- Published
Identification of the archaeal regulatory network in DNA damage response
Feng, X., 2018, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Discovery and Characterization of a Novel Thermostable β-Amino Acid Transaminase from a Meiothermus Strain Isolated in an Icelandic Hot Spring
Ferrandi, E. E., Bassanini, I., Sechi, B., Vanoni, M., Tessaro, D., Gudbergsdóttir, S. R., Riva, S., Peng, Xu & Monti, D., 2020, In: Biotechnology Journal. 15, 11, 9 p., 2000125.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Discovery and characterization of thermophilic limonene-1,2-epoxide hydrolases from hot spring metagenomic libraries
Ferrandi, E. E., Sayer, C., Isupov, M. N., Annovazzi, C., Marchesi, C., Iacobone, G., Peng, Xu, Bonch-Osmolovskaya, E., Wohlgemuth, R., Littlechild, J. A. & Monti, D., 2015, In: F E B S Journal. 282, 15, p. 2879-2894 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Novel thermostable amine transferases from hot spring metagenomes
Ferrandi, E. E., Previdi, A., Bassanini, I., Riva, S., Peng, Xu & Monti, D., Jun 2017, In: Applied Microbiology and Biotechnology. 101, 12, p. 4963-4979 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Short-term kinetics of rRNA degradation in Escherichia coli upon starvation for carbon, amino acid, or phosphate
Fessler, M., Gummesson, Bertil, Charbon, Godefroid, Svenningsen, Sine Lo & Sørensen, Michael Askvad, 2020, In: Molecular Microbiology. 113, 5, p. 951-963 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Nucleotide diversity and linkage disequilibrium of nine genes with putative effects on flowering time in perennial ryegrass (Lolium perenne L.)
Fiil, A., Lenk, I., Petersen, K., Jensen, C. S., Nielsen, K. K., Schejbel, B., Andersen, J. R. & Lübberstedt, T., 2011, In: Plant Science. 180, 2, p. 228-237 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Gene regulation by MAP kinase cascades
Fiil, Berthe Katrine, Petersen, K., Petersen, Morten & Mundy, J., 2009, In: Current Opinion in Plant Biology. 12, 5, p. 615-621 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Antimicrobial and Antivirulence Action of Eugenia brejoensis Essential Oil in vitro and in vivo Invertebrate Models
Filho, C. M. B., da Silva, L. C. N., da Silva, M. V., Løbner-Olesen, Anders, Struve, C., Krogfelt, K. A., Correia, M. T. D. S. & Oliva, M. L. V., 2020, In: Frontiers in Microbiology. 11, 11 p., 424.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Diversity of type II toxin-antitoxin systems of enterobacteria and their contribution to antibiotic persistence
Fino, C., 2020, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
PasT of Escherichia coli sustains antibiotic tolerance and aerobic respiration as a bacterial homolog of mitochondrial Coq10
Fino, C., Vestergaard, M., Ingmer, Hanne, Pierrel, F., Gerdes, K. & Harms, A., 2020, In: MicrobiologyOpen. 9, 8, 36 p., e1064.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DNA repair
Fleck, O. & Nielsen, Olaf, 1 Feb 2004, In: Journal of Cell Science. 117, Pt 4, p. 515-7 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spd1 accumulation causes genome instability independently of ribonucleotide reductase activity but functions to protect the genome when deoxynucleotide pools are elevated
Fleck, O., Vejrup-Hansen, R., Watson, A., Carr, A. M., Nielsen, Olaf & Holmberg, Christian, 2013, In: Journal of Cell Science. 126, p. 4985-4994 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deoxynucleoside salvage in fission yeast allows rescue of ribonucleotide reductase deficiency but not Spd1-mediated inhibition of replication
Fleck, O., Fahnøe, Ulrik, Løvschal, K. V., Gasasira, M. U., Marinova, I. N., Kragelund, Birthe Brandt, Carr, A. M., Hartsuiker, E., Holmberg, Christian & Nielsen, Olaf, 25 Apr 2017, In: Genes. 8, 5, 14 p., 128.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Protein Structure Prediction Using Bee Colony Optimization Metaheuristic: Extended Abstract
Fonseca, R., Paluszewski, M. & Winter, Pawel, 2008, In: Koebenhavns Universitet. Datalogisk Institut. Rapport. 12, 11 p.Research output: Contribution to journal › Conference abstract in journal › Research
- Published
Plants flex their skeletons.
Foster, R., Mattsson, O. & Mundy, J., 2003, In: Trends in Plant Science. 8, 5, p. 202-4 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Plant autoimmunity - fresh insights into an old phenomenon
Freh, M., Gao, Jinlan, Petersen, Morten & Panstruga, R., 2022, In: Plant Physiology. 188, 3, p. 1419-1434 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
JAFA: a protein function annotation meta-server.
Friedberg, I., Harder, T. & Godzik, A., 2006, In: Nucleic Acids Research. 34, Web Server issue, p. W379-81Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Using an alignment of fragment strings for comparing protein structures.
Friedberg, I., Harder, T., Kolodny, R., Sitbon, E., Li, Z. & Godzik, A., 2007, In: Bioinformatics. 23, 2, p. e219-24Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Determination of the optimal chromosomal location(s) for a DNA element in Escherichia coli using a novel transposon-mediated approach
Frimodt-Møller, Jakob, Charbon, Godefroid, Krogfelt, K. A. & Løbner-Olesen, Anders, 11 Sep 2017, In: Journal of Visualized Experiments. 127, e55946.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacterial chromosomes and their replication
Frimodt-Møller, Jakob, Boesen, Thias Oberg, Charbon, Godefroid & Løbner-Olesen, Anders, 2024, Molecular Medical Microbiology. Tang, Y-W., Hindiyeh, M. Y., Liu, D., Sails, A., Spearman, P. & Zhang, J-R. (eds.). 3 ed. Academic Press, Vol. 1. p. 279-307 29 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
DNA replication control is linked to genomic positioning of control regions in Escherichia coli
Frimodt-Møller, Jakob, Charbon, Godefroid, Krogfelt, K. A. & Løbner-Olesen, Anders, 2016, In: P L o S Genetics. 12, 9, 27 p., e1006286.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Activating the Cpx response induces tolerance to antisense PNA delivered by an arginine-rich peptide in Escherichia coli
Frimodt-Møller, Jakob, Koulouktsis, A., Charbon, Godefroid, Otterlei, M., Nielsen, Peter E. & Løbner-Olesen, Anders, 2021, In: Molecular Therapy - Nucleic Acids. 25, p. 444-454 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Initiation of Replication in Escherichia coli: A Comprehensive Study in Regulation of Initiation and the Interlink to Chromosomal Organization
Frimodt-Møller, Jakob, 2015, Department of Biology, Faculty of Science, University of Copenhagen. 205 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Control regions for chromosome replication are conserved with respect to sequence and location among Escherichia coli strains
Frimodt-Møller, Jakob, Charbon, Godefroid, Krogfelt, K. A. & Løbner-Olesen, Anders, 2015, In: Frontiers in Microbiology. 6, 15 p., 1011.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Control of bacterial chromosome replication by non-coding regions outside the origin
Frimodt-Møller, Jakob, Charbon, Godefroid & Løbner-Olesen, Anders, 2017, In: Current Genetics. 63, 4, p. 607-611 5 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Translocation of non-lytic antimicrobial peptides and bacteria penetrating peptides across the inner membrane of the bacterial envelope
Frimodt-Møller, Jakob, Campion, C., Nielsen, Peter E. & Løbner-Olesen, Anders, 2022, In: Current Genetics. 68, 1, p. 83-90Research output: Contribution to journal › Review › Research › peer-review
- Published
Efflux-Pump Upregulation: From Tolerance to High-level Antibiotic Resistance?
Frimodt-Møller, Jakob & Løbner-Olesen, Anders, 2019, In: Trends in Microbiology. 27, 4, p. 291-293Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Inhibition of Flp Recombinase by the Topoisomerase I-targeting Drugs, Camptothecin and NSC-314622
From Frøhlich, R., Hansen, S. G., Lisby, Michael, Grainge, I., Westergaard, O., Jayaram, M. & Knudsen, B. R., 9 Mar 2001, In: Journal of Biological Chemistry. 276, 10, p. 6993-6997 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Virulence, Resistance, and Genomic Fingerprint Traits of Vibrio cholerae Isolated from 12 Species of Aquatic Products in Shanghai, China
Fu, H., Yu, P., Liang, W., Kan, B., Peng, Xu & Chen, L., 2020, In: Microbial Drug Resistance. 26, 12, p. 1526-1539 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Transcriptome analysis of Sulfolobus solfataricus infected with two related fuselloviruses reveals novel insights into the regulation of CRISPR-Cas system
Fusco, S., Liguori, R., Limauro, D., Bartolucci, S., She, Q. & Contursi, P., 2015, In: Biochimie. 118, p. 322-332 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Unravelling the role of the F55 regulator in the transition from lysogeny to UV induction of sulfolobus spindle-shaped virus 1
Fusco, S., She, Q., Fiorentino, G., Bartolucci, S. & Contursi, P., 2015, In: Journal of Virology. 89, 12, p. 6453-6461 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Tlys, a newly identified Sulfolobus spindle-shaped virus 1 transcript expressed in the lysogenic state, encodes a DNA-binding protein interacting at the promoters of the early genes
Fusco, S., She, Q., Bartolucci, S. & Contursi, P., 2013, In: Journal of Virology. 87, 10, p. 5926-5936 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterization and transcriptional analysis of two gene clusters for type IV secretion machinery in Wolbachia of Armadillidium vulgare
Félix, C., Pichon, S., Braquart-Varnier, C., Braig, H., Chen, L., Garrett, Roger Antony, Martin, G. & Grève, P., 2008, In: Research in Microbiology. 159, 6, p. 481-5 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
TopBP1-mediated DNA processing during mitosis
Gallina, I., Christiansen, S. K., Pedersen, R. T., Lisby, Michael & Østergaard, Vibe Hallundbæk, 2016, In: Cell Cycle. 15, 2, p. 176-183 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cmr1/WDR76 defines a nuclear genotoxic stress body linking genome integrity and protein quality control
Gallina, I., S.Colding-Christensen, Camilla, Henriksen, P., Beli, P., Nakamura, K., Offman, J., Barfred, D. P., Pinela da Silva, S. C., Hoffmann, E., Groth, Anja, Choudhary, C. & Lisby, Michael, 2015, In: Nature Communications. 6, 16 p., 6533.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
New aspects of protein stability and turnover in the regulation of genome integrity: the role of Cmr1 and Rad56
Gallina, I., 2013, Department of Biology, Faculty of Science, University of Copenhagen. 195 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Insulin-like growth factor II: complexity of biosynthesis and receptor binding
Gammeltoft, S., Christiansen, Jan, Nielsen, F. C. & Verland, S., 1991, In: Advances in Experimental Medicine and Biology. 293, p. 31-44 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome-wide identification of estrogen receptor alpha-binding sites in mouse liver.
Gao, H., Fält, S., Sandelin, Albin Gustav, Gustafsson, J. & Dahlman-Wright, K., 2007, In: Molecular Endocrinology. 22, 1, p. 10-22 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rfam: updates to the RNA families database
Gardner, P. P., Daub, J., Tate, J. G., Nawrocki, E. P., Kolbe, D. L., Lindgreen, S., Wilkinson, A. C., Finn, R. D., Griffiths-Jones, S., Eddy, S. R. & Bateman, A., 2008, In: Nucleic Acids Research.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mutation of miRNA target sequences during human evolution.
Gardner, P. P. & Vinther, Jeppe, 2008, In: Trends in Genetics. 24, 6, p. 262-5 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Archaeal CRISPR-based immune systems: exchangeable functional modules
Garrett, Roger Antony, Vestergaard, G. A. & Shah, S. A., 2011, In: Trends in Microbiology. 19, 11, p. 549-56 8 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Archaeal Viruses and Their Interactions with CRISPR-Cas Systems
Garrett, Roger Antony, Shah, S. A., Martinez Alvarez, Laura & Peng, Xu, 2020, Biocommunication of Phages. 1 ed. Springer, p. 199-220 22 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
A backward view from 16S rRNA to archaea to the universal tree of life to progenotes Reminiscences of Carl Woese
Garrett, Roger Antony, 2014, In: R N A Biology. 11, 3, p. 232-235 4 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
CRISPR-Cas adaptive immune systems of the sulfolobales: unravelling their complexity and diversity
Garrett, Roger Antony, Shah, S. A., Erdmann, S., Guannan, L., Mousaei, M., León Sobrino, C., Peng, W., Islin, S. R., Deng, Ling, Vestergaard, G., Peng, Xu & She, Q., 2015, In: Life. 5, 1, p. 783-817 35 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Archaeal rRNA operons, intron splicing and homing endonucleases, RNA polymerase operons and phylogeny
Garrett, Roger Antony, Aagaard, C. S., Andersen, M., Dalgaard, J., Lykke-Andersen, J., Phan, H. T. N., Trevisanato, S., Østergaard, L., Larsen, N. & Leffers, H., 1994, In: Systematic and Applied Microbiology. 16, 4, p. 680-691Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Archaeal physiology: the secrets of termination
Garrett, Roger Antony, 2016, In: Nature Microbiology. 1, 2 p., 16159.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metagenomic analyses of novel viruses and plasmids from a cultured environmental sample of hyperthermophilic neutrophiles
Garrett, Roger Antony, Prangishvili, D., Shah, S. A., Reuter, M., Stetter, K. O. & Peng, Xu, 1 Nov 2010, In: Environmental Microbiology. 12, 11, p. 2918-30 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CRISPR-based immune systems of the Sulfolobales: complexity and diversity
Garrett, Roger Antony, Shah, S. A., Vestergaard, G. A., Deng, Ling, Guðbergsdóttir, S. R., Kenchappa, C. S., Erdmann, S. & She, Q., 2011, In: Biochemical Society Transactions. 39, 1, p. 51-57 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Isolation and characterization of the first Xylanolytic hyperthermophilic euryarchaeon Thermococcus sp strain 2319x1 and its unusual multidomain glycosidase
Gavrilov, S. N., Stracke, C., Jensen, K., Menzel, P., Kallnik, V., Slesarev, A., Sokolova, T., Zayulina, K., Bräsen, C., Bonch-Osmolovskaya, E. A., Peng, Xu, Kublanov, I. V. & Siebers, B., 2016, In: Frontiers in Microbiology. 7, 17 p., 552.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbiology: pumping persisters
Gerdes, K. & Semsey, S., 2016, In: Nature. 534, 7605, p. 41-42 2 p.Research output: Contribution to journal › Comment/debate › Research › peer-review
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Receptor-like kinase complexes in plant innate immunity
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MAP kinase cascades in Arabidopsis innate immunity
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relax: the analysis of biomolecular kinetics and thermodynamics using NMR relaxation dispersion data
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