Functional Genomics

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  1. Published

    Dissecting the genome of star fruit (Averrhoa carambola L.)

    Fan, Y., Sahu, S. K., Yang, T., Mu, W., Wei, J., Cheng, L., Yang, J., Mu, R., Liu, J., Zhao, J., Zhao, Y., Xu, X., Liu, X. & Liu, Huan, 2020, In: Horticulture Research. 7, 10 p., 94.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Dissection of Functional Domains of Orc1-2, the Archaeal Global DNA Damage-Responsive Regulator

    Liu, X., Sun, M., Xu, R., Shen, Y., Huang, Q., Feng, X. & She, Q., 2022, In: International Journal of Molecular Sciences. 23, 23, 16 p., 14609.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Dissection of the antimicrobial and hemolytic activity of Cap18: generation of Cap18 derivatives with enhanced specificity

    Ebbensgaard, Anna Elisabeth, Mordhorst, H., Overgaard, M. T., Aarestrup, F. M. & Hansen, E. B., May 2018, In: PLOS ONE. 13, 5, p. 1-25 e0197742.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Dissection of the functional domains of an archaeal holliday junction helicase

    Hong, Y., Chu, M., Li, Y., Ni, J., Sheng, D., Hou, G., She, Q. & Shen, Y., 2012, In: D N A Repair. 11, 2, p. 102-111 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Distribution of CRISPR spacer matches in viruses and plasmids of crenarchaeal acidothermophiles and implications for their inhibitory mechanism

    Shah, S. A., Hansen, Niels Richard & Garrett, Roger Antony, 2009, In: Biochemical Society Transactions. 37, Pt 1, p. 23-8 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Distribution of mtDNA haplotypes in North Atlantic humpback whales: the influence of behaviour on popula­tion structure

    Palsbøll, P. J., Clapham, P. K., Mattila, D. K., Larsen, F., Sears, R., Siegismund, Hans Redlef & Arctander, P., 1995, In: Marine Ecology - Progress Series. 116

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Diverse Aquatic Animal Matrices Play a Key Role in Survival and Potential Virulence of Non-O1/O139 Vibrio cholerae Isolates

    Yan, L., Jin, Y., Zhang, B., Xu, Y., Peng, Xu, Qin, S. & Chen, L., 2022, In: Frontiers in Microbiology. 13, 21 p., 896767.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Diverse CRISPR-Cas responses and dramatic cellular DNA changes and cell death in pKEF9-conjugated Sulfolobus species

    Guannan, L., She, Q. & Garrett, Roger Antony, 2016, In: Nucleic Acids Research. 44, 9, p. 4233-4242 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Diverse gene functions in a soil mobilome

    Luo, W., Xu, Z., Riber, Leise, Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2016, In: Soil Biology & Biochemistry. 101, p. 175-183 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Diversity and Contributions to Nitrogen Cycling and Carbon Fixation of Soil Salinity Shaped Microbial Communities in Tarim Basin

    Ren, M., Zhang, Z., Wang, X., Zhou, Z., Chen, D., Zeng, H., Zhao, S., Chen, L., Hu, Y., Zhang, C., Liang, Y., She, Q., Zhang, Y. & Peng, N., 2018, In: Frontiers in Microbiology. 9, 14 p., 431.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Diversity of Holocene life forms in fossil glacier ice

    Willerslev, Eske, Hansen, Anders Johannes, Christensen, B., Steffensen, Jørgen Peder & Arctander, P., 1999, In: Proceedings of the National Academy of Science of the United States of America. 96, 14, p. 8017-21

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Diversity of type II toxin-antitoxin systems of enterobacteria and their contribution to antibiotic persistence

    Fino, C., 2020, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  13. Published

    Does DAPI detect cytoplasmic DNA?

    Johansen, B. B., Seberg, Ole, Petersen, G. & Arctander, P., 1995, In: American Journal of Botany. 82, 10, p. 1215-1219

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Downstream targets of WRKY33

    Petersen, K., Fiil, Berthe Katrine, Mundy, J. & Petersen, Morten, 2008, In: Plant Signalling & Behavior. 3, 11, p. 1033-1034

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Dpb11/TopBP1 contributes to genomicstability via homologous recombinationand checkpoint signaling

    Germann, S. M., 2009, Biologisk Institut: Museum Tusculanum. 175 p.

    Research output: Book/Report › Ph.D. thesis › Research

  16. Published

    Dpb11/TopBP1 plays distinct roles in DNA replication, checkpoint response and homologous recombination

    Germann, S. M., Østergaard, Vibe Hallundbæk, Haas, C., Salis, P., Motegi, A. & Lisby, Michael, 2011, In: D N A Repair. 10, 2, p. 210-224 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Draft genomes of two Artocarpus plants, Jackfruit (A. heterophyllus) and Breadfruit (A. altilis)

    Sahu, S. K., Liu, M., Yssel, A., Kariba, R., Muthemba, S., Jiang, S., Song, B., Hendre, P. S., Muchugi, A., Jamnadass, R., Kao, S., Featherston, J., Zerega, N. J. C., Xu, X., Yang, H., Van Deynze, A., Van de Peer, Y., Liu, X. & Liu, Huan, 2020, In: Genes. 11, 1, 27.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Drosophila deoxyribonucleoside kinase mutants with enhanced ability to phosphorylate purine analogs

    Knecht, W., Rozpedowska, E., Breton, C. L., Willer, M., Gojkovic, Z., Sandrini, M. P. B., Jørgensen, T., Hasholt, Lis Frydenreich, Munch-Petersen, B. & Piskur, J., 2007, In: Gene Therapy. 14, 17, p. 1278-1286 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Dss1 interaction with Brh2 as a regulatory mechanism for recombinational repair.

    Zhou, Q., Kojic, M., Cao, Z., Lisby, Michael, Mazloum, N. A. & Holloman, W. K., 2007, In: Molecular and Cellular Biology. 27, 7, p. 2512-26 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector-borne viral and plasmid genes and protospacers

    Guðbergsdóttir, S. R., Deng, L., Chen, Z., Jensen, J. V. K., Jensen, L. R., She, Q. & Garrett, Roger Antony, 2011, In: Molecular Microbiology. 79, 1, p. 35-49 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Dynamic usage of transcription start sites within core promoters.

    Kawaji, H., Frith, M. C., Katayama, S., Sandelin, Albin Gustav, Kai, C., Kawai, J., Carninci, P. & Hayashizaki, Y., 2006, In: Genome Biology. 7, 12, p. R118

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Dynamics and stabilization of the human gut microbiome during the first year of life

    Bäckhed, G. F., Roswall, J., Peng, Y., Feng, Q., Jia, H., Kovatcheva-Datchary, P., Li, Y., Xia, Y., Xie, H., Zhong, H., Khan, M. T., Zhang, J., Li, J., Xiao, L., Al-Aama, J., Zhang, D., Lee, Y. S., Kotowska, D. E., Colding, C. S., Tremaroli, V. & 7 others, Yin, Y., Bergman, S., Xu, X., Madsen, L., Kristiansen, Karsten, Dahlgren, J. & Wang, J., 2015, In: Cell Host & Microbe. 17, 5, p. 690-703 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    EGFR induces expression of IRF-1 via STAT1 and STAT3 activation leading to growth arrest of human cancer cells

    Andersen, P., Pedersen, M. W., Woetmann, Anders , Villingshøj, M., Stockhausen, M., Ødum, Niels & Poulsen, H. S., 2008, In: International Journal of Cancer. 122, 2, p. 342-9 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Editing modifies the GABA(A) receptor subunit alpha3.

    Ohlson, J., Pedersen, J. S., Haussler, D. & Ohman, M., 2007, In: RNA: A publication of the RNA Society. 13, 5, p. 698-703 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Effective population size dynamics reveal impacts of historic climatic events and recent anthropogenic pressure in African elephants

    Okello, J. B. A., Wittemyer, G., Rasmussen, H. B., Arctander, P., Nyakaana, S., Douglas-Hamilton, I. & Siegismund, Hans Redlef, 2008, In: Molecular Ecology. 17, 17, p. 3788-3799 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Effects of Antibiotics on the Intestinal Microbiota of Mice

    Hertz, F. B., Budding, A. E., van der Lugt-Degen, M., Savelkoul, P. H., Løbner-Olesen, Anders & Frimodt-Møller, N., 2020, In: Antibiotics. 9, 4, 11 p., 191.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Effects of LPS Composition in Escherichia coli on Antibacterial Activity and Bacterial Uptake of Antisense Peptide-PNA Conjugates

    Goltermann, Lise, Zhang, Meiqin, Ebbensgaard, Anna Elisabeth, Fiodorovaite, M., Yavari, Niloofar, Løbner-Olesen, Anders & Nielsen, Peter E., 2022, In: Frontiers in Microbiology. 13, 877377.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Efficient 5 '-3 ' DNA end resection by HerA and NurA is essential for cell viability in the crenarchaeon Sulfolobus islandicus

    Huang, Q., Liu, L., Liu, J., Ni, J., She, Q. & Shen, Y., 2015, In: B M C Molecular Biology. 16, 14 p., 2.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Efflux-Pump Upregulation: From Tolerance to High-level Antibiotic Resistance?

    Frimodt-Møller, Jakob & Løbner-Olesen, Anders, 2019, In: Trends in Microbiology. 27, 4, p. 291-293

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Ekstremernes herrer

    Uldahl, K. B. & Peng, Xu, 2012, In: Aktuel Naturvidenskab. 2012, 05, p. 28-29 2 p.

    Research output: Contribution to journal › Journal article › Research

  31. Published

    Elucidating the roles of MAP kinases in the moss Physcomitrella patens

    Stanimirovic, S., 2017, Department of Biology, Faculty of Science, University of Copenhagen. 230 p.

    Research output: Book/Report › Ph.D. thesis › Research

  32. Published

    Emergent bacterial community properties induce enhanced drought tolerance in Arabidopsis

    Yang, Nan, Nesme, Joseph, Røder, Henriette Lyng, Li, Xuan Ji, Zuo, Zhangli Thomsen, Petersen, Morten, Burmølle, Mette & Sørensen, Søren Johannes, 2021, In: npj Biofilms and Microbiomes. 7, 11 p., 82.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Emerging roles of the CIP2A–TopBP1 complex in genome integrity

    Ummethum, Henning Ole, Li, Jiayi, Lisby, Michael & Østergaard, Vibe Hallundbæk, 2023, In: NAR Cancer. 5, 4, 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Endonucleolysis in the turnover of insulin-like growth factor II mRNA

    Nielsen, F. C. & Christiansen, Jan, 1992, In: Journal of Biological Chemistry. 267, 27, p. 19404-11 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Energy Starvation Induces a Cell Cycle Arrest in Escherichia coli by Triggering Degradation of the DnaA Initiator Protein

    Charbon, Godefroid, Mendoza-Chamizo, B., Campion, C., Li, X., Jensen, P. R., Frimodt-Møller, Jakob & Løbner-Olesen, Anders, 2021, In: Frontiers in Molecular Biosciences. 8, 9 p., 629953.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Epidemiological factors associated with ESBL- and non ESBL-producing E. coli causing urinary tract infection in general practice

    Hertz, F. B., Schønning, K., Rasmussen, S. C., Littauer, P., Knudsen, J. D., Løbner-Olesen, Anders & Frimodt-Møller, N., 2016, In: Infectious Diseases. 48, 3, p. 241-245 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Erratum: Formation of a viral replication focus in Sulfolobus cells infected by the rudivirus Sulfolobus islandicus rod-shaped virus 2 [Journal of Virology, 91, 13, (2017), (e00486-17)] DOI:10.1128/JVI.00486-17

    Martinez Alvarez, Laura, Deng, Ling & Peng, Xu, 1 Apr 2018, In: Journal of Virology. 92, 7, e01991-17.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  38. Published

    Erratum: A two-step model for senescence triggered by a single critically short telomere: (Nature Cell Biol. (2009) 11 (988-993))

    Abdallah, P., Luciano, P., Runge, K. W., Lisby, Michael, Géli, V., Gilson, E. & Teixeira, M. T., May 2010, In: Nature Cell Biology. 12, 5, p. 520 1 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  39. Published

    Esc2 promotes Mus81 complex-activity via its SUMO-like and DNA binding domains

    Sebesta, M., Urulangodi, M., Stefanovie, B., Szakal, B., Pacesa, M., Lisby, Michael, Branzei, D. & Krejci, L., Jan 2017, In: Nucleic Acids Research. 45, 1, p. 215-230 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Esc2 promotes telomere stability in response to DNA replication stress

    Jørgensen, S. W., Liberti, S. E., Larsen, N. B., Lisby, Michael, Mankouri, H. W. & Hickson, Ian David, 2019, In: Nucleic Acids Research. 47, 9, p. 4597-4611 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Escherichia coli minichromosomes: random segregation and absence of copy number control

    Jensen, M. R., Løbner-Olesen, Anders & Rasmussen, K. V., 20 Sep 1990, In: Journal of Molecular Biology. 215, 2, p. 257-65 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    EstDZ3: a new esterolytic enzyme exhibiting remarkable thermostability

    Zarafeta, D., Szabo, Z., Moschidi, D., Phan, Safir Hien, Chrysina, E. D., Peng, Xu, Ingham, C. J., Kolisis, F. N. & Skretas, G., 2016, In: Frontiers in Microbiology. 7, 14 p., 1779.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Establishment of expression-state boundaries by Rif1 and Taz1 in fission yeast

    Toteva, T., Mason, B., Kanoh, Y., Brøgger, P., Green, D., Hansen, J. V., Masai, H. & Thon, Genevieve, 31 Jan 2017, In: Proceedings of the National Academy of Sciences of the United States of America. 114, 5, p. 1093-1098 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Establishment of heterochromatin in domain-size-dependent bursts

    Nickels, Jan Fabio, Edwards, A. K., Charlton, Sebastian Jespersen, Mortensen, A. M., Hougaard, S. C. L., Trusina, Ala, Sneppen, Kim & Thon, Genevieve, 13 Apr 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 15, 11 p., e2022887118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Ethanol exposure increases mutation rate through error-prone polymerases

    Voordeckers, K., S.Colding-Christensen, Camilla, Grasso, L., Pardo, B., Hoes, L., Kominek, J., Gielens, K., Dekoster, K., Gordon, J., Van der Zande, E., Bircham, P., Swings, T., Michiels, J., Van Loo, P., Nuyts, S., Pasero, P., Lisby, Michael & Verstrepen, K. J., 2020, In: Nature Communications. 11, 16 p., 3664.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Ethyl methanesulfonate mutagenesis in Schizosaccharomyces pombe

    Ekwall, K. & Thon, Genevieve, Aug 2017, In: Cold Spring Harbor Protocols. 2017, 8, p. 643-646 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Euchromatin factors HULC and Set1C affect heterochromatin organization and mating-type switching in fission yeast Schizosaccharomyces pombe

    Esquivel-Chávez, A., Maki, T., Tsubouchi, H., Handa, T., Kimura, H., Haber, J. E., Thon, Genevieve & Iwasaki, H., 2022, In: Genes and Genetic Systems. 97, 3, p. 123-138 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Evidence for the horizontal transfer of an integrase gene from a fusellovirus to a pRN-like plasmid within a single strain of Sulfolobus and the implications for plasmid survival

    Peng, Xu, 2008, In: Microbiology. 154, Pt 2, p. 383-91 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Evolution of alternative splicing regulation: changes in predicted exonic splicing regulators are not associated with changes in alternative splicing levels in primates

    Irimia, M., Rukov, J. L. & Roy, S. W., 2009, In: PLoS ONE. 4, 6, p. e5800

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium

    Clark, A. G., Eisen, M. B., Smith, D. R., Bergman, C. M., Oliver, B., Markow, T. A., Kaufman, T. C., Kellis, M., Gelbart, W., Iyer, V. N., Pollard, D. A., Sackton, T. B., Larracuente, A. M., Singh, N. D., Abad, J. P., Abt, D. N., Adryan, B., Aguade, M., Akashi, H., Anderson, W. W. & 31 others, Aquadro, C. F., Ardell, D. H., Arguello, R., Artieri, C. G., Barbash, D. A., Barker, D., Barsanti, P., Batterham, P., Batzoglou, S., Begun, D., Bhutkar, A., Blanco, E., Bosak, S. A., Bradley, R. K., Brand, A. D., Brent, M. R., Brooks, A. N., Brown, R. H., Butlin, R. K., Caggese, C., Calvi, B. R., Bernardo de Carvalho, A., Caspi, A., Castrezana, S., Celniker, S. E., Chang, J. L., Garcia, A. C. L., Nielsen, Rasmus, Pedersen, J. S., Vieira, Filipe Garrett & Drosophila 12 Genomes Consortium, D. 1. G. C., 2007, In: Nature. 450, 7167, p. 203-18 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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