Department of Biology

Comparative genomics reveals the hybrid origin of a macaque group

Zhang, B. L., Chen, W., Wang, Z., Pang, W., Luo, M. T., Wang, S., Shao, Y., He, W. Q., Deng, Y., Zhou, L., Chen, J., Yang, M. M., Wu, Y., Wang, L., Fernández-Bellon, H., Molloy, S., Meunier, H., Wanert, F., Kuderna, L., Marques-Bonet, T. & 10 others, Roos, C., Qi, X. G., Li, M., Liu, Z., Schierup, M. H., Cooper, D. N., Liu, J., Zheng, Y. T., KU, thw266 & Wu, D. D., 2023, In: Science Advances. 9, 22, 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

基于 QMEC 分析的青藏高原不同类型冰川前缘地土壤微生物功能潜力

Zhang, J. J., Priemé, Anders, Chen, X. K., Zhou, H. C., Zhang, Q. W., Zhuang, X. L., Qin, X., Zhuang, G. Q. & Ma, A. Z., 2023, In: Huanjing Kexue/Environmental Science. 44, 1, p. 512-519 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

On the origin and evolution of RNA editing in metazoans

Zhang, P., Zhu, Y., Guo, Q., Li, J., Zhan, X., Yu, H., Xie, N., Tan, H., Lundholm, Nina, Garcia-Cuetos, L., Martin, M. D., Subirats, M. A., Su, Y., Ruiz-Trillo, I., Martindale, M. Q., Yu, J., Gilbert, M Thomas P, KU, thw266 & Li, Q., 2023, In: Cell Reports. 42, 2, 22 p., 112112.

Research output: Contribution to journal › Journal article › Research › peer-review

Spatial transcriptome unveils a discontinuous inflammatory pattern in proficient mismatch repair colorectal adenocarcinoma

Zhang, R., Feng, Y., Ma, W., Guo, Y., Luo, M., Li, Y., Zang, Y., Dong, X., Lu, S., Guo, Q., Xu, Q., Chen, H., Li, Y., Liu, L., CHEN, Ao, Chen, G. & Xu, X., 2023, In: Fundamental Research. 3, 4, 7 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Combining a novel biofilm reactor with a constructed wetland for rural, decentralized wastewater treatment

Zhang, R., Liu, X., Wang, L., Xu, P., Li, K., Chen, X., Meng, R., Pu, Y., Yang, X., Rousseau, D. P. L. & Van Hulle, S. W. H., 2023, In: Chemical Engineering Journal. 455, 11 p., 140906.

Research output: Contribution to journal › Journal article › Research › peer-review

A single-cell atlas of West African lungfish respiratory system reveals evolutionary adaptations to terrestrialization

Zhang, R., Liu, Q., Pan, S., Zhang, Y., Qin, Y., Du, X., Yuan, Z., Lu, Y., Song, Y., Zhang, M., Zhang, N., Ma, J., Zhang, Z., Jia, X., Wang, K., He, S., Liu, S., Ni, M., Liu, X., Xu, X. & 4 others, Yang, H., Wang, J., Seim, I. & Fan, G., 2023, In: Nature Communications. 14, 1, 15 p., 5630.

Research output: Contribution to journal › Journal article › Research › peer-review

Sea animal colonies enhance carbonyl sulfide emissions from coastal Antarctic tundra

Zhang, W., Zhu, R., Jiao, Yi, Rhew, R. C., Sun, B., Rinnan, Riikka & Zhou, Z., 2023, In: Communications Earth and Environment. 4, 1, 11 p., 326.

Research output: Contribution to journal › Journal article › Research › peer-review

Replication Protein Rep Provides Selective Advantage to Viruses in the Presence of CRISPR-Cas Immunity

Zhang, W., Bhoobalan-Chitty, Y., Zhai, Xichuan, Hui, Y., Hansen, Lars Hestbjerg, Deng, Ling & Peng, Xu, 2023, In: CRISPR Journal. 6, 1, p. 32-42

Research output: Contribution to journal › Journal article › Research › peer-review

Recent decrease of the impact of tropical temperature on the carbon cycle linked to increased precipitation

Zhang, Wenmin, Schurgers, Guy, Peñuelas, J., Fensholt, Rasmus, Yang, H., Tang, Jing, Tong, Xiaowei, Ciais, P. & Brandt, Martin Stefan, 2023, In: Nature Communications. 14, 1, 9 p., 965.

Research output: Contribution to journal › Journal article › Research › peer-review

Two Novel α-Thalassemia Mutations CD 39 -C [Thr > Pro] and CD 109 ACC > CCC [Thr > Pro] Identified in Two Chinese Families: A Case Report

Zhang, W., Han, X., Deng, J., Zhou, R., Du, X., Wu, C. & Li, M., 2023, In: Hemoglobin. 47, 4, 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Green waste and sewage sludge feeding ratio alters co-composting performance: Emphasis on the role of bacterial community during humification

Zhang, Z., Duan, C., Liu, Y., Li, A., Hu, X., Chen, J., Zhang, S., Li, X., Che, R., Li, S., Ekelund, Flemming & Cui, X., 2023, In: Bioresource Technology. 380, 10 p., 129014.

Research output: Contribution to journal › Journal article › Research › peer-review

The effect of experimental warming on fine root functional traits of woody plants: Data synthesis

Zhao, X., Tian, Q., Michelsen, Anders, Lu, M., Ren, B., Huang, L. & Zhao, R., 2023, In: Science of the Total Environment. 894, 9 p., 165003.

Research output: Contribution to journal › Journal article › Research › peer-review

The effects of mycorrhizal associations on fine root decomposition in temperate and (sub)tropical forests

Zhao, X., Tian, Q., Michelsen, Anders, Lin, Q., Zhao, R., Yuan, X., Chen, L., Zuo, J. & Liu, F., 2023, In: Plant and Soil. 487, 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Comparison of In-Frame Deletion, Homology-Directed Repair, and Prime Editing-Based Correction of Duchenne Muscular Dystrophy Mutations

Zhao, X., Qu, Kunli, Curci, B., Yang, H., Bolund, L., Lin, L. & Luo, Y., 2023, In: Biomolecules. 13, 5, 15 p., 870.

Research output: Contribution to journal › Journal article › Research › peer-review

Expression of genes and enzymes involved in ovarian steroidogenesis in relation to human follicular development

Zheng, M., tcg964, tcg964, Rasmussen, F. R., Cadenas, J., Christensen, Søren Tvorup & Mamsen, L. S., 2023, In: Frontiers in Endocrinology. 14, 17 p., 1268248.

Research output: Contribution to journal › Journal article › Research › peer-review

Eighty million years of rapid evolution of the primate Y chromosome

Zhou, Y., Zhan, X., Jin, J., Zhou, L., Bergman, J., Li, X., Rousselle, M. M. C., Belles, M. R., Zhao, L., Fang, M., Chen, J., Fang, Q., Kuderna, L., Marques-Bonet, T., Kitayama, H., Hayakawa, T., Yao, Y. G., Yang, H., Cooper, D. N., Qi, X. & 3 others, Wu, D. D., Schierup, M. H. & KU, thw266, 2023, In: Nature Ecology and Evolution. 7, 20 p.

Research output: Contribution to journal › Journal article › Research › peer-review

The mRNA decapping machinery targets LBD3/ASL9 to mediate apical hook and lateral root development

Zuo, Zhangli Thomsen, Roux, M. E., Chevalier, J. R., Dagdas, Y. F., Yamashino, T., Højgaard, S. D., Knight, E., Østergaard, L., Rodriguez, Eleazar & Petersen, Morten, 2023, In: Life Science Alliance. 6, 9, 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Combining methods for non-invasive fecal DNA enables whole genome and metagenomic analyses in wildlife biology

de Flamingh, A., Ishida, Y., Chrzanová Pecnerová, Patrícia, Vilchis, S., Siegismund, Hans Redlef, van Aarde, R. J., Malhi, R. S. & Roca, A. L., 2023, In: Frontiers in Genetics. 13, 14 p., 1021004.

Research output: Contribution to journal › Journal article › Research › peer-review

Variation of extrachromosomal circular DNA in cancer cell lines

dos Santos, Carl Henrik Rung, Hansen, Lasse Bøllehuus, Rojas Triana, Monica, Johansen, A. Z., Perez-Moreno, Mirna & Regenberg, Birgitte, 2023, In: Computational and Structural Biotechnology Journal. 21, p. 4207-4214 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Geochemical landscapes as drivers of wildlife reproductive success: Insights from a high-Arctic ecosystem

van Beest, F. M., Schmidt, N. M., Stewart, L., Hansen, L. H., Michelsen, Anders, Mosbacher, J. B., Gilbert, H., Le Roux, G. & Hansson, S. V., 2023, In: Science of the Total Environment. 903, 12 p., 166567.

Research output: Contribution to journal › Journal article › Research › peer-review

Transcription factor expression is the main determinant of variability in gene co-activity

van Duin, Lucas, Krautz, Robert, Rennie, Sarah & Andersson, Robin, 2023, In: Molecular Systems Biology. 19, 7, 17 p., e11392.

Research output: Contribution to journal › Journal article › Research › peer-review

Epigenetic Regulation of Driver Genes in Testicular Tumorigenesis

von Eyben, F. E., Kristiansen, Karsten, Kapp, D. S., Hu, R., Preda, O. & Nogales, F. F., 2023, In: International Journal of Molecular Sciences. 24, 4, 28 p., 4148.

Research output: Contribution to journal › Review › Research › peer-review

Glacial meltwater and seasonality influence community composition of diazotrophs in Arctic coastal and open waters

Winberg von Friesen, Lisa, Paulsen, M. L., Müller, O., Gründger, F. & Riemann, Lasse, 2023, In: F E M S Microbiology Ecology. 99, 8, 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Integrative taxonomy of Central European Planetella (Diptera: Cecidomyiidae) indicates high species diversity, intraspecific variation and low host specificity

Ševčík, J., Hippa, H., Burdíková, N., Sopuch, K., Skuhravá, M. & Bruun, Hans Henrik, 2023, In: Acta Entomologica Musei Nationalis Pragae. 63, 2, p. 413-450 38 p.

Research output: Contribution to journal › Journal article › Research › peer-review

The feather moss Hylocomium splendens affects the transcriptional profile of a symbiotic cyanobacterium in relation to acquisition and turnover of key nutrients

Alvarenga, Danillo Oliveira, Priemé, Anders & Rousk, Kathrin, 2024, In: Microbial Ecology. 87, 11 p., 49.

Research output: Contribution to journal › Journal article › Research › peer-review

Importance of integrating mixoplankton into marine ecosystem policy and management—Examples from the Marine Strategy Framework Directive

Anschütz, A., Maselli, Maira, Traboni, C., Boon, A. R. & Stolte, W., 2024, (E-pub ahead of print) In: Integrated Environmental Assessment and Management.

Research output: Contribution to journal › Journal article › Research › peer-review

PPARγ antagonists induce aromatase transcription in adipose tissue cultures

Ardenkjær-Skinnerup, J., Saar, Daniel, Petersen, Patricia Stephanie S, Pedersen, M., Svingen, T., Kragelund, Birthe Brandt, Hadrup, N., Ravn-Haren, G., Emanuelli, Brice, Brown, K. A. & Vogel, U., 2024, In: Biochemical Pharmacology. 222, 13 p., 116095.

Research output: Contribution to journal › Journal article › Research › peer-review

MacroLoops for microRNAs: shall we revise the maximum allowed size?

Arribas Hernandez, Laura, 2024, In: The Plant Cell. 36, 5, p. 1572-1573 2 p.

Research output: Contribution to journal › Letter › Research › peer-review

Seafloor primary production in a changing Arctic Ocean

Attard, K., Singh, R. K., Gattuso, J. P., Filbee-Dexter, K., Krause-Jensen, D., Kühl, Michael, Sejr, M. K., Archambault, P., Babin, M., Bélanger, S., Berg, P., Glud, R. N., Hancke, K., Jänicke, S., Qin, J., Rysgaard, S., Sørensen, E. B., Tachon, F., Wenzhöfer, F. & Ardyna, M., 2024, In: Proceedings of the National Academy of Sciences of the United States of America. 121, 11, 10 p., e2303366121.

Research output: Contribution to journal › Journal article › Research › peer-review

Spatially resolved analysis of microenvironmental gradient impact on cancer cell phenotypes

Auxillos, Jamie Yam, Crouigneau, R., Li, Y. F., Dai, Yifan, Stigliani, Arnaud, Tavernaro, I., Resch-Genger, U., Sandelin, Albin Gustav, Marie, R. & Pedersen, Stine Helene Falsig, 2024, In: Science Advances. 10, 18, 17 p., eadn3448.

Research output: Contribution to journal › Journal article › Research › peer-review

Evidence of steady-state fibroblast subtypes in the normal human breast as cells-of-origin for perturbed-state fibroblasts in breast cancer

Bagger, M. M., Sjölund, J., Kim, Jiyoung, Kohler, Katharina Theresa, Villadsen, René, Jafari Kermani, Abbas, Kassem, Moustapha Saad El-Deen, Pietras, K., Rønnov-Jessen, Lone & Petersen, Ole William, 2024, In: Breast Cancer Research. 26, 1, 19 p., 11.

Research output: Contribution to journal › Journal article › Research › peer-review

African bushpigs exhibit porous species boundaries and appeared in Madagascar concurrently with human arrival

Balboa, R. F., Bertola, L. D., Brüniche-Olsen, A., Rasmussen, M. S., Liu, X., Besnard, G., Salmona, J., Santander, C. G., He, S., Zinner, D., Pedrono, M., Muwanika, V., Masembe, C., Schubert, M., Kuja, J., Quinn, L., Garcia-Erill, G., Stæger, F. F., Rakotoarivony, R., Henrique, M. & 14 others, Lin, Long, Wang, X., Heaton, M. P., Smith, T. P. L., Hanghøj, Kristian Ebbesen, Sinding, Mikkel Holger Strander, Atickem, A., Chikhi, L., Roos, C., Gaubert, P., Siegismund, Hans Redlef, Moltke, Ida, Albrechtsen, Anders & Heller, Rasmus, 2024, In: Nature Communications. 15, 1, 15 p., 172.

Research output: Contribution to journal › Journal article › Research › peer-review

Short- and long-term plant and microbial uptake of ¹⁵N-labelled urea in a mesic tundra heath, West Greenland

Barthelemy, H., Nobel, L. A., Stark, S., Väisänen, M., Olofsson, J. & Michelsen, Anders, 2024, In: Polar Biology. 47, p. 1-15 15 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Long-term conservation tillage with reduced nitrogen fertilization intensity can improve winter wheat health via positive plant–microorganism feedback in the rhizosphere

Behr, J. H., Kuhl-Nagel, T., Sommermann, L., Moradtalab, N., Chowdhury, S. P., Schloter, M., Windisch, S., Schellenberg, I., Maccario, Lorrie, Sørensen, Søren Johannes, Rothballer, M., Geistlinger, J., Smalla, K., Ludewig, U., Neumann, G., Grosch, R. & Babin, D., 2024, In: FEMS Microbiology Ecology. 100, 2, 18 p., fiae003.

Research output: Contribution to journal › Journal article › Research › peer-review

Phytoplankton community changes in relation to nutrient fluxes along a quasi-stationary front

Bendtsen, Jørgen, Daugbjerg, Niels, Jensen, R. S., dbt998, dbt998, Nielsen, M. H., Hansen, J. L. S. & Richardson, Katherine, 2024, In: Marine Ecology - Progress Series. 727, p. 67-80 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

The Arctic Plant Aboveground Biomass Synthesis Dataset

Berner, L. T., Orndahl, K. M., Rose, M., Tamstorf, M., Arndal, M. F., Alexander, H. D., Humphreys, E. R., Loranty, M. M., Ludwig, S. M., Nyman, J., Juutinen, S., Aurela, M., Happonen, K., Mikola, J., Mack, M. C., Vankoughnett, M. R., Iversen, C. M., Salmon, V. G., Yang, D., Kumar, J. & 34 others, Grogan, P., Danby, R. K., Scott, N. A., Olofsson, J., Siewert, M. B., Deschamps, L., Lévesque, E., Maire, V., Morneault, A., Gauthier, G., Gignac, C., Boudreau, S., Gaspard, A., Kholodov, A., Bret-Harte, M. S., Greaves, H. E., Walker, D., Gregory, F. M., Michelsen, Anders, Kumpula, T., Villoslada, M., Ylänne, H., Luoto, M., Virtanen, T., Forbes, B. C., Hölzel, N., Epstein, H., Heim, R. J., Bunn, A., Holmes, R. M., Hung, J. K. Y., Natali, S. M., Virkkala, A. M. & Goetz, S. J., 2024, In: Scientific Data. 11, 1, 13 p., 305.

Research output: Contribution to journal › Journal article › Research › peer-review

A pragmatic approach for integrating molecular tools into biodiversity conservation

Bertola, L. D., Brüniche-Olsen, A., Kershaw, F., Russo, I. R. M., MacDonald, A. J., Sunnucks, P., Bruford, M. W., Cadena, C. D., Ewart, K. M., de Bruyn, M., Eldridge, M. D. B., Frankham, R., Guayasamin, J. M., Grueber, C. E., Hoareau, T. B., Hoban, S., Hohenlohe, P. A., Hunter, M. E., Kotze, A., Kuja, J. & 21 others, Lacy, R. C., Laikre, L., Lo, N., Meek, M. H., Mergeay, J., Mittan-Moreau, C., Neaves, L. E., O'Brien, D., Ochieng, J. W., Ogden, R., Orozco-terWengel, P., Páez-Vacas, M., Pierson, J., Ralls, K., Shaw, R. E., Sogbohossou, E. A., Stow, A., Steeves, T., Vernesi, C., Watsa, M. & Segelbacher, G., 2024, In: Conservation Science and Practice. 6, 1, 15 p., e13053.

Research output: Contribution to journal › Journal article › Research › peer-review

Giraffe lineages are shaped by major ancient admixture events

Bertola, L. D., Quinn, L., Hanghøj, K., Garcia-Erill, G., Rasmussen, M. S., Balboa, R. F., Meisner, J., Bøggild, T., Wang, X., Lin, L., Nursyifa, C., Liu, X., Li, Z., Chege, M., Moodley, Y., Brüniche-Olsen, A., Kuja, J., Schubert, M., Agaba, M., Santander, C. G. & 7 others, Sinding, Mikkel Holger Strander, Muwanika, V., Masembe, C., Siegismund, Hans Redlef, Moltke, Ida, Albrechtsen, Anders & Heller, Rasmus, 2024, In: Current Biology. 34, 7, p. 1576-1586.e5 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Regulatory sequence-based discovery of anti-defense genes in archaeal viruses

Bhoobalan, Yuvaraj, Xu, Shuanshuan, Martinez Alvarez, Laura, Karamycheva, S., Makarova, K. S., Koonin, E. V. & Peng, Xu, 2024, In: Nature Communications. 15, 1, 13 p., 3699.

Research output: Contribution to journal › Journal article › Research › peer-review

New chemical and microbial perspectives on vitamin B1 and vitamer dynamics of a coastal system

Bittner, Meriel Jennifer, Bannon, C. C., Rowland, E., Sundh, J., Bertrand, E. M., Andersson, A. F., Paerl, R. W. & Riemann, Lasse, 2024, In: ISME communications. 4, 1, 16 p., ycad016.

Research output: Contribution to journal › Journal article › Research › peer-review

DNA binding redistributes activation domain ensemble and accessibility in pioneer factor Sox2

Bjarnason, S., McIvor, J. A. P., Prestel, Andreas, Demény, K. S., Bullerjahn, J. T., Kragelund, Birthe Brandt, Mercadante, D. & Heidarsson, P. O., 2024, In: Nature Communications. 15, 1, 16 p., 1445.

Research output: Contribution to journal › Journal article › Research › peer-review

Multiple mutations in the Nav1.4 sodium channel of New Guinean toxic birds provide auto‐resistance to deadly batrachotoxin

Bodawatta, Kasun Harshana, Hu, H., Schalk, F., Daniel, J. M., Maiah, G., Koane, B., Iova, B., Beemelmanns, C., Poulsen, Michael & Jønsson, Knud Andreas, 2024, In: Molecular Ecology. 33, 9, 14 p., e16878.

Research output: Contribution to journal › Journal article › Research › peer-review

Multiparameter Sensing of Oxygen and pH at Biological Interfaces via Hyperspectral Imaging of Luminescent Sensor Nanoparticles

Bognár, Z., Moßhammer, Maria, Brodersen, Kasper Elgetti, Bollati, Elena, Gyurcsányi, R. E. & Kühl, Michael, 2024, In: ACS Sensors. 9, 4, p. 1763-1774 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

High-resolution vision in pelagic polychaetes

Bok, M. J., Macali, A. & Garm, Anders Lydik, 2024, In: Current Biology. 34, 7, p. R269-R270 2 p.

Research output: Contribution to journal › Comment/debate › Research › peer-review

Editorial: Optics and ecophysiology of coral reef organisms: volume II

Bollati, Elena, Wangpraseurt, D., Larkum, A. W. D., Ferrier-Pagès, C. & Kühl, Michael, 2024, In: Frontiers in Marine Science. 11, 3 p., 1367849.

Research output: Contribution to journal › Editorial › Research › peer-review

Host-gut microbiota interactions shape parasite infections in farmed Atlantic salmon

Brealey, Jaelle, Kodama, M., Rasmussen, Jacob Agerbo, Hansen, Søren Blikdal, Santos-Bay, Luisa, Lecaudey, L. A., Hansen, M., Fjære, E., Myrmel, L. S., Madsen, L., Bernhard, A., Sveier, H., Kristiansen, Karsten, Gilbert, M Thomas P, Martin, M. D. & Limborg, Morten Tønsberg, 2024, In: mSystems. 9, 2, 29 p., e01043-23.

Research output: Contribution to journal › Journal article › Research › peer-review

Seagrass-mediated rhizosphere redox gradients are linked with ammonium accumulation driven by diazotrophs

Brodersen, Kasper Elgetti, Moßhammer, Maria, Bittner, Meriel Jennifer, Hallstrøm, S., Santner, J., Riemann, Lasse & Kühl, Michael, 2024, In: Microbiology Spectrum. 12, 4, 20 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Field collections and environmental DNA surveys reveal topographic complexity of coral reefs as a predictor of cryptobenthic biodiversity across small spatial scales

Brodnicke, O. B., Jensen, M. R., Thomsen, P. F., Brorly, T., Andersen, B. L., Knudsen, Steen Wilhelm, Præbel, K., Brandl, S. J., Sweet, M. J., Møller, Peter Rask & Worsaae, Katrine, 2024, In: Environmental DNA. 6, 3, 15 p., e545.

Research output: Contribution to journal › Journal article › Research › peer-review

Hymenopteran parasitoids reared from European gall midges (Diptera, Cecidomyiidae)

Bruun, Hans Henrik, Haarder, S., Buhl, P. N. & Askew, R. R., 2024, In: Biodiversity Data Journal. 12, 34 p., e118487.

Research output: Contribution to journal › Journal article › Research › peer-review

Protein kinase C-inhibition reduces critical weight loss and improves functional outcome after experimental subarachnoid haemorrhage

Bömers, J. P., Holm, A., Kazantzi, Spyridoula, Edvinsson, L., Mathiesen, Tiit Illimar & Haanes, Kristian Agmund, 2024, In: Journal of Stroke and Cerebrovascular Diseases. 33, 7, 11 p., 107728.

Research output: Contribution to journal › Journal article › Research › peer-review

Targeting synthesis of the Chromosome Replication Initiator Protein DnaA by antisense PNA-peptide conjugates in Escherichia coli

Campion, C., Charbon, Godefroid, Nielsen, Peter E. & Løbner-Olesen, Anders, 2024, In: Frontiers in Antibiotics. 3, 10 p., 1384390.

Research output: Contribution to journal › Journal article › Research › peer-review

PICH deficiency limits the progression of MYC-induced B-cell lymphoma

Castejón-Griñán, M., Albers, E., Simón-Carrasco, L., Aguilera, P., Sbroggio, M., Pladevall Morera, David, Ingham, Andreas, Lim, Ernest Wee Kiat, Guillen-Benitez, A., Pietrini, E., Lisby, Michael, Hickson, Ian David & Lopez-Contreras, Andres, 2024, In: Blood Cancer Journal. 14, 1, 15 p., 16.

Research output: Contribution to journal › Journal article › Research › peer-review

The nightscape of the Arctic winter shapes the diving behavior of a marine predator

Chambault, P., Teilmann, J., Tervo, O., Sinding, Mikkel Holger Strander & Heide-Jørgensen, M. P., 2024, In: Scientific Reports. 14, 1, 9 p., 3908.

Research output: Contribution to journal › Journal article › Research › peer-review

Effect of ecological and anthropogenic factors on grouping patterns in African lions across Kenya

Chege, M., Bertola, Laura, De Snoo, G. R., Ngene, S., Otieno, T., Amoke, I., van 't Zelfde, M., Dolrenry, S., Broekhuis, F., Tamis, W., De Iongh, H. H. & Elliot, N. B., 2024, In: Ecology and Evolution. 14, 2, 14 p., e10982.

Research output: Contribution to journal › Journal article › Research › peer-review

Genetic diversity of lion populations in Kenya: Evaluating past management practices and recommendations for future conservation actions

Chege, M., Sewalt, B., Lesilau, F., de Snoo, G., Patterson, B. D., Kariuki, L., Otiende, M., Omondi, P., de Iongh, H., Vrieling, K. & Bertola, Laura, 2024, In: Evolutionary Applications. 17, 3, 14 p., e13676.

Research output: Contribution to journal › Journal article › Research › peer-review

A new temperature-photoperiod coupled phenology module in LPJ-GUESS model v4.1: Optimizing estimation of terrestrial carbon and water processes

Chen, S., Fu, Y. H., Li, M., Jia, Z., Cui, Y. & Tang, Jing, 2024, In: Geoscientific Model Development. 17, 7, p. 2509-2523 15 p.

Research output: Contribution to journal › Journal article › Research › peer-review

International consensus guidelines for the definition, detection, and interpretation of autophagy-dependent ferroptosis

Chen, X., Tsvetkov, A. S., Shen, H., Isidoro, C., Ktistakis, N. T., Linkermann, A., Koopman, W. J. H., Simon, H., Galluzzi, L., Luo, S., Xu, D., Gu, W., Peulen, O., Cai, Q., Rubinsztein, D. C., Chi, J., Zhang, D. D., Li, C., Toyokuni, S., Liu, J. & 49 others, Roh, J., Dai, E., Juhasz, G., Liu, W., Zhang, J., Yang, M., Liu, J., Zhu, L., Zou, W., Piacentini, M., Ding, W., Yue, Z., Xie, Y., Petersen, Morten, Gewirtz, D. A., Mandell, M. A., Chu, C. T., Sinha, D., Eftekharpour, E., Zhivotovsky, B., Besteiro, S., Gabrilovich, D. I., Kim, D., Kagan, V. E., Bayir, H., Chen, G., Ayton, S., Lünemann, J. D., Komatsu, M., Krautwald, S., Loos, B., Baehrecke, E. H., Wang, J., Lane, J. D., Sadoshima, J., Yang, W. S., Gao, M., Münz, C., Thumm, M., Kampmann, M., Yu, D., Lipinski, M. M., Jones, J. W., Jiang, X., Zeh, H. J., Kang, R., Klionsky, D. J., Kroemer, G. & Tang, D., 2024, (E-pub ahead of print) In: Autophagy. p. 1-34

Research output: Contribution to journal › Journal article › Research › peer-review

Functionalized graphene-oxide grids enable high-resolution cryo-EM structures of the SNF2h-nucleosome complex without crosslinking

Chio, U. S., Palovcak, E., Smith, A. A. A., Autzen, Henriette Elisabeth, Muñoz, E. N., Yu, Z., Wang, F., Agard, D. A., Armache, J. P., Narlikar, G. J. & Cheng, Y., 2024, In: Nature Communications. 15, 1, 12 p., 2225.

Research output: Contribution to journal › Journal article › Research › peer-review

Drosophila activins adapt gut size to food intake and promote regenerative growth

Christensen, Christian Fokdal, Laurichesse, Quentin Charles B, Loudhaief, Rihab, Colombani, Julien & Andersen, Ditte Skovaa, 2024, In: Nature Communications. 15, 1, 12 p., 273.

Research output: Contribution to journal › Journal article › Research › peer-review

Global N₂O emissions from our planet: Which fluxes are affected by man, and can we reduce these?

Christensen, Søren & Rousk, Kathrin, 2024, In: iScience. 27, 2, 10 p., 109042.

Research output: Contribution to journal › Review › Research › peer-review

A mutational atlas for Parkin proteostasis

Clausen, L., Voutsinos, Vasileios, Cagiada, Matteo, Johansson, Kristoffer Enøe, Grønbæk-Thygesen, Martin, Nariya, S., Powell, R. L., Have, M. K. N., Østergaard, Vibe Hallundbæk, Stein, Amelie, Fowler, D. M., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2024, In: Nature Communications. 15, 1, 17 p., 1541.

Research output: Contribution to journal › Journal article › Research › peer-review

PRKN-linked familial Parkinson’s disease: cellular and molecular mechanisms of disease-linked variants

Clausen, L., Okarmus, J., Voutsinos, Vasileios, Meyer, M., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2024, In: Cellular and Molecular Life Sciences. 81, 1, 17 p., 223.

Research output: Contribution to journal › Review › Research › peer-review

Coexisting with carnivores: insights into local attitudes toward African wild dogs (Lycaon pictus) in the Maasai Mara, Kenya

Cornu, L., Broekhuis, F., Kavwele, C. M., Mogensen, N., Sakat, D. & Briefer, Elodie, 2024, (E-pub ahead of print) In: Human Dimensions of Wildlife.

Research output: Contribution to journal › Comment/debate › Research › peer-review

A scoping review of the use of bioacoustics to assess various components of farm animal welfare

Coutant, M., Villain, Avelyne Sylvie Marie & Briefer, Elodie, 2024, In: Applied Animal Behaviour Science. 275, 14 p., 106286.

Research output: Contribution to journal › Journal article › Research › peer-review

GMMA Can Stabilize Proteins Across Different Functional Constraints

Daffern, N., Johansson, Kristoffer Enøe, Baumer, Z. T., Robertson, N. R., Woojuh, J., Bedewitz, M. A., Davis, Z., Wheeldon, I., Cutler, S. R., Lindorff-Larsen, Kresten & Whitehead, T. A., 2024, In: Journal of Molecular Biology. 436, 11, 15 p., 168586.

Research output: Contribution to journal › Journal article › Research › peer-review

Plocamiomonas psychrophila gen. et sp. nov. (Pelagophyceae, Heterokontophyta), an Arctic marine nanoflagellate characterized by microscopy, pigments and molecular phylogeny.

Daugbjerg, Niels, Lara, C. H., Frøsig Gai, F. & Lovejoy, C., 2024, (Accepted/In press) In: European Journal of Phycology.

Research output: Contribution to journal › Journal article › Research › peer-review

Circumtropical distribution and cryptic species of the meiofaunal enteropneust Meioglossus (Harrimaniidae, Hemichordata)

Defourneaux, Eloïse Pauline Sarah, Herranz, Maria, Armenteros, M., Sørensen, Martin Vinther, Norenburg, J. L., Park, T. & Worsaae, Katrine, 2024, In: Scientific Reports. 14, 1, 20 p., 9296.

Research output: Contribution to journal › Journal article › Research › peer-review

Contrasting effects of increasing dissolved iron on photosynthesis and O₂  availability in the gastric cavity of two Mediterranean corals

Dellisanti, Walter, Zhang, Qingfeng, Ferrier-pagès, C. & Kühl, Michael, 2024, In: PeerJ. 12, 24 p., e17259.

Research output: Contribution to journal › Journal article › Research › peer-review

Intra-colony spatial variance of oxyregulation and hypoxic thresholds for key Acropora coral species

Dilernia, N. J., Woodcock, S., Camp, E. F., Hughes, D. J., Kühl, Michael & Suggett, D. J., 2024, In: Ecology and Evolution. 14, 3, 16 p., e11100.

Research output: Contribution to journal › Journal article › Research › peer-review

Recommendations for Bioinformatic Tools in lncRNA Research

Distefano, R., Ilieva, M., Rennie, Sarah & Uchida, S., 2024, In: Current Bioinformatics. 19, 1, p. 14-20 7 p.

Research output: Contribution to journal › Review › Research › peer-review

The role of neighbour proximity and context on meerkat close call acoustic structure

Driscoll, I., Briefer, Elodie & Manser, M. B., 2024, In: Animal Behaviour. 212, p. 113-126 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

ClockstaRX: Testing Molecular Clock Hypotheses With Genomic Data

Duchene, David, Duchêne, S., Stiller, Josefin, Heller, Rasmus & Ho, S. Y. W., 2024, In: Genome Biology and Evolution. 16, 4, 7 p., evae064.

Research output: Contribution to journal › Journal article › Research › peer-review

Structure of a metacommunity of urban bees: Species diversity and spatio-temporal modularity

Dupont, Y. L., Greve, M. B., Madsen, Henning Bang, Rasmussen, C., Timóteo, S. & Olesen, J. M., 2024, In: Basic and Applied Ecology. 77, p. 45-56 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

NBR1-mediated selective autophagy of ARF7 modulates root branching

Ebstrup, E., Ansbøl, J., Paez-Garcia, A., Culp, H., Chevalier, J., Clemmens, P., Coll, N. S., Moreno-Risueno, M. A. & Rodriguez, Eleazar, 2024, (E-pub ahead of print) In: EMBO Reports.

Research output: Contribution to journal › Journal article › Research › peer-review

A comparison of short-read, HiFi long-read, and hybrid strategies for genome-resolved metagenomics

Eisenhofer Philipona, Raphael A, Nesme, J., Santos-Bay, Luisa, Koziol, Adam Leslie, Sørensen, Søren Johannes, Alberdi, Antton & Aizpurua Arrieta, Ostaizka, 2024, In: Microbiology Spectrum. 12, 4, 14 p., e03590-23.

Research output: Contribution to journal › Journal article › Research › peer-review

Protocol for genomic recombineering in Yersinia ruckeri using CRISPR Cas12a coupled with the λ Red system

Ejaz, Rooshanie Nadia, Taylor, Nicholas M I & Rebrova, Eva Maria, 2024, In: STAR Protocols. 5, 2, 17 p., 103014.

Research output: Contribution to journal › Journal article › Research › peer-review

Cadmium accumulation in organisms from a spruce plantation amended with wood ash - an environmental risk?

Ekelund, Flemming, Cruz-Paredes, C., Jørgensen, Christian Hviid Friis, Vestergård, M., Rasmussen, K. R., Mortensen, Louise Hindborg, Kindtler, Nikolaj Lunding, Rønn, Regin, Christensen, Søren, Johansen, Jesper Liengaard & Kjøller, Rasmus, 2024, In: Trees, Forests and People. 15, 6 p., 100499.

Research output: Contribution to journal › Journal article › Research › peer-review

Identification of high-performing antibodies for the reliable detection of Tau proteoforms by Western blotting and immunohistochemistry

Ellis, M. J., Lekka, C., Holden, K. L., Tulmin, H., Seedat, F., O’Brien, D. P., Dhayal, S., Zeissler, M. L., Knudsen, Jakob Grunnet, Kessler, B. M., Morgan, N. G., Todd, J. A., Richardson, S. J. & Stefana, M. I., 2024, In: Acta Neuropathologica. 147, 1, 38 p., 87.

Research output: Contribution to journal › Journal article › Research › peer-review

Osmotic stress tolerance and transcriptomic response of Ramazzottius varieornatus (Eutardigrada: Ramazzottiidae) following tun formation

Emdee, N., Møbjerg, A., Grollmann, M. M. & Møbjerg, Nadja, 2024, In: Zoological Journal of the Linnean Society. 200, 1, p. 220-229 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Early life factors and oral microbial signatures define the risk of caries in a Swedish cohort of preschool children

Eriksen, C., Boustedt, K., Sonne, Si Brask, Dahlgren, J., Kristiansen, Karsten, Twetman, Svante, Brix, S. & Roswall, J., 2024, In: Scientific Reports. 14, 1, 13 p., 8463.

Research output: Contribution to journal › Journal article › Research › peer-review

The dynamics of phage predation on a microcolony

Eriksen, R. S., Larsen, Frej Andreas Nøhr, Svenningsen, Sine Lo, Sneppen, Kim & Mitarai, Namiko, 2024, In: Biophysical Journal. 123, 2, p. 147-156 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Recent progress in understanding the cellular and genetic basis of plant responses to low oxygen holds promise for developing flood-resilient crops

Fagerstedt, K. V., Pucciariello, C., Pedersen, Ole & Perata, P., 2024, In: Journal of Experimental Botany. 75, 5, p. 1217–1233 17 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Dissolved organic matter offsets the detrimental effects of climate change in the nitrogen‐fixing cyanobacterium Crocosphaera

Filella, A., Umbricht, J., Klett, A., Vogts, A., Vannier, T., Grosso, O., Voss, M., Riemann, Lasse & Benavides, M., 2024, In: Limnology and Oceanography Letters. 9, 3, p. 296-306 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Removal from the wild endangers the once widespread long-tailed macaque

Gamalo, L. E., Ilham, K., Jones-Engel, L., Gill, M., Sweet, R., Aldrich, B., Phiapalath, P., Van Bang, T., Ahmed, T., Kite, S., Paramasivam, S., Seiha, H., Zainol, M. Z., Nielsen, D. R. K., Ruppert, N., Fuentes, A. & Hansen, Malene Friis, 2024, In: American Journal of Primatology. 86, 3, 10 p., e23547.

Research output: Contribution to journal › Comment/debate › Research › peer-review

GLP-1 metabolite GLP-1(9–36) is a systemic inhibitor of mouse and human pancreatic islet glucagon secretion

Gandasi, N. R., Gao, R., Kothegala, L., Pearce, A., Santos, C., Acreman, S., Basco, D., Benrick, A., Chibalina, M. V., Clark, A., Guida, C., Harris, M., Johnson, P. R. V., Knudsen, J. G., Ma, J., Miranda, C., Shigeto, M., Tarasov, A. I., Yeung, H. Y., Thorens, B. & 5 others, Asterholm, I. W., Zhang, Q., Ramracheya, R., Ladds, G. & Rorsman, P., 2024, In: Diabetologia. 67, p. 528–546 19 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Eyes, Vision, and Bioluminescence in Deep-Sea Brisingid Sea Stars

Garm, Anders Lydik, Hamilton, O., Glenner, Henrik, Irwin, Alison Ruth & Mah, C., 2024, (E-pub ahead of print) In: Biological Bulletin.

Research output: Contribution to journal › Journal article › Research › peer-review

Characterizing glucokinase variant mechanisms using a multiplexed abundance assay

Gersing, S., Schulze, Thea Klarsø, Cagiada, Matteo, Stein, Amelie, Roth, F. P., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2024, In: Genome Biology. 25, 1, 22 p., 98.

Research output: Contribution to journal › Journal article › Research › peer-review

Imaging of extracellular and intracellular ATP in pancreatic beta cells reveals correlation between glucose metabolism and purinergic signalling

Ghiasi, S. M., Christensen, Nynne, Pedersen, Per Amstrup, Skovhøj, Emil Zeng & Novak, Ivana, 2024, In: Cellular Signalling. 117, 12 p., 111109.

Research output: Contribution to journal › Journal article › Research › peer-review

Destabilization and Degradation of a Disease-Linked PGM1 Protein Variant

Gouliaev, F., Jonsson, Nicolas, Gersing, S., Lisby, Michael, Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2024, (E-pub ahead of print) In: Biochemistry.

Research output: Contribution to journal › Journal article › Research › peer-review

Cellular and molecular mechanisms of aspartoacylase and its role in Canavan disease

Grønbæk-Thygesen, Martin & Hartmann-Petersen, Rasmus, 2024, In: Cell and Bioscience. 14, 1, 33 p., 45.

Research output: Contribution to journal › Review › Research › peer-review

Deep mutational scanning reveals a correlation between degradation and toxicity of thousands of aspartoacylase variants

Grønbæk-Thygesen, Martin, Voutsinos, Vasileios, Johansson, Kristoffer Enøe, Schulze, Thea Klarsø, Cagiada, Matteo, Pedersen, Line, Clausen, L., Nariya, S., Powell, R. L., Stein, Amelie, Fowler, D. M., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2024, In: Nature Communications. 15, 1, 18 p., 4026.

Research output: Contribution to journal › Journal article › Research › peer-review

Population size and social structure of lions in a west African protected area

Gueye, M., Pellaton, R., Van Cauteren, D., Mengual, L., Van Dongen, S., Leirs, H., Bertola, Laura, Faye, P. M., Diop, B., Diop, M. M., Kanté, A. & de Iongh, H., 2024, In: African Journal of Ecology. 62, 1, 11 p., e13226.

Research output: Contribution to journal › Journal article › Research › peer-review

Response of underwater photosynthesis to light, CO2, temperature, and submergence time of Taxodium distichum, a flood-tolerant tree

Guo, J., Xue, J., Yin, Y., Pedersen, Ole & Hua, J., 2024, In: Frontiers in Plant Science. 15, 13 p., 1355729.

Research output: Contribution to journal › Journal article › Research › peer-review

Diverse roles of the metal binding domains and transport mechanism of copper transporting P-type ATPases

Guo, Zongxin, Orädd, F., Bågenholm, Viktoria, Grønberg, C., Ma, J. F., Ott, P., Wang, Y., Andersson, M., Pedersen, Per Amstrup, Wang, Kaituo & Gourdon, Pontus Emanuel, 2024, In: Nature Communications. 15, 1, 16 p., 2690.

Research output: Contribution to journal › Journal article › Research › peer-review

BloodSpot 3.0: a database of gene and protein expression data in normal and malignant haematopoiesis

Gíslason, M. H., Demircan, G. S., Prachar, Marek, Furtwängler, Benjamin, Schwaller, J., Schoof, E., Porse, Bo Torben, Rapin, N. & Bagger, F., 2024, In: Nucleic acids symposium series. 52, D1, p. D1138–D1142 5 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Mechanisms of Systemic Osmoregulation in Insects

Halberg, Kenneth Veland & Denholm, B., 2024, In: Annual Review of Entomology. 69, p. 415-438 24 p.

Research output: Contribution to journal › Review › Research › peer-review

Plant trait and vegetation data along a 1314 m elevation gradient with fire history in Puna grasslands, Perú

Halbritter, A. H., Vandvik, V., Cotner, S. H., Farfan-Rios, W., Maitner, B. S., Michaletz, S. T., Oliveras Menor, I., Telford, R. J., Ccahuana, A., Cruz, R., Sallo-Bravo, J., Santos-Andrade, P. E., Vilca-Bustamante, L. L., Castorena, M., Chacón-Labella, J., Christiansen, C. T., Duran, S. M., Egelkraut, D. D., Gya, R., Haugum, S. V. & 42 others, Seltzer, L., Silman, M. R., Strydom, T., Spiegel, M. P., Barros, A., Birkeli, K., Boakye, M., Chiappero, F., Chmurzynski, A., Garen, J. C., Gaudard, J., Gauthier, T. L. J., Geange, S. R., Gonzales, F. N., Henn, J. J., Hošková, K., Isaksen, A., Jessup, L. H., Johnson, W., Kusch, E., Lepley, K., Lift, M., Martyn, T. E., Muñoz Mazon, M., Middleton, S. L., Quinteros Casaverde, N. L., Navarro, J., Zepeda, V., Ocampo-Zuleta, K., Palomino-Cardenas, A. C., Pastor Ploskonka, S., Pierfederici, M. E., Pinelli, V., Rickenback, J., Roos, R. E., Rui, H. S., Sanchez Diaz, E., Sánchez-Tapia, A., Smith, A., Urquiaga-Flores, E., von Oppen, J. & Enquist, B. J., 2024, In: Scientific Data. 11, 1, 18 p., 225.

Research output: Contribution to journal › Journal article › Research › peer-review

Carving out a Glycoside Hydrolase Active Site for Incorporation into a New Protein Scaffold Using Deep Network Hallucination

Hansen, A. L., Theisen, Frederik Friis, Crehuet, R., Marcos, E., Aghajari, N. & Willemoës, Martin, 2024, In: ACS Synthetic Biology. 13, 3, p. 862-875 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Editorial overview: New and revitalized old targets in metabolic disease

Hansen, Jacob B. & Novak, Ivana, 2024, In: Current Opinion in Pharmacology. 75, 3 p., 102434.

Research output: Contribution to journal › Editorial › Research › peer-review

High N6-methyladenosine-activated TCEAL8 mRNA is a novel pancreatic cancer marker

Hara, T., Meng, S., Sato, H., Tatekawa, S., Sasaki, K., Takeda, Y., Tsuji, Y., Arao, Y., Ofusa, K., Kitagawa, T., Yamada, D., Takahashi, H., Kobayashi, S., Motooka, D., Suzuki, Y., Rennie, S., Uchida, S., Mori, M., Ogawa, K., Doki, Y. & 2 others, Eguchi, H. & Ishii, H., 2024, (E-pub ahead of print) In: Cancer Science.

Research output: Contribution to journal › Journal article › Research › peer-review

The tick Ixodes scapularis has five different GPCRs specifically activated by ACP (adipokinetic hormone/corazonin-related peptide)

Hauser, Frank, Stebegg, M., Al-Ribaty, T., Petersen, L. B., Møller, M., Drag, Markus Hodal, Sigurdsson, H. H., Vilhelm, M. J., Thygesen, G. & Grimmelikhuijzen, Cornelis (Cok), 2024, In: Biochemical and Biophysical Research Communications. 717, 7 p., 149992.

Research output: Contribution to journal › Journal article › Research › peer-review

Obituary: Claus Nielsen (March 28th, 1938–January 18th, 2024)

Hay-Schmidt, Anders & Høeg, Jens Thorvald, 2024, In: Zoomorphology. 143, p. 1-3

Research output: Contribution to journal › Journal article › Research

Crop management strategies shape the shared temporal dynamics of soil food web structure and functioning

Hedde, M., Coudrain, V., Maron, P. A., Chauvat, M., Cheviron, N., Ekelund, Flemming, Mougin, C., Mary, B., Recous, S., Villenave, C. & Thébault, E., 2024, In: Agriculture, Ecosystems and Environment. 370, 11 p., 109058.

Research output: Contribution to journal › Journal article › Research › peer-review

Antibiotic implant irrigation and deep infection: A retrospective study of 1508 patients undergoing breast reconstruction with implants

Hemmingsen, Mathilde Nejrup, Bennedsen, A. K., Kullab, R. B., Weltz, T. K., Ørholt, M., Norlin, C. B., Kalstrup, J., Bredgaard, R., Sørensen, Søren Johannes, Bjarnsholt, Thomas, Hølmich, Lisbet Rosenkrantz, Damsgaard, T. E., Vester-Glowinski, Peter Viktor & Herly, Mikkel, 2024, (E-pub ahead of print) In: Plastic and Reconstructive Surgery. 26 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Long-term changes in the daytime growing season carbon dioxide exchange following increased temperature and snow cover in arctic tundra

Hermesdorf, Lena, Liu, Yijing, Michelsen, Anders, Westergaard-Nielsen, Andreas, Mortensen, Louise Hindborg, Jepsen, M. S., Sigsgaard, Charlotte & Elberling, Bo, 2024, In: Global Change Biology. 30, 1, 15 p., e17087.

Research output: Contribution to journal › Journal article › Research › peer-review

The molecular basis for cellular function of intrinsically disordered protein regions

Holehouse, A. S. & Kragelund, Birthe Brandt, 2024, In: Nature Reviews Molecular Cell Biology. 25, p. 187–211 25 p.

Research output: Contribution to journal › Review › Research › peer-review

Positive selection has shaped the evolution of Argentine ant immune genes both in native and introduced supercolonies

Holmberg, I., Tolonen, L., Paviala, J., Pedersen, Jes Søe, Helanterä, H. & Viljakainen, L., 2024, In: Journal of Evolutionary Biology. 37, 2, p. 131–140 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

The extrachromosomal circular DNA atlas of aged and young mouse brains

Hong, X., Li, J., Han, Peng, Li, S., Yu, J., Zhang, H., Li, J., Dang, Y. & Xiang, X., 2024, In: Scientific Data. 11, 1, 8 p., 318.

Research output: Contribution to journal › Journal article › Research › peer-review

Comparison of the DNBSEQ platform and Illumina HiSeq 2000 for bacterial genome assembly

Hu, T., Chen, J., Lin, X., He, W., Liang, H., Wang, M., Li, W., Wu, Z., Han, Mo, Jin, X., Kristiansen, Karsten, Xiao, L. & Zou, Y., 2024, In: Scientific Reports. 14, 1, 9 p., 1292.

Research output: Contribution to journal › Journal article › Research › peer-review

DiscoTope-3.0: improved B-cell epitope prediction using inverse folding latent representations

Høie, M. H., Gade, F. S., Johansen, J., Würtzen, C., Winther, Ole, Nielsen, M. & Marcatili, P., 2024, In: Frontiers in Immunology. 15, 12 p., 1322712.

Research output: Contribution to journal › Journal article › Research › peer-review

Regional impacts of warming on biodiversity and biomass in high latitude stream ecosystems across the Northern Hemisphere

Jackson, M. C., Friberg, N., Moliner Cachazo, L., Clark, D. R., Mutinova, P. T., O’Gorman, E. J., Kordas, R. L., Gallo, B., Pichler, D. E., Bespalaya, Y., Aksenova, O. V., Milner, A., Brooks, S. J., Dunn, N., Lee, K. W. K., Ólafsson, J. S., Gíslason, G. M., Millan, L., Bell, T., Dumbrell, A. J. & 1 others, Woodward, G., 2024, In: Communications Biology . 7, 1, 8 p., 316.

Research output: Contribution to journal › Journal article › Research › peer-review

MYC activity at enhancers drives prognostic transcriptional programs through an epigenetic switch

Jakobsen, S. T., Jensen, R. A. M., Madsen, M. S., Ravnsborg, T., Vaagenso, C. S., Siersbæk, M. S., Einarsson, H., Andersson, Robin, Jensen, O. N. & Siersbæk, R., 2024, In: Nature Genetics. 56, p. 663–674 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Long-read genome sequencing provides novel insights into the harmful algal bloom species Prymnesium parvum

Jian, J., Wu, Z., Silva-núñez, A., Li, X., Zheng, X., Luo, B., Liu, Y., Fang, X., Workman, C. T., Larsen, T. O., Hansen, Per Juel & Sonnenschein, E. C., 2024, In: Science of the Total Environment. 908, 168042.

Research output: Contribution to journal › Journal article › Research › peer-review

Translational frontiers: insight from lymphatics in skin regeneration

Jiang, Y. & Perez-Moreno, Mirna, 2024, In: Frontiers in Physiology. 15, 8 p., 1347558.

Research output: Contribution to journal › Review › Research › peer-review

Flooding stress and responses to hypoxia in plants

Jimenez Serna, Juan de la Cruz, Mustroph, A., Pedersen, Ole, Weits, D. A. & Schmidt-schippers, R., 2024, In: Functional Plant Biology. 51, 4, 5 p., FP24061.

Research output: Contribution to journal › Journal article › Research › peer-review

Overcoming constraints to measuring O2 diffusivity and consumption of intact roots

Jimenez Serna, Juan de la Cruz, Armstrong, W., Colmer, T. D. & Pedersen, Ole, 2024, In: Plant Physiology. 195, 1, p. 283-286 4 p., kiae046.

Research output: Contribution to journal › Comment/debate › Research › peer-review

Chromatin image-driven modelling

Kadlof, M., Banecki, K., Chilinski, Mateusz & Plewczynski, D., 2024, In: Methods. 226, p. 54-60 7 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Optimizing cleaning strategies for biofouling in reverse osmosis membrane systems: A comparative study using a self-formed instrument

Khani, M., Hansen, Mads Frederik, Rasekh, B., Nosrati, M., Burmølle, Mette, Ghasemipanah, K. & Zamir, S. M., 2024, In: Journal of Industrial and Engineering Chemistry. 132, p. 448-460 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Fertilizer regime and cultivar affect barley growth and rhizobiome composition

Kindtler, Nikolaj Lunding, Sheikh, Sanea, Richardy, J., Krogh, E., Maccario, Lorrie, Vestergård, M., Rodrigues da Fonseca, Rute Andreia, Ekelund, Flemming & Laursen, Kristian Holst, 2024, In: Applied Soil Ecology. 198, 13 p., 105384.

Research output: Contribution to journal › Journal article › Research › peer-review

Microbial community composition unaffected by mycorrhizal plant removal in sub-arctic tundra

Kirchhoff, L., Gavazov, K., Blume-Werry, G., Krab, E. J., Lett, Signe, Pedersen, Emily Pickering, Peter, M., Pfister, S., Väisänen, M. & Monteux, S., 2024, In: Fungal Ecology. 69, 11 p., 101342.

Research output: Contribution to journal › Journal article › Research › peer-review

Cross-feeding während der Ausbreitung auf Oberflächen

Kovács, Á. T. & Kiesewalter, Heiko T., 2024, In: BioSpektrum. 30, 1, p. 71 1 p.

Research output: Contribution to journal › Comment/debate › Research › peer-review

Dynamics of inflammation-associated plasma proteins following faecal microbiota transplantation in patients with psoriatic arthritis and healthy controls: exploratory findings from the FLORA trial [Inkl. Correction]

Kragsnaes, M. S., Jensen, J. R. B., Nilsson, A. C., Malik, M. I., Munk, H. L., Pedersen, J. K., Horn, H. C., Kruhøffer, M., Kristiansen, Karsten, Mullish, B. H., Marchesi, J. R., Kjeldsen, J., Röttger, R. & Ellingsen, T., 2024, In: RMD Open. 10, 1, 13 p., e003750.

Research output: Contribution to journal › Journal article › Research › peer-review

Næste niveau for dansk life science er verdenstoppen – vi har fagligheden til at være der: Danske forskere, talenter og virksomheder har både bredden og niveauet til at gøre København til det næste Kendall Square. Biologisk Institut står på spring i startklodserne.

Kroer, Niels, 12 Jan 2024, In: MedWatch.

Research output: Contribution to journal › Contribution to newspaper - Newspaper article › Communication

Identification of constrained sequence elements across 239 primate genomes

Kuderna, L. F. K., Ulirsch, J. C., Rashid, S., Ameen, M., Sundaram, L., Hickey, G., Cox, A. J., Gao, H., Kumar, A., Aguet, F., Christmas, M. J., Clawson, H., Haeussler, M., Janiak, M. C., Kuhlwilm, M., Orkin, J. D., Bataillon, T., Manu, S., Valenzuela, A., Bergman, J. & 72 others, Rouselle, M., Silva, F. E., Agueda, L., Blanc, J., Gut, M., de Vries, D., Goodhead, I., Harris, R. A., Raveendran, M., Jensen, A., Chuma, I. S., Horvath, J. E., Hvilsom, C., Juan, D., Frandsen, P., Schraiber, J. G., de Melo, F. R., Bertuol, F., Byrne, H., Sampaio, I., Farias, I., Valsecchi, J., Messias, M., da Silva, M. N. F., Trivedi, M., Rossi, R., Hrbek, T., Andriaholinirina, N., Rabarivola, C. J., Zaramody, A., Jolly, C. J., Phillips-Conroy, J., Wilkerson, G., Abee, C., Simmons, J. H., Fernandez-Duque, E., Kanthaswamy, S., Shiferaw, F., Wu, D., Zhou, L., Shao, Y., KU, thw266, Keyyu, J. D., Knauf, S., Le, M. D., Lizano, E., Merker, S., Navarro, A., Nadler, T., Khor, C. C., Lee, J., Tan, P., Lim, W. K., Kitchener, A. C., Zinner, D., Gut, I., Melin, A. D., Guschanski, K., Schierup, M. H., Beck, R. M. D., Karakikes, I., Wang, K. C., Umapathy, G., Roos, C., Boubli, J. P., Siepel, A., Kundaje, A., Paten, B., Lindblad-Toh, K., Rogers, J., Marques Bonet, T. & Farh, K. K. H., 2024, In: Nature. 625, p. 735–742 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

A druggable conformational switch in the c-MYC transactivation domain

Lama, D., Vosselman, T., Sahin, Cagla, Liaño-pons, J., Cerrato, C. P., Nilsson, L., Teilum, Kaare, Lane, D. P., Landreh, M. & Arsenian Henriksson, M., 2024, In: Nature Communications. 15, 1, 14 p., 1865.

Research output: Contribution to journal › Journal article › Research › peer-review

BeetleAtlas: An Ontogenetic and Tissue-specific Transcriptomic Atlas of the Red Flour Beetle Tribolium castaneum

Leader, D. P., Naseem, Muhammad Tayyib & Halberg, Kenneth Veland, 2024, (E-pub ahead of print) In: Journal of Molecular Biology. 168520.

Research output: Contribution to journal › Journal article › Research › peer-review

Genomic and functional diversity of cultivated Bifidobacterium from human gut microbiota

Li, W., Liang, H., He, W., Gao, X., Wu, Z., Hu, T., Lin, X., Wang, M., Zhong, Y., Zhang, H., Ge, L., Jin, X., Xiao, L. & Zou, Y., 2024, In: Heliyon. 10, 5, 14 p., e27270.

Research output: Contribution to journal › Journal article › Research › peer-review

Co-localization of antibiotic resistance genes is widespread in the infant gut microbiome and associates with an immature gut microbial composition

Li, Xuan Ji, Brejnrod, A., Trivedi, Urvish, Russel, J., Thorsen, J., Shah, S. A., Vestergaard, G. A., Rasmussen, Morten Arendt, Nesme, Joseph, Bisgaard, H., Stokholm, Jakob & Sørensen, Søren Johannes, 2024, In: Microbiome. 12, 1, 18 p., 87.

Research output: Contribution to journal › Journal article › Research › peer-review

vcfpp: a C++ API for rapid processing of the variant call format

Li, Z., 2024, In: Bioinformatics. 40, 2, 4 p., btae049.

Research output: Contribution to journal › Journal article › Research › peer-review

Flooding-adaptive root and shoot traits in rice

Lin, C., Zhang, Z., Shen, X., Liu, Dan & Pedersen, Ole, 2024, In: Functional Plant Biology. 51, 1, 13 p., FP23226.

Research output: Contribution to journal › Journal article › Research › peer-review

Investigating the role of TGF-β and BDNF in cancer-related depression: a primary cross-sectional study

Lin, J., Xiao, L., Nie, Xinchen, Wang, Z., Luo, Y., Zhang, L. & Liu, Yawei, 2024, In: Supportive Care in Cancer. 32, 6, 9 p., 365.

Research output: Contribution to journal › Journal article › Research › peer-review

Isolation of potentially novel species expands the genomic and functional diversity of Lachnospiraceae

Lin, X., Hu, T., Wu, Z., Li, L., Wang, Y., Wen, D., Liu, X., Li, W., Liang, H., Jin, X., Xu, X., Wang, J., Yang, H., Kristiansen, Karsten, Xiao, L. & Zou, Y., 2024, In: iMeta. 3, 2, 18 p., e174.

Research output: Contribution to journal › Journal article › Research › peer-review

Introgression and disruption of migration routes have shaped the genetic integrity of wildebeest populations

Liu, X., Lin, L., Sinding, M. H. S., Bertola, L. D., Hanghøj, K., Quinn, L., Garcia-Erill, G., Rasmussen, M. S., Schubert, M., Pečnerová, P., Balboa, R. F., Li, Z., Heaton, M. P., Smith, T. P. L., Pinto, R. R., Wang, X., Kuja, J., Brüniche-Olsen, A., Meisner, J., Santander, C. G. & 8 others, Ogutu, J. O., Masembe, C., Rodrigues da Fonseca, Rute Andreia, Muwanika, V., Siegismund, Hans Redlef, Albrechtsen, Anders, Moltke, Ida & Heller, Rasmus, 2024, In: Nature Communications. 15, 1, 16 p., 2921.

Research output: Contribution to journal › Journal article › Research › peer-review

Can large language models reason about medical questions?

Liévin, V., Hother, C. E., Motzfeldt, A. G. & Winther, Ole, 2024, In: Patterns. 5, 3, 12 p., 100943.

Research output: Contribution to journal › Journal article › Research › peer-review

Transmembrane transporter proteins: Capturing transport in motion

Loland, Claus Juul, Wellendorph, Petrine, Pedersen, Stine Helene Falsig & Gether, Ulrik, 2024, In: Basic and Clinical Pharmacology and Toxicology. 134, 2, p. 203-205 3 p.

Research output: Contribution to journal › Editorial › Research › peer-review

Nitrogen uptake in lentil cultivar mixtures is not predictable from pure stands performance but is correlated with agronomic parameters and experimental conditions

Lorenzetti, E., Carlesi, S., Michelsen, Anders & Bàrberi, P., 2024, In: Agriculture and Food Security. 13, 1, 13 p., 11.

Research output: Contribution to journal › Journal article › Research › peer-review

DNA metabarcoding reveals the impact of Cu²⁺ on soil cercozoan diversity

Lourenço, L., Ellegaard Bager, S., Ng, D. Y. K., Sheikh, Sanea, Kindtler, Nikolaj Lunding, Nielsen, Ida Broman, Frøslev, Tobias Guldberg & Ekelund, Flemming, 2024, In: Protist. 175, 2, 9 p., 126016.

Research output: Contribution to journal › Journal article › Research › peer-review

Changes in composition and function of soil microbial communities during secondary succession in oldfields on the Tibetan Plateau

Ma, Hui, Yan, X., Gao, E., Qiu, Y., Sun, X., Wang, S., Wang, Y., Bruun, Hans Henrik, He, Z., Shi, X. & Zhao, Z., 2024, In: Plant and Soil. 495, p. 429–443 15 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Phytoremediation in the Guadiamar Green Corridor (SW Spain): Trace element uptake by plants and effects on soil fungal diversity

Madejón, P., Domínguez, M. T., Gil-Martínez, M. & Madejón, E., 2024, In: Advances in Botanical Research. 109, p. 255-294 40 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Environmental drivers of increased ecosystem respiration in a warming tundra

Maes, S. L., Dietrich, J., Midolo, G., Schwieger, S., Kummu, M., Vandvik, V., Aerts, R., Althuizen, I. H. J., Biasi, C., Björk, R. G., Böhner, H., Carbognani, M., Chiari, G., Christiansen, C. T., Clemmensen, K. E., Cooper, E. J., Cornelissen, J. H. C., Elberling, B., Faubert, P., Fetcher, N. & 56 others, Forte, T. G. W., Gaudard, J., Gavazov, K., Guan, Z., Guðmundsson, J., Gya, R., Hallin, S., Hansen, B. B., Haugum, S. V., He, J. S., Hicks Pries, C., Hovenden, M. J., Jalava, M., Jónsdóttir, I. S., Juhanson, J., Jung, J. Y., Kaarlejärvi, E., Kwon, M. J., Lamprecht, R. E., Le Moullec, M., Lee, H., Marushchak, M. E., Michelsen, Anders, Munir, T. M., Myrsky, E. M., Nielsen, C. S., Nyberg, M., Olofsson, J., Óskarsson, H., Parker, T. C., Pedersen, Emily Pickering, Petit Bon, M., Petraglia, A., Raundrup, K., Ravn, N. M. R., Rinnan, Riikka, Rodenhizer, H., Ryde, Ingvild, Schmidt, N. M., Schuur, E. A. G., Sjögersten, S., Stark, S., Strack, M., Tang, J., Tolvanen, A., Töpper, J. P., Väisänen, M. K., van Logtestijn, R. S. P., Voigt, C., Walz, J., Weedon, J. T., Yang, Y., Ylänne, H., Björkman, M. P., Sarneel, J. M. & Dorrepaal, E., 2024, In: Nature. 629, 8010, p. 105-113 9 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Human P2X7 receptor variants Gly150Arg and Arg276His polymorphisms have differential effects on risk association and cellular functions in pancreatic cancer

Magni, Lara, Yu, Haoran, Christensen, Nynne, Poulsen, Mette Homann, Frueh, A., Deshar, Ganga, Johansen, A. Z., Johansen, Julia Sidenius, Pless, Stephan, Jørgensen, Niklas Rye & Novak, Ivana, 2024, In: Cancer Cell International. 24, 1, 16 p., 148.

Research output: Contribution to journal › Journal article › Research › peer-review

Impact of salinity and temperature on the vital rates of co-occurring Calanus glacialis and C. finmarchicus from West Greenland

Makri, M., Hansen, Per Juel & Gissel Nielsen, T., 2024, In: Marine Ecology - Progress Series. 729, p. 47-62 16 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Carbon and nitrogen uptake through photosynthesis and feeding by photosymbiotic Acantharia

Mansour, J. S., Hansen, Per Juel, Leroux, C. & Not, F., 2024, (E-pub ahead of print) In: Open Research Europe.

Research output: Contribution to journal › Journal article › Research › peer-review

Inhibitors of bacterial immune systems: discovery, mechanisms and applications

Mayo-Muñoz, D., Pinilla Redondo, Rafael, Camara, Sarah, Birkholz, N. & Fineran, P. C., 2024, In: Nature Reviews Genetics. 25, 4, p. 237-254 18 p.

Research output: Contribution to journal › Review › Research › peer-review

Ancient and Modern Genomes Reveal Microsatellites Maintain a Dynamic Equilibrium Through Deep Time

McComish, B. J., Charleston, M. A., Parks, M., Baroni, C., Salvatore, M. C., Li, R., KU, thw266, Millar, C. D., Holland, B. R. & Lambert, D. M., 2024, In: Genome Biology and Evolution. 16, 3, 11 p., evae017.

Research output: Contribution to journal › Journal article › Research › peer-review

MCT4 and CD147 colocalize with MMP14 in invadopodia and support matrix degradation and invasion by breast cancer cells

Meng, Signe, Sørensen, E. E., Ponniah, M., Thorlacius-Ussing, J., Crouigneau, R., Larsen, T., Borre, M. T., Willumsen, N., Flinck, M. & Pedersen, Stine Helene Falsig, 2024, In: Journal of Cell Science. 137, 8, 15 p., jcs261608.

Research output: Contribution to journal › Journal article › Research › peer-review

A region of suppressed recombination misleads neoavian phylogenomics

Mirarab, S., Rivas-González, I., Feng, S., Stiller, Josefin, Fang, Q., Mai, U., Hickey, G., Chen, G., Brajuka, N., Fedrigo, O., Formenti, G., Wolf, J. B. W., Howe, K., Antunes, A., Schierup, M. H., Paten, B., Jarvis, E. D., KU, thw266 & Braun, E. L., 1 Apr 2024, In: Proceedings of the National Academy of Sciences. 121, 15, 10 p., e2319506121.

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The Advancement in Spring Vegetation Phenology in the Northern Hemisphere Will Reverse After 2060 Under Future Moderate Warming Scenarios

Mo, Y., Chen, S., Wu, Z., Tang, Jing & Fu, Y., 2024, In: Earth's Future. 12, 3, 17 p., e2023EF003788.

Research output: Contribution to journal › Journal article › Research › peer-review

Long-term phytoplankton dynamics in two High Arctic lakes (north-east Greenland)

Moedt, Sanne Mariël, Olrik, K., Schmidt, N. M., Jeppesen, E. & Christoffersen, Kirsten Seestern, 2024, In: Freshwater Biology. 69, 3, p. 403-415 13 p.

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FRETpredict: a Python package for FRET efficiency predictions using rotamer libraries

Montepietra, D., Tesei, Giulio, Martins, J. M., Kunze, M. B. A., Best, R. B. & Lindorff-Larsen, Kresten, 2024, In: Communications Biology . 7, 1, 10 p., 298.

Research output: Contribution to journal › Journal article › Research › peer-review

Controlling biases in targeted plant removal experiments

Monteux, S., Blume-Werry, G., Gavazov, K., Kirchhoff, L., Krab, E. J., Lett, Signe, Pedersen, Emily Pickering & Väisänen, M., 2024, In: New Phytologist. 242, 4, p. 1835-1845 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Impact of the early COVID-19 pandemic on adult mental health-related dispensed medications, hospitalizations and specialist outpatient visits in Norway and Sweden: Interrupted time series analysis

Moreno-Martos, D., Zhao, J., Li, H., Nyberg, F., Bjørndal, L. D., Hajiebrahimi, M., Wettermark, B., Aakjær, Mia, Andersen, Morten, Sessa, Maurizio, Lupattelli, A., Nordeng, H. & Morales, D. R., 2024, (E-pub ahead of print) In: British Journal of Clinical Pharmacology.

Research output: Contribution to journal › Journal article › Research › peer-review

Intake of different types of seafood and meat and risk of type 2 diabetes in women: a prospective study supported by a dietary intervention in mice

Myrmel, L. S., Øyen, J., Brantsæter, A. L., Fjære, E., Haugvaldstad, K., Birkeland, K. I., Nygård, O., Kristiansen, Karsten, Egeland, G. M. & Madsen, L., 2024, In: Scientific Reports. 14, 1, 14 p., 8950.

Research output: Contribution to journal › Journal article › Research › peer-review

Net O₂ exchange rates under dark and light conditions across different stem compartments

Natale, S., Peralta Ogorek, Lucas León, Caracciolo, L., Morosinotto, T., van Amerongen, H., Casolo, V., Pedersen, Ole & Nardini, A., 2024, (E-pub ahead of print) In: New Phytologist.

Research output: Contribution to journal › Journal article › Research › peer-review

Acclimation of subarctic vegetation to warming and increased cloudiness

Ndah, F. A., Maljanen, M., Kasurinen, A., Rinnan, Riikka, Michelsen, Anders, Kotilainen, T. & Kivimäenpää, M., 2024, In: Plant-Environment Interactions. 5, 1, 16 p., e10130.

Research output: Contribution to journal › Journal article › Research › peer-review