. & Contursi, P., 2015, In: Biochimie. 118, p. 322-332 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Transcriptome and genome size analysis of the venus flytrap

    Jensen, M. K., Vogt, J. K., Bressendorff, Simon, Seguin-Orlando, A., Petersen, Morten, Sicheritz-Pontén, T. & Mundy, J., 2015, In: P L o S One. 10, 4, 13 p., e0123887.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Unravelling the role of the F55 regulator in the transition from lysogeny to UV induction of sulfolobus spindle-shaped virus 1

    Fusco, S., She, Q., Fiorentino, G., Bartolucci, S. & Contursi, P., 2015, In: Journal of Virology. 89, 12, p. 6453-6461 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. 2014
  40. Published

    Correction: The PCNA interaction protein box sequence in Rad54 is an integral part of its ATPase domain and is required for efficient DNA repair and recombination (PLoS ONE (2013) 8, 12 (e82630) DOI: 10.1371/journal.pone.0082630)

    Burgess, R. C., Sebesta, M., Sisakova, A., Marini, V. P. & Lisby, Michael, 24 Jun 2014, In: PLoS ONE. 9, 6, e101095.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  41. Published

    A backward view from 16S rRNA to archaea to the universal tree of life to progenotes Reminiscences of Carl Woese

    Garrett, Roger Antony, 2014, In: R N A Biology. 11, 3, p. 232-235 4 p.

    Research output: Contribution to journal › Review › Research › peer-review

  42. Published

    A novel single-tailed fusiform Sulfolobus virus STSV2 infecting model Sulfolobus species

    Erdmann, S., Chen, B., Huang, X., Deng, Ling, Liu, C., Shah, S. A., Bauer, S. L. M., León Sobrino, C., Wang, H., Wei, Y., She, Q., Garrett, Roger Antony, Huang, L. & Lin, L., 2014, In: Extremophiles. 18, 1, p. 51-60 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Adenosine triphosphatases of thermophilic archaeal double-stranded DNA viruses

    Happonen, L. J., Erdmann, S., Garrett, Roger Antony & Butcher, S. J., 2014, In: Cell & Bioscience. 4, 37, p. 37-52 16 p.

    Research output: Contribution to journal › Review › Research › peer-review

  44. Published

    Antibiotic selection of Escherichia coli sequence type 131 in a mouse intestinal colonization model

    Hertz, F. B., Løbner-Olesen, Anders & Frimodt-Møller, N., 2014, In: Antimicrobial Agents and Chemotherapy. 58, 10, p. 6139-6144 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Arabidopsis accelerated cell death 11, ACD11, is a ceramide-1-phosphate transfer protein and intermediary regulator of phytoceramide levels

    Simanshu, D. K., Zhai, X., Munch, D., Hofius, D., Markham, J. E., Bielawski, J., Bielawska, A., Malinina, L., Molotkovsky, J. G., Mundy, J. W., Patel, D. J. & Brown, R. E., 2014, In: Cell Reports. 6, 2, p. 388-399 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Aspects of ribonucleotide reductase regulation and genome stability: a study of human ribonucleotide reductase ssing fission yeast as a model

    Nielsen, H. B. N., 2014, Department of Biology, Faculty of Science, University of Copenhagen. 149 p.

    Research output: Book/Report › Ph.D. thesis › Research

  47. Published

    Autophagy and Retromer Components in Plant Innate Immunity

    Munch, D., 2014, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  48. Published

    Autophagy deficiency leads to accumulation of ubiquitinated proteins, ER stress, and cell death in Arabidopsis

    Munch, D., Rodriguez, E., Bressendorff, Simon, Park, O. K., Hofius, D. & Petersen, Morten, 2014, In: Autophagy. 10, 9, p. 1579-1587 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Bactericidal antibiotics increase hydroxyphenyl fluorescein signal by altering cell morphology

    Paulander, W., Wang, Y., Folkesson, A., Charbon, Godefroid, Løbner-Olesen, Anders & Ingmer, Hanne, 2014, In: P L o S One. 9, 3, 4 p., e92231.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    C/EBPα is dispensable for the ontogeny of PD-1+ CD4+ memory T cells but restricts their expansion in an age-dependent manner

    Norrie, I. C., Ohlsson, E., Nielsen, Olaf, Hasemann, M. S. & Porse, Bo Torben, 2014, In: P L o S One. 9, 1, p. 1-9 9 p., e84728.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    CRISPR adaptive immune systems of Archaea

    Vestergaard, G. A., Garrett, Roger Antony & Shah, S. A., 2014, In: R N A Biology. 11, 2, p. 157-168 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci

    Alkhnbashi, O. S., Costa, F., Shah, S. A., Garrett, Roger Antony, Saunders, S. J. & Backofen, R., 2014, In: Bioinformatics. 30, 17, p. i489-i496 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    Cell cycle regulation of homologous recombination in Saccharomyces cerevisiae

    Mathiasen, D. P. & Lisby, Michael, 2014, In: F E M S Microbiology Reviews. 38, 2, p. 172-184 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Characterization of pMC11, a plasmid with dual origins of replication isolated from Lactobacillus casei MCJ and construction of shuttle vectors with each replicon

    Chen, Z., Lin, J., Ma, C., Zhao, S., She, Q. & Liang, Y., 2014, In: Applied Microbiology and Biotechnology. 98, 13, p. 5977-5989 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    DNA Methylation

    Marinus, M. G. & Løbner-Olesen, Anders, 2014, Synthesis and Processing of Macromolecules. Lovett, S. T. (ed.). ASM Press, (EcoSal Plus: Domain 4).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  56. Published

    DNA secondary structures are associated with recombination in major Plasmodium falciparum variable surface antigen gene families

    Sander, Adam F. , Lavstsen, Thomas, Rask, T. S., Lisby, Michael, Salanti, Ali, Fordyce, S. L., Jespersen, Jakob Schmidt, Carter, R., Deitsch, K. W., Theander, Thor Grundtvig, Pedersen, A. G. & Arnot, D. E., 2014, In: Nucleic Acids Research. 42, 4, p. 2270-81 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    First experimental evidence for the presence of a CRISPR toxin in Sulfolobus

    He, F., Chen, L. & Peng, Xu, 2014, In: Journal of Molecular Biology. 426, 22, p. 3683-3688 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    Flavour Compounds in Fungi: Flavour Analysis in Ascomycetes and the Contribution of the Ehrlich Pathway to Flavour Production in Saccharomyces cerevisiae and Ashbya gossypii

    Ravasio, D. A., 2014, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  59. Published

    Genetic basis for Saccharomyces cerevisiae biofilm in liquid medium

    Andersen, K. S., Bojsen, R. K., Sørensen, L. G. R., Weiss Nielsen, M., Lisby, Michael, Folkesson, A. & Regenberg, Birgitte, 2014, In: G3: Genes, Genomes, Genetics (Bethesda). 4, 9, p. 1671-1680 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    Insights into Vibrio parahaemolyticus CHN25 response to artificial gastric fluid stress by transcriptomic analysis

    Sun, X., Liu, T., Peng, Xu & Chen, L., 2014, In: International Journal of Molecular Sciences (Online). 15, 12, p. 22539-22562 24 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    Inter-viral conflicts that exploit host CRISPR immune systems of Sulfolobus

    Erdmann, S., Le Moine Bauer, S. & Garrett, Roger Antony, 2014, In: Molecular Microbiology. 91, 5, p. 900-917 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    Interplays between Sumoylation, SUMO-Targeted Ubiquitin Ligases, and the Ubiquitin-Adaptor Protein Ufd1 in Fission Yeast

    Køhler, J. B., 2014, Department of Biology, Faculty of Science, University of Copenhagen. 194 p.

    Research output: Book/Report › Ph.D. thesis › Research

  63. Published

    Length-dependent processing of telomeres in the absence of telomerase

    Fallet, E., Jolivet, P., Soudet, J., Lisby, Michael, Gilson, E. & Teixeira, M. T., 2014, In: Nucleic Acids Research. 42, 6, p. 3648-3665 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    Mechanisms and regulation of mitotic recombination in Saccharomyces cerevisiae

    Symington, L. S., Rothstein, R. & Lisby, Michael, 2014, In: Genetics (Print). 198, 3, p. 795-835 41 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    Meiosis and SUMO

    Holm, L. R., 2014, Department of Biology, Faculty of Science, University of Copenhagen. 170 p.

    Research output: Book/Report › Ph.D. thesis › Research

  66. Published

    Metagenomic analyses reveal phylogenetic diversity of carboxypeptidase gene sequences in activated sludge of a wastewater treatment plant in Shanghai, China

    Jin, H., Li, B., Peng, Xu & Chen, L., 2014, In: Annals of Microbiology. 64, 2, p. 689-697 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    Molecular biology of fuselloviruses and their satellites

    Contursi, P., Fusco, S., Cannio, R. & She, Q., 2014, In: Extremophiles. 18, 3, p. 473-489 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    Nanobiomotors of archaeal DNA repair machineries: current research status and application potential

    Han, W., Shen, Y. & She, Q., 2014, In: Cell & Bioscience. 4, 32, 12 p.

    Research output: Contribution to journal › Review › Research › peer-review

  69. Published

    Origins and emergent evolution of life: the colloid microsphere hypothesis revisited

    Egel, Richard, 2014, In: Origins of Life and Evolution of Biospheres. 44, 2, p. 87-110 24 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    Oxidative DNA damage is instrumental in hyperreplication stress-induced inviability of Escherichia coli

    Charbon, Godefroid, Bjørn, L., Mendoza-Chamizo, B., Frimodt-Møller, Jakob & Løbner-Olesen, Anders, 2014, In: Nucleic Acids Research. 42, 21, p. 13228-13241 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    Regulation of Homologous Recombination by SUMOylation: SUMO, DNA Repair and New Insights into Telomere Maintenance

    Pinela da Silva, S. C., 2014, Department of Biology, Faculty of Science, University of Copenhagen. 211 p.

    Research output: Book/Report › Ph.D. thesis › Research

  72. Published

    Spd2 assists Spd1 in the modulation of ribonucleotide reductase architecture but does not regulate deoxynucleotide pools

    Vejrup-Hansen, R., Fleck, O., Landvad, K., Fahnøe, Ulrik, Broendum, S. S., Schreurs, A., Kragelund, Birthe Brandt, Carr, A. M., Holmberg, Christian & Nielsen, Olaf, 2014, In: Journal of Cell Science. 127, p. 2460-2470 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Structure of Leptin Receptor Related with Obesity

    Toleikis, Z., 2014, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  74. Published

    Sulfolobus Replication Factor C stimulates the activity of DNA Polymerase B1

    Xing, X., Zhang, L., Guo, L., She, Q. & Huang, L., 2014, In: Journal of Bacteriology. 196, 13, p. 2367-2375 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    Suppressing autoimmunity in Arabidopsis thaliana with dominant negative immune receptors

    Greeff, M. C., 2014, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  76. Published

    The Role of the CRL4Cdt2 Target Spd1 in Chromosome Segregation in Fission Yeast

    Landvad, K., 2014, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  77. Published

    The genetic and biochemical basis of FANCD2 Monoubiquitination

    Rajendra, E., Østergaard, Vibe Hallundbæk, Langevin, F., Wang, M., Dornan, G. L., Patel, K. J. & Passmore, L. A., 2014, In: Molecular Cell. 54, 5, p. 858-869 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    The haloarchaeal MCM proteins: bioinformatic analysis and targeted mutagenesis of the β7-β8 and β9-β10 hairpin loops and conserved zinc binding domain cysteines

    Kristensen, T. P., Cherian, R. M., Gray, F. C. & Macneill, S. A., 2014, In: Frontiers in Microbiology. 5, 13 p., 123.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    The influence of pressure on the intrinsic dissolution rate of amorphous indomethacin

    Löbmann, Korbinian, Flouda, K., Qiu, D., Tsolakou, T., Wang, W. & Rades, Thomas, 2014, In: Pharmaceutics. 6, 3, p. 481-93 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    TopBP1/Dpb11 binds DNA anaphase bridges to prevent genome instability

    Germann, S. M., Schramke, V., Pedersen, R. T., Gallina, I., Eckert-Boulet, N., Østergaard, Vibe Hallundbæk & Lisby, Michael, 2014, In: Journal of Cell Biology. 204, 1, p. 45-59 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Unveiling cell surface and type IV secretion proteins responsible for archaeal rudivirus entry

    Deng, Ling, He, F., Bhoobalan, Yuvaraj, Martinez Alvarez, Laura, Guo, Y. & Peng, Xu, 2014, In: Journal of Virology. 88, 17, p. 10264-10268 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Upregulated baseline plasma CCL19 and CCR7 cell-surface expression on monocytes in early rheumatoid arthritis normalized during treatment and CCL19 correlated with radiographic progression

    Ellingsen, T., Hansen, I., Thorsen, J., Møller, B. K., Tarp, U., Lottenburger, T., Andersen, L. S., Skjødt, H., Pedersen, J. K., Lauridsen, U. B., Svendsen, A., Lindegaard, H., Jacobsen, S., Østergaard, M., Vestergaard, A., Jurik, A. G., Junker, P., Christensen, A. F., Hetland, M. L., Hørslev-Petersen, K. & 1 others, Stengaard-Pedersen, K., 2014, In: Scandinavian Journal of Rheumatology. 43, 2, p. 91-100 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    relax: the analysis of biomolecular kinetics and thermodynamics using NMR relaxation dispersion data

    Morin, S., Linnet, T. E., Lescanne, M., Schanda, P., Thompson, G. S., Tollinger, M., Teilum, Kaare, Gagne, S., Marion, D., Griesinger, C., Blackledge, M. & d’Auvergne, E. J., 2014, In: Bioinformatics. 30, 15, p. 2219-2220 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. 2013
  85. Published

    Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

    Orlando, L. A. A., Ginolhac, A., Zhang, G., Froese, D., Albrechtsen, A., Stiller, M., Schubert, M., Cappellini, E., Petersen, B., Moltke, I., Johnson, P. L. F., Fumagalli, M., Mouatt, J. T. V., Raghavan, M., Korneliussen, T. S., Malaspinas, A. S., Vogt, J., Szklarczyk, D. M., Kelstrup, C., Vinther, J. & 36 others, Dolocan, A., Stenderup, Jesper Tandberg, Velazquez, A. M. V., Cahill, J., Rasmussen, M., Wang, X., Min, J., Zazula, G. D., Seguin-Orlando, A., Mortensen, C., Magnussen, K., Thompson, J. F., Weinstock, J., Gregersen, K., Røed, K. H., Eisenmann, V., Rubin, C. J., Miller, D. C., Antczak, D. F., Bertelsen, M. F., Brunak, S., Al-Rasheid, K. A. S., Ryder, O., Andersson, L., Mundy, J., Krogh, Anders, Gilbert, M Thomas P, Kjær, Kurt H., Sicheritz-Pontén, T., Jensen, Lars Juhl, Olsen, Jesper Velgaard, Hofreiter, M., Nielsen, R., Shapiro, B., Wang, J. & Willerslev, Eske, 4 Jul 2013, In: Nature. 499, 7456, p. 74-78 5 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  86. Published

    Physical mapping and cloning of RAD56

    Mathiasen, D. P., Gallina, I., Germann, S. M., Hamou, W., Eléouët, M., Thodberg, S., Eckert-Boulet, N., Game, J. & Lisby, Michael, 25 Apr 2013, In: Gene. 519, 1, p. 182-186 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    Rapid selection of Plasmodium falciparum chloroquine resistance transporter gene and multidrug resistance gene-1 haplotypes associated with past chloroquine and present artemether-lumefantrine use in Inhambane District, southern Mozambique

    Thomsen, T. T., Madsen, L. B., Hansson, Helle Smedegaard, Tomás, E. V. E., Charlwood, D., Bygbjerg, Ib Christian & Alifrangis, Michael, Mar 2013, In: American Journal of Tropical Medicine and Hygiene. 88, 3, p. 536-41 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    A novel carboxyl-terminal protease derived from Paenibacillus lautus CHN26 exhibiting high activities at multiple sites of substrates

    Li, Y., Pan, Y., She, Q. & Chen, L., 2013, In: B M C Biotechnology. 13, 13 p., 89.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    A novel interference mechanism by a type IIIB CRISPR-Cmr module in Sulfolobus

    Deng, Ling, Garrett, Roger Antony, Shah, S. A., Peng, Xu & She, Q., 2013, In: Molecular Microbiology. 87, 5, p. 1088-1099 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana

    Jensen, M. K., Lindemose, Søren, Masi, F. D., Reimer, J. J., Nielsen, M., Perera, V., Workman, C. T., Turck, F., Grant, M. R., Mundy, J., Petersen, Morten & Skriver, Karen, 2013, In: FEBS Open Bio. 3, p. 321-327 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    Archaeal type II toxin-antitoxins

    Shah, S. A. & Garrett, Roger Antony, 2013, Prokaryotic toxin-antitoxins. Gerdes, K. (ed.). Springer, p. 225-238 14 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  92. Published

    Biology, biodiversity and application potential of thermophilic viruses

    Uldahl, K. B. & Peng, Xu, 2013, Thermophilic Microbes in Environmental and Industrial Biotechnology: Biotechnology of Thermophiles. Satyanarayana, T., Littlechild, J. & Kawarabayasi, Y. (eds.). Springer, p. 271-304 34 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  93. Published

    Catalase and NO CATALASE ACTIVITY1 promote autophagy-dependent cell death in Arabidopsis

    Hackenberg, T., Juul, T., Auzina, A., Gwizdz, S., Malolepszy, A., Van Der Kelen, K., Dam, S., Bressendorff, Simon, Lorentzen, A. M., Roepstorff, P., Nielsen, K. L., Jorgensen, J., Hofius, D., Van Breusegem, F., Petersen, Morten & Andersen, S. U., 2013, In: Plant Cell. 25, 11, p. 4616-4626 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    Characterising the CRISPR immune system in Archaea using genome sequence analysis

    Shah, S. A., 2013, Department of Biology, Faculty of Science, University of Copenhagen. 219 p.

    Research output: Book/Report › Ph.D. thesis › Research

  95. Published

    Concerted action of the Ubiquitin-Fusion Degradation Protein 1 (Ufd1) and Sumo-Targeted Ubiquitin Ligases (STUbLs) in the DNA-damage response

    Køhler, J. B., Jørgensen, M. L. M., Beinoraite, G., Thorsen, M. & Thon, Genevieve, 2013, In: P L o S One. 8, 11, 15 p., e80442.

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Cyclic peptide inhibitors of the β-sliding clamp in Staphylococcus aureus

    Kjelstrup, S., Hansen, P. M. P., Thomsen, Line Elnif, Hansen, Paul Robert & Løbner-Olesen, Anders, 2013, In: P L o S One. 8, 9, 13 p., e72273.

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    Discovery and seminal developments in the CRISPR field

    Mojica, F. J. M. & Garrett, Roger Antony, 2013, CRISPR-Cas Systems: RNA-mediated Adaptive Immunity in Bacteria and Archaea. Barrangou, R. & van der Oost, J. (eds.). Springer VS, p. 1-31 31 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  98. Published

    Exposure to Cr(VI) induces organ dependent MSI in two loci related with photophosphorylation and with glutamine metabolism

    Rodriguez, E., Azevedo de Silva, R., Remédios, C., Almeida, T., Fernandes, P. & Santos, C., 2013, In: Journal of Plant Physiology. 170, 5, p. 534-538 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Genetic determinants of PAM-dependent DNA targeting and pre-crRNA processing in Sulfolobus islandicus

    Peng, W., Li, H., Hallstrøm, S., Peng, N., Liang, Y. X. & She, Q., 2013, In: R N A Biology. 10, 5, p. 1-11 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    Genetic manipulation in Sulfolobus islandicus and functional analysis of DNA repair genes

    Zhang, C., Tian, B., Li, S., Ao, X., Dalgaard, K., Gökce, S., Liang, Y. & She, Q., 2013, In: Biochemical Society Transactions. 41, 1, p. 405-410 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  101. Published

    Genome Sequence of a Novel Archaeal Fusellovirus Assembled from the Metagenome of a Mexican Hot Spring

    Servin-Garciduenas, L. E., Peng, Xu, Garrett, Roger Antony & Martinez-Romero, E., 2013, In: Genome Announcements. 1, p. 1-2 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  102. Published

    Genome Sequence of a Novel Archaeal Rudivirus Recovered from a Mexican Hot Spring

    Servín-Garcidueñas, L., Peng, Xu, Garrett, Roger Antony & Martínez-Romero, E., 2013, In: Genome Announcements. 1, 1, p. 1-2 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  103. Published

    Genome Sequence of the Acidophilic Bacterium Acidocella sp. Strain MX-AZ02

    Servín-Garcidueñas, L. E., Garrett, Roger Antony, Amils, R. & Martínez-Romero, E., 2013, In: Genome Announcements. 1, 1, p. 1-2 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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