- 2007
- Published
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.
Birney, E., Stamatoyannopoulos, J. A., Dutta, A., Guigó, R., Gingeras, T. R., Margulies, E. H., Weng, Z., Snyder, M., Dermitzakis, E. T., Thurman, R. E., Kuehn, M. S., Taylor, C. M., Neph, S., Koch, C. M., Asthana, S., Malhotra, A., Adzhubei, I., Greenbaum, J. A., Andrews, R. M., Flicek, P. & 36 others, , 2007, In: Nature. 447, 7146, p. 799-816 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
KBERG: KnowledgeBase for Estrogen Responsive Genes.
Tang, S., Zhang, Z., Tan, S. L., Tang, M. E., Kumar, A. P., Ramadoss, S. K. & Bajic, V. B., 2007, In: Nucleic Acids Research. 35, Database issue, p. D732-6Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mammalian RNA polymerase II core promoters: insights from genome-wide studies.
Sandelin, Albin Gustav, Carninci, P., Lenhard, B., Ponjavic, J., Hayashizaki, Y. & Hume, D. A., 2007, In: Nature Reviews. Genetics. 8, 6, p. 424-36 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Molecular composition of IMP1 ribonucleoprotein granules.
Jønson, L., Vikesaa, J., Krogh, Anders, Nielsen, Lars Kamp, Hansen, T. V., Borup, R., Johnsen, A. H., Christiansen, Jan & Nielsen, Finn Cilius, 2007, In: Molecular and Cellular Proteomics. 6, 5, p. 798-811 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Nonmalignant T cells stimulate growth of T-cell lymphoma cells in the presence of bacterial toxins
Woetmann, Anders , Lovato, P., Eriksen, K. W., Krejsgaard, T., Labuda, T., Zhang, Q., Mathiesen, A., Geisler, Carsten, Svejgaard, A., Wasik, M. A. & Ødum, Niels, 2007, In: Blood. 109, 8, p. 3325-32 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Novel bacterial sulfur oxygenase reductases from bioreactors treating gold-bearing concentrates
Chen, Z., Liu, Y., Wu, J., She, Q., Jiang, C. & Liu, S., 2007, In: Applied Microbiology and Biotechnology. 74, 3, p. 688-98 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Phylogeography, hybridization and Pleistocene refugia of the kob antelope (Kobus kob)
Lorenzen, E. D., De Neergaard, R., Arctander, P. & Siegismund, Hans Redlef, 2007, In: Molecular Ecology. 16, 15, p. 3241-52 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Population genetic structure of the common warthog (Phacochoerus africanus) in Uganda: evidence for a strong philopatry among warthogs and social structure breakdown in a disturbed population
Muwanka, V. B., Nyakaana, S., Siegismund, Hans Redlef & Arctander, P., 2007, In: African Journal of Ecology. 45, 1, p. 22-30Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rad52 and Rad59 exhibit both overlapping and distinct functions
Feng, Q., Düring, L., Mayolo, A. A. D., Lettier, G., Lisby, Michael, Erdeniz, N., Mortensen, U. H. & Rothstein, R., 2007, In: DNA Repair. 6, 1, p. 27-37Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rad52 and Rad59 exhibit both overlapping and distinct functions
Feng, Q., Düring, L., de Mayolo, A. A., Buchhorn, G. L., Lisby, Michael, Erdeniz, N., Mortensen, U. H. & Rothstein, R., 2007, In: DNA Repair. 6, 1, p. 27-37 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rad52 multimerization is important for its nuclear localization in Saccharomyces cerevisiae.
Plate, I., Albertsen, L., Lisby, Michael, Hallwyl, S. C. L., Feng, Q., Seong, C., Rothstein, R., Sung, P. & Mortensen, U. H., 2007, In: DNA Repair. 7, 1, p. 57-66 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Stability of Barley stripe mosaic virus-induced gene silencing in barley.
Bruun-Rasmussen, M., Madsen, C. T., Jessing, S. & Albrechtsen, M. T., 2007, In: Molecular Plant - Microbe Interactions. 20, 11, p. 1323-31 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Structured RNAs in the ENCODE selected regions of the human genome.
Washietl, S., Pedersen, J. S., Korbel, J. O., Stocsits, C., Gruber, A. R., Hackermüller, J., Hertel, J., Lindemeyer, M., Reiche, K., Tanzer, A., Ucla, C., Wyss, C., Antonarakis, S. E., Denoeud, F., Lagarde, J., Drenkow, J., Kapranov, P., Gingeras, T. R., Guigó, R., Snyder, M. & 4 others, , 2007, In: Genome Research. 17, 6, p. 852-64 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Slx5-Slx8 complex affects sumoylation of DNA repair proteins and negatively regulates recombination.
Burgess, R. C., Rahman, S., Lisby, Michael, Rothstein, R. & Zhao, X., 2007, In: Molecular and Cellular Biology. 27, 17, p. 6153-62 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Smc5-Smc6 complex and SUMO modification of Rad52 regulates recombinational repair at the ribosomal gene locus.
Torres-Rosell, J., Sunjevaric, I., De Piccoli, G., Sacher, M., Eckert-Boulet, N., Reid, R., Jentsch, S., Rothstein, R., Aragón, L. & Lisby, Michael, 2007, In: Nature Cell Biology. 9, 8, p. 923-31 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The UCSC Genome Browser Database: 2008 update.
Karolchik, D., Kuhn, R. M., Baertsch, R., Barber, G. P., Clawson, H., Diekhans, M., Giardine, B., Harte, R. A., Hinrichs, A. S., Hsu, F., Kober, K. M., Miller, W., Pedersen, J. S., Pohl, A., Raney, B. J., Rhead, B., Rosenbloom, K. R., Smith, K. E., Stanke, M., Thakkapallayil, A. & 5 others, , 2007, In: Nucleic Acids Research. 36, Database issue, p. D773-9Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The genome of Hyperthermus butylicus: a sulfur-reducing, peptide fermenting, neutrophilic Crenarchaeote growing up to 108 degrees C
Brügger, K., Chen, L., Stark, M., Zibat, A., Redder, P., Ruepp, A., Awayez, M., She, Q., Garrett, Roger Antony & Klenk, H., 2007, In: Archaea. 2, 2, p. 127-35 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Theoretical analysis of epigenetic cell memory by nucleosome modification
Dodd, I. B., Micheelsen, M. A., Sneppen, Kim & Thon, Genevieve, 2007, In: Cell. 129, 4, p. 813-22 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Transcriptional Analysis of the Genetic Element pSSVx: Differential and Temporal Regulation of Gene Expression Reveals Correlation between Transcription and Replication
Contursi, P., Cannio, R., Prato, S., She, Q., Rossi, M. & Bartolucci, S., 2007, In: Journal of Bacteriology. 189, 17, p. 6339-50 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Using an alignment of fragment strings for comparing protein structures.
Friedberg, I., Harder, T., Kolodny, R., Sitbon, E., Li, Z. & Godzik, A., 2007, In: Bioinformatics. 23, 2, p. e219-24Research output: Contribution to journal › Journal article › Research › peer-review
- 2006
- Published
Viruses of the Archaea: a unifying view
Prangishvili, D., Forterre, P. & Garrett, Roger Antony, 1 Nov 2006, In: Nature Reviews. Microbiology. 4, 11, p. 837-48 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The role of DNA double-strand breaks in spontaneous homologous recombination in S. cerevisiae
Lettier, G., Feng, Q., De Mayolo, A. A., Erdeniz, N., Reid, R. J. D., Lisby, Michael, Mortensen, U. H. & Rothstein, R., Nov 2006, In: PLOS Genetics. 2, 11, p. 1773-1786 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
RAD18-independent ubiquitination of proliferating-cell nuclear antigen in the avian cell line DT40
Simpson, L. J., Ross, A. L., Szüts, D., Alviani, C. A., Østergaard, Vibe Hallundbæk, Patel, K. J. & Sale, J. E., 1 Sep 2006, In: EMBO Reports. 7, 9, p. 927-932 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mediastinalt parathyroideacysteadenom--en sjaelden årsag til primaer hyperparatyroidisme
Øgard, C. G., Nielsen, S. L., Jakobsen, H., Leth-Espensen, P., drb459, drb459 & drb459, drb459, 28 Aug 2006, In: Ugeskrift for Laeger. 168, 35, p. 2921-2 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Actin homolog MreB and RNA polymerase interact and are both required for chromosome segregation in Escherichia coli
Kruse, Thomas, Blagoev, B., Løbner-Olesen, Anders, Wachi, M., Sasaki, K., Iwai, N., Mann, Matthias & Gerdes, K., 1 Jan 2006, In: Genes & Development. 20, 1, p. 113-124 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A putative flavin-containing mono-oxygenase as a marker for certain defense and cell death pathways
Olszak, B., Malinovsky, F. G., Brodersen, P., Grell, M., Giese, H., Petersen, Morten & Mundy, J., 2006, In: Plant Science. 170, 3, p. 614-623Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A putative viral defence mechanism in archaeal cells
Lillestøl, R. K., Redder, P., Garrett, Roger Antony & Brügger, K., 2006, In: Archaea. 2, 1, p. 59-72 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An RNA gene expressed during cortical development evolved rapidly in humans.
Pollard, K. S., Salama, S. R., Lambert, N., Lambot, M., Coppens, S., Pedersen, J. S., Katzman, S., King, B., Onodera, C., Siepel, A., Kern, A. D., Dehay, C., Igel, H., Ares, M., Vanderhaeghen, P. & Haussler, D., 2006, In: Nature. 443, 7108, p. 167-72 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Arabidopsis MAP kinase 4 regulates salicylic acid- and jasmonic acid/ethylene-dependent responses via EDS1 and PAD4
Brodersen, K. P., Petersen, Morten, Nielsen, H. B., Zhu, S., Newman, Mari-Anne, Shokat, K. M., Rietz, S., Parker, J. & Mundy, J., 2006, In: Plant Journal. 47, 4, p. 532-546 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Crystallization and preliminary X-ray diffraction analysis of protein 14 from Sulfolobus islandicus filamentous virus (SIFV)
Goulet, A., Spinelli, S., Campanacci, V., Porciero, S., Blangy, S., Garrett, Roger Antony, van Tilbeurgh, H., Leulliot, N., Basta, T., Prangishvili, D. & Cambillau, C., 2006, In: Acta Crystallographica. Section F : Structural Biology and Crystallization Communications. 62, Pt 9, p. 884-886 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dynamic usage of transcription start sites within core promoters.
Kawaji, H., Frith, M. C., Katayama, S., Sandelin, Albin Gustav, Kai, C., Kawai, J., Carninci, P. & Hayashizaki, Y., 2006, In: Genome Biology. 7, 12, p. R118Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Forces shaping the fastest evolving regions in the human genome.
Pollard, K. S., Salama, S. R., King, B., Kern, A. D., Dreszer, T., Katzman, S., Siepel, A., Pedersen, J. S., Bejerano, G., Baertsch, R., Rosenbloom, K. R., Kent, J. & Haussler, D., 2006, In: PLoS Genetics. 2, 10, p. e168Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome-wide occupancy profile of mediator and the Srb8-11 module reveals interactions with coding regions
Zhu, X., Wirén, M., Sinha, I., Rasmussen, N. N., Linder, T., Holmberg, Steen, Ekwall, K. & Gustafsson, C. M., 2006, In: Molecular Cell. 22, 2, p. 169-78 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
How to induce non-polarized cells of hepatic origin to express typical hepatocyte polarity: generation of new highly polarized cell models with developed and functional bile canaliculi
Peng, Xu & Grosse B, Le Tiec B, Nicolas V, Delagebeaudeuf C, Bedda T, Decaens C, Cassio D, G. B. L. T. B. N. V. D. C. B. T. D. C. C. D., 2006, In: Cell and Tissue Research.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Hybridization between subspecies of waterbuck (Kobus ellipsiprymnus) in zones of overlap with limited introgression
Lorenzen, Eline, Simonsen, Bo Thisted, Kat, P. W., Arctander, P. & Siegismund, Hans Redlef, 2006, In: Molecular Ecology. 15, 12, p. 3787-99 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification and classification of conserved RNA secondary structures in the human genome.
Pedersen, J. S., Bejerano, G., Siepel, A., Rosenbloom, K., Lindblad-Toh, K., Lander, E. S., Kent, J., Miller, W. & Haussler, D., 2006, In: PLoS Computational Biology. 2, 4, p. e33Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification of miRNA targets with stable isotope labeling by amino acids in cell culture.
Vinther, Jeppe, Hedegaard, M. M., Gardner, P. P., Andersen, J. S. & Arctander, P., 2006, In: Nucleic Acids Research. 34, 16, p. e107Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Inducible cell death in plant immunity.
Hofius, D., Tsitsigiannis, D. I., Jones, J. D. G. & Mundy, J., 2006, In: Seminars in Cancer Biology. 17, 2, p. 166-87 21 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
JAFA: a protein function annotation meta-server.
Friedberg, I., Harder, T. & Godzik, A., 2006, In: Nucleic Acids Research. 34, Web Server issue, p. W379-81Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Jak3- and JNK-dependent vascular endothelial growth factor expression in cutaneous T-cell lymphoma
Krejsgaard, T., Vetter-Kauczok, C. S., Woetmann, Anders , Lovato, P., Labuda, T., Eriksen, K. W., Zhang, Q., Becker, J. C. & Ødum, Niels, 2006, In: Leukemia. 20, 10, p. 1759-66 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Novel overlapping coding sequences in Chlamydia trachomatis
Jensen, K. T., Petersen, L., Falk, S., Iversen, P., Andersen, P., Theisen, Michael & Krogh, Anders, 2006, In: FEMS Microbiology Reviews. 265, 1, p. 106-17Research output: Contribution to journal › Journal article › Research › peer-review
- Published
RNA-binding IMPs promote cell adhesion and invadopodia formation.
Vikesaa, J., Hansen, T. V. O., Jønson, L., Borup, R., Wewer, Ulla M., Christiansen, Jan & Nielsen, Finn Cilius, 2006, In: EMBO Journal. 25, 7, p. 1456-68 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
STAT3 induces transcription of the DNA methyltransferase 1 gene (DNMT1) in malignant T lymphocytes
Zhang, Q., Wang, H. Y., Woetmann, Anders , Raghunath, P. N., Ødum, Niels & Wasik, M. A., 2006, In: Blood. 108, 3, p. 1058-64 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spironolactone induces apoptosis and inhibits NF-kappaB independent of the mineralocorticoid receptor
Sønder, S. U. S., Woetmann, Anders , Ødum, Niels & Bendtzen, K., 2006, In: Apoptosis. 11, 12, p. 2159-65 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Structural and genomic properties of the hyperthermophilic archaeal virus ATV with an extracellular stage of the reproductive cycle
Prangishvili, D., Vestergaard, G. A., Häring, M., Aramayo, R., Basta, T., Rachel, R. & Garrett, Roger Antony, 2006, In: Journal of Molecular Biology. 359, 5, p. 1203-1216 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Sulfolobus genomes: mechanisms of rearrangement and change
Brügger, K., Peng, Xu & Garrett, Roger Antony, 2006, Archaea: Evolution, physiology and Molecular Biolog.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
The UCSC Genome Browser Database: update 2006.
Hinrichs, A. S., Karolchik, D., Baertsch, R., Barber, G. P., Bejerano, G., Clawson, H., Diekhans, M., Furey, T. S., Harte, R. A., Hsu, F., Hillman-Jackson, J., Kuhn, R. M., Pedersen, J. S., Pohl, A., Raney, B. J., Rosenbloom, K. R., Siepel, A., Smith, K. E., Sugnet, C. W., Sultan-Qurraie, A. & 7 others, , 2006, In: Nucleic Acids Research. 34, Database issue, p. D590-8Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The UCSC genome browser database: update 2007.
Kuhn, R. M., Karolchik, D., Zweig, A. S., Trumbower, H., Thomas, D. J., Thakkapallayil, A., Sugnet, C. W., Stanke, M., Smith, K. E., Siepel, A., Rosenbloom, K. R., Rhead, B., Raney, B. J., Pohl, A., Pedersen, J. S., Hsu, F., Hinrichs, A. S., Harte, R. A., Diekhans, M., Clawson, H. & 5 others, , 2006, In: Nucleic Acids Research. 35, Database issue, p. D668-73Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The cyclin-dependent kinase 8 module sterically blocks Mediator interactions with RNA polymerase II
Elmlund, H., Baraznenok, V., Lindahl, M., Samuelsen, C. O., Koeck, P. J. B., Holmberg, Steen, Hebert, H. & Gustafsson, C. M., 2006, In: Proceedings of the National Academy of Science of the United States of America. 103, 43, p. 15788-93 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Three genetically divergent lineages of the Oryx in eastern Africa: Evidence for an ancient introgressive hybridization
Masembe, C., Muwanika, V. B., Nyakaana, S., Arctander, P. & Siegismund, Hans Redlef, 2006, In: Conservation Genetics. 7, 4, p. 551-562Research output: Contribution to journal › Journal article › Research › peer-review
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Receptor-like kinase complexes in plant innate immunity
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MAP kinase cascades in Arabidopsis innate immunity
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relax: the analysis of biomolecular kinetics and thermodynamics using NMR relaxation dispersion data
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PICH deficiency limits the progression of MYC-induced B-cell lymphoma
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Bacterial chromosomes and their replication
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