Functional Genomics

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  1. 2024
  2. Published

    Bacterial chromosomes and their replication

    Frimodt-Møller, Jakob, Boesen, Thias Oberg, Charbon, Godefroid & Løbner-Olesen, Anders, 2024, Molecular Medical Microbiology. Tang, Y-W., Hindiyeh, M. Y., Liu, D., Sails, A., Spearman, P. & Zhang, J-R. (eds.). 3 ed. Academic Press, Vol. 1. p. 279-307 29 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  3. 2021
  4. Published

    Antibiotic Tolerance and Persistence Studied Throughout Bacterial Growth Phases

    Maffei, E., Fino, C. & Harms, A., 2021, Bacterial Persistence: Methods and Protocols. Verstraeten, N. & Michiels, J. (eds.). 2. ed. ed. Humana Press, p. 23-40 18 p. (Methods in Molecular Biology, Vol. 2357).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  5. Published

    DNA Double-Strand Break-Induced Gene Amplification in Yeast

    Strucko, T., Lisby, Michael & Mortensen, U. H., 2021, Homologous Recombination: Methods and Protocols. Aguilera, A. & Carreira, A. (eds.). Humana Press, p. 239-252 14 p. (Methods in Molecular Biology, Vol. 2153).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  6. 2020
  7. Published

    Archaeal Viruses and Their Interactions with CRISPR-Cas Systems

    Garrett, Roger Antony, Shah, S. A., Martinez Alvarez, Laura & Peng, Xu, 2020, Biocommunication of Phages. 1 ed. Springer, p. 199-220 22 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  8. Published

    Origins: It takes a well rooted trunk to bear a tree - reductionist models of divergent evolution and further aspects of reality

    Egel, Richard, 2020, Untangling Molecular Biodiversity: Explaining Unity and Diversity Principles of Organization with Molecular Structure and Evolutionary Genomics. Caetano-Anollés, G. (ed.). World Scientific, p. 223-282 60 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  9. 2019
  10. Published

    Current View of the Mechanisms Controlling the Transcription of the TOL Plasmid Aromatic Degradation Pathways

    Domínguez-Cuevas, P. & Marqués, S., 2019, Aerobic Utilization of Hydrocarbons, Oils, and Lipids. Rojo, F. (ed.). Springer, p. 573-594 (Handbook of Hydrocarbon and Lipid Microbiology).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  11. 2018
  12. Published

    Imaging of DNA Ultrafine Bridges in Budding Yeast

    Quevedo Rodriguez, O. & Lisby, Michael, 2018, Genome Instability: Methods and Protocols. Muzi-Falconi, M. & Brown, G. W. (eds.). Humana Press, p. 483-493 11 p. (Methods in Molecular Biology, Vol. 1672).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  13. Published

    Transcriptome-Wide Analysis of Protein-RNA and RNA-RNA Interactions in Pathogenic Bacteria

    Tree, J. J., Gerdes, K. & Tollervey, D., 2018, High-Density Sequencing Applications in Microbial Molecular Genetics. Carpousis, A. J. (ed.). Academic Press, Vol. 612. p. 467-488 (Methods in Enzymology).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  14. 2017
  15. Published

    CRISPR History: Discovery, Characterization, and Prosperity

    Han, W. & She, Q., 2017, CRISPR in Animals and Animal Models. Torres-Ruiz, R. & Rodriguez-Perales, S. (eds.). Elsevier, p. 1-21 20 p. (Progress in Molecular Biology and Translational Science, Vol. 152).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  16. Published

    Chitin and stress induced protein kinase activation

    Kenchappa, C. S., Azevedo da Silva, R., Bressendorff, Simon, Stanimirovic, S., Olsen, J. V., Petersen, Morten & Mundy, J., 2017, Plant pattern recognition receptors: methods and protocols. Shan, L. & He, P. (eds.). Springer, p. 185-194 10 p. (Methods in Molecular Biology, Vol. 1578).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  17. Published

    Chitin-induced responses in the moss Physcomitrella patens

    Bressendorff, Simon, Rasmussen, M. W., Petersen, Morten & Mundy, J., 2017, Plant pattern recognition receptors: methods and protocols. Shan, L. & He, P. (eds.). Springer, p. 317-324 8 p. (Methods in Molecular Biology, Vol. 1578).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  18. Published

    DNA damage repair in Archaea

    She, Q., Feng, X. & Han, W., 2017, Biocommunication of Archaea. Witzany, G. (ed.). Springer, p. 305-318 14 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  19. Published

    Type III CRISPR/Cas system: introduction and its application for genetic manipulations

    Liu, T., Pan, S., Li, Y., Peng, N. & She, Q., 2017, The CRISPR/Cas system: emerging technology and application. Jamal, M. (ed.). Caister Academic Press, p. 1-13 13 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  20. 2015
  21. Published

    Archaeal viruses of the sulfolobales: isolation, infection, and CRISPR spacer acquisition

    Erdmann, S. & Garrett, Roger Antony, 2015, CRISPR: methods and protocols. Lundgren, M., Charpentier, E. & Fineran, P. C. (eds.). Springer, p. 223-232 10 p. (Methods in Molecular Biology, Vol. 1311).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  22. 2014
  23. Published

    DNA Methylation

    Marinus, M. G. & Løbner-Olesen, Anders, 2014, Synthesis and Processing of Macromolecules. Lovett, S. T. (ed.). ASM Press, (EcoSal Plus: Domain 4).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  24. 2013
  25. Published

    Archaeal type II toxin-antitoxins

    Shah, S. A. & Garrett, Roger Antony, 2013, Prokaryotic toxin-antitoxins. Gerdes, K. (ed.). Springer, p. 225-238 14 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  26. Published

    Biology, biodiversity and application potential of thermophilic viruses

    Uldahl, K. B. & Peng, Xu, 2013, Thermophilic Microbes in Environmental and Industrial Biotechnology: Biotechnology of Thermophiles. Satyanarayana, T., Littlechild, J. & Kawarabayasi, Y. (eds.). Springer, p. 271-304 34 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  27. Published

    Discovery and seminal developments in the CRISPR field

    Mojica, F. J. M. & Garrett, Roger Antony, 2013, CRISPR-Cas Systems: RNA-mediated Adaptive Immunity in Bacteria and Archaea. Barrangou, R. & van der Oost, J. (eds.). Springer VS, p. 1-31 31 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  28. 2012
  29. Published

    CRISPR/Cas and CRISPR/Cmr immune systems of archaea

    Shah, S. A., Vestergaard, G. A. & Garrett, Roger Antony, 2012, Regulatory RNAs in prokaryotes. Springer, p. 163-181 19 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  30. Published

    Live cell microscopy of DNA damage response in Saccharomyces cerevisiae

    Pinela da Silva, S. C., Gallina, I., Eckert-Boulet, N. V. & Lisby, Michael, 2012, DNA repair protocols. Springer Science+Business Media, p. 433-443 11 p. (Methods in Molecular Biology, Vol. 920).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  31. 2011
  32. Published

    Cell biology of homologous recombination in yeast

    Eckert-Boulet, N. V., Rothstein, R. & Lisby, Michael, 2011, DNA recombination: methods and protocols. Tsubouchi, H. (ed.). Springer, p. 523-536 14 p. (Methods in Molecular Biology, Vol. 745).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  33. 2009
  34. Published

    Viruses of the Archaea

    Basta, T., Garrett, Roger Antony & Prangishvili, D., 2009, Encyclopedia of Life Sciences. Wiley, p. 1-8

    Research output: Chapter in Book/Report/Conference proceeding › Encyclopedia chapter › Research

  35. 2008
  36. Published

    Crenarchaeal Viruses: Morphotypes and Genomes,

    Prangishvili, P., Basta, P. & Garrett, Roger Antony, 2008, Encyclopedia of Virology (Third Edition). Mahy, B. W. J. & van Regenmortel, M. H. V. (eds.). Elsevier, Vol. 3rd ed.. p. 587-595

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  37. Published

    Host-vector systems for hyperthermophilic archaeon Sulfolobus

    She, Q., Deng, L., Zhu, H., Dreibrøl, M., Awayez, M. & Liang, Y. X., 2008, Microbes and the Environment: Perspective and Challenges. Liu, S-J. & Drake, H. L. (eds.). Beijing: Science Press, Beijing, p. 151-156 6 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  38. Published

    Protein Decoy Generation Using Branch and Bound with Efficient Bounding

    Paluszewski, M. & Winter, Pawel, 2008, Algorithms in Bioinformatics: 8th International Workshop, WABI 2008, Karlsruhe, Germany, September 15-19, 2008, Proceedings. Crandall, K. A. & Lagergren, J. (eds.). Springer, p. 382-393 12 p. (Lecture Notes in Computer Science : Lecture Notes in Bioinformatics; No. 5251).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

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