Publications from

Total publications from unit:

2024

1.

 Frederik Friis Theisen, Andreas Prestel, Steffie Elkjær, Yannick H.A. Leurs, Nicholas Morffy, Lucia C. Strader, Charlotte O’Shea, Kaare Teilum, Birthe B. Kragelund and Karen Skriver. (2024) Molecular switching in transcription through splicing and proline-isomerization regulates stress responses in plants Nature Communications 15(1).

2023

2.

 Jazba Anum, Charlotte O’Shea, Karen Skriver, Muhammad Saeed, Muhammad Zeeshan Hyder, Sumaira Farrakh and Tayyaba Yasmin. (2023) The promoters of OsGLP genes exhibited differentially methylated sites under drought and salt stress in rice cultivars Euphytica 219(4).

3.

 Karen Skriver, Frederik Friis Theisen and Birthe B. Kragelund. (2023) Conformational entropy in molecular recognition of intrinsically disordered proteins Current Opinion in Structural Biology 83.

4.

 Karen Skriver, Signe A. Sjørup, Annette E. Langkilde, Evanthia Balouka, Casper S. Christensen, Kathrine Carbel, Jens N. V. Decker, David N. Essenbæk, Justus F. Gräf, Camilla H. Jessen, Peter Kristensen, Christoffer Merrild, Tobias S. Mortensen, Isabella F. Nalepa, Bjørn W. Nordsteen, Sophie K. Svoren, Matthijs van Hall, Jan Weicher, Malene L. Wind, Danping Zhang, Daniel Saar, Helle Blæsild, Martin Stahlhut, Kim V. Andersen, Robert Dagil, Bente Vestergaard, Marie L. Ryberg and Birthe B. Kragelund. (2023) Intrinsically Disordered Proteins as an Instrument for Research-Integrating Teaching The Biophysicist 4(2):1-7.

5.

 Steffie Elkjær, Amanda D. Due, Lise F. Christensen, Frederik F. Theisen, Lasse Staby, Birthe B. Kragelund and Karen Skriver. (2023) Evolutionary fine-tuning of residual helix structure in disordered proteins manifests in complex structure and lifetime Communications Biology 6.

2022

6.

 Estella A. Newcombe, Elise Delaforge, Rasmus Hartmann-Petersen, Karen Skriver and Birthe B. Kragelund. (2022) How phosphorylation impacts intrinsically disordered proteins and their function Essays in Biochemistry 66(7):901-913.

7.

 Frederik Friis Theisen, Edoardo Salladini, Rikke Davidsen, Christina Jo Rasmussen, Lasse Staby, Birthe B. Kragelund and Karen Skriver. (2022) aa-hub coregulator structure and flexibility determine transcription factor binding and selection in regulatory interactomes Journal of Biological Chemistry 298(6).

8.

 Jazba Anum, Charlotte O'Shea, M. Zeeshan Hyder, Sumaira Farrukh, Karen Skriver, Saad Imran Malik and Tayyaba Yasmin. (2022) Germin like protein genes exhibit modular expression during salt and drought stress in elite rice cultivars Molecular Biology Reports 49(1):293-302.

2021

9.

 Estella A. Newcombe, Catarina B. Fernandes, Jeppe E. Lundsgaard, Inna Brakti, Kresten Lindorff-Larsen, Annette E. Langkilde, Karen Skriver and Birthe B. Kragelund. (2021) Insight into Calcium-Binding Motifs of Intrinsically Disordered Proteins Biomolecules 11(8).

10.

 Frederik Friis Theisen, Lasse Staby, Frederik Grønbæk Tidemand, Charlotte O'Shea, Andreas Prestel, Martin Willemoës, Birthe B. Kragelund and Karen Skriver. (2021) Quantification of Conformational Entropy Unravels Effect of Disordered Flanking Region in Coupled Folding and Binding Journal of the American Chemical Society 143(36):14540-14550.

11.

 Katrine Bugge, Lasse Staby, Edoardo Salladini, Rasmus G. Falbe-Hansen, Birthe B. Kragelund and Karen Skriver. (2021) aa-Hub domains and intrinsically disordered proteins: a decisive combo Journal of Biological Chemistry 296.

12.

 Lasse Staby, Amanda D. Due, Micha Ben Achim Kunze, Maria Louise Mønster Jørgensen, Karen Skriver and Birthe B. Kragelund. (2021) Flanking Disorder of the Folded aa-Hub Domain from Radical Induced Cell Death1 Affects Transcription Factor Binding by Ensemble Redistribution: Flanking disorder tunes the RCD1-RST ensemble Journal of Molecular Biology 433(24).

13.

 Lasse Staby, Katherine R. Kemplen, Amelie Stein, Michael Ploug, Jane Clarke, Karen Skriver, Pétur O. Heidarsson and Birthe B. Kragelund. (2021) Disorder in a two-domain neuronal Ca2+-binding protein regulates domain stability and dynamics using ligand mimicry Cellular and molecular life sciences : CMLS 78:2263-2278.

14.

 Lasse Staby, Katrine Bugge, Rasmus Greve Falbe-Hansen, Edoardo Salladini, Karen Skriver and Birthe B. Kragelund. (2021) Connecting the aa-hubs: same fold, disordered ligands, new functions Cell Communication and Signaling 19.

2020

15.

 Birthe B. Kragelund, Andreas Prestel, Nanna Wickmann, Joao Martins, Wouter Boomsma, Lasse Staby, Ruth Hendus-Altenburger and Karen Skriver. (2020) Context Matters in Disorder Based Protein Communication Biophysical Journal 118:491A.

16.

 Edoardo Salladini, Maria L.M. Jørgensen, Frederik F. Theisen and Karen Skriver. (2020) Intrinsic Disorder in Plant Transcription Factor Systems: Functional Implications International Journal of Molecular Sciences (Online) 21(24).

17.

 Katrine Bugge, Inna Brakti, Catarina B. Fernandes, Jesper E. Dreier, Jeppe E. Lundsgaard, Johan G. Olsen, Karen Skriver and Birthe B. Kragelund. (2020) Interactions by Disorder - A Matter of Context Frontiers in Molecular Biosciences 7.

18.

 Sara Klingenberg, Maria L. M. Jørgensen, Gert Dandanell, Karen Skriver, Aske Mottelson and Guido Makransky. (2020) Investigating the effect of teaching as a generative learning strategy when learning through desktop and immersive VR: A media and methods experiment British Journal of Educational Technology 51(6):2115-2138.

2019

19.

 Murillo L. Martins, Alexander B. Dinitzen, Eugene Mamontov, Svemir Rudic, Jose E. M. Pereira, Rasmus Hartmann-Petersen, Kenneth W. Herwig and Heloisa N. Bordallo. (2019) Water dynamics in MCF-7 breast cancer cells: a neutron scattering descriptive study Scientific Reports 9.

20.

 Lise Friis Christensen, Lasse Staby, Katrine Bugge, Charlotte O'Shea, Birthe B. Kragelund and Karen Skriver. (2019) Evolutionary conservation of the intrinsic disorder-based Radical-Induced Cell Death1 hub interactome Scientific Reports 9.

2018

21.

 Manoj K. Singh, Sandra Richter, Hauke Beckmann, Marika Kientz, York-Dieter Stierhof, Nadine Anders, Florian Fäßler, Michael Nielsen, Christian Knöll, Alexis Thomann, Mirita Franz-Wachtel, Boris Macek, Karen Skriver, Peter Pimpl and Gerd Jürgens. (2018) A single class of ARF GTPase activated by several pathway-specific ARF-GEFs regulates essential membrane traffic in Arabidopsis PLOS Genetics 14(11):1-36.

22.

 Katrine Østergaard Bugge, Lasse Staby, Katherine Rosemary Kemplen, Charlotte O'Shea, Sidsel Krogh Bendsen, Mikael Kryger Jensen, Johan Gotthardt Olsen, Karen Skriver and Birthe Brandt Kragelund. (2018) Structure of radical-induced cell death1 hub domain reveals a common aa-scaffold for disorder in transcriptional networks Structure 26(5):734-746.

23.

 Maher M. Kassem, Lars B. Christoffersen, Andrea Cavalli and Kresten Lindorff-Larsen. (2018) Enhancing coevolution-based contact prediction by imposing structural self-consistency of the contacts Scientific Reports 8.

24.

 Maria Louise Mønster Jørgensen, Babatunde Ekundayo, Mikel Zaratiegui, Karen Skriver, Genevieve Thon and Thomas Schalch. (2018) Structure of the replication regulator Sap1 reveals functionally important interfaces Scientific Reports 8.

2017

25.

 Farah Deeba, Tasawar Sultana, Tariq Mahmood, Charlotte O'Shea, Karen Skriver and S. M. Saqlan Naqvi. (2017) Involvement of WRKY, MYB and DOF DNA-binding proteins in interaction with a rice germin-like protein gene promoter Acta Physiologiae Plantarum 39.

26.

 Lasse Staby, Charlotte O'Shea, Martin Willemoës, Frederik Theisen, Birthe Brandt Kragelund and Karen Skriver. (2017) Eukaryotic transcription factors: paradigms of protein intrinsic disorder Biochemical Journal 474(15):2509-2532.

27.

 Charlotte O'Shea, Lasse Staby, Sidsel Krogh Bendsen, Frederik Grønbæk Tidemand, Andreas Redsted, Martin Willemoës, Birthe Brandt Kragelund and Karen Skriver. (2017) Structures and short linear motif of disordered transcription factor regions provide clues to the interactome of the cellular hub radical-induced cell death1 Journal of Biological Chemistry 292(2):512-527.

2016

28.

 Ditte H. Welner, Farah Deeba, Leila Lo Leggio and Karen Skriver. (2016) NAC transcription factors: from structure to function in stress-associated networks Plant transcription factors - evolutionary, structural and functional aspects:199-212.

29.

 Michael W. Christiansen, Colette Matthewman, Dagmara Agata Podzimska-Sroka, Charlotte O'Shea, Søren Lindemose, Niels Erik Møllegaard, Inger Bæksted Holme, Kim Hebelstrup, Karen Skriver and Per L. Gregersen. (2016) Barley plants over-expressing the NAC transcription factor gene HvNAC005 show stunting and delay in development combined with early senescence Journal of Experimental Botany 67(17):5259-5273.

30.

 Michael May, Karen Skriver and Gert Dandanell. (2016) Towards a cognitive semiotics of science: the case of physical chemistry Meaning, mind and communication - explorations in cognitive semiotics:101-126.

2015

31.

 Karen Skriver, Gert Dandanell, Jakob Hjorth von Stemann and Michael May. (2015) Udfordringer ved undervisning i enzymer: Bidrag fra det virtuelle laboratorium MONA - Matematik- og Naturfagsdidaktik 2015(1):49-65.

32.

 Charlotte O'Shea, Mikael Kryger Jensen, Emil G.P. Stender, Birthe Brandt Kragelund, Martin Willemoës and Karen Skriver. (2015) Protein intrinsic disorder in Arabidopsis NAC transcription factors: transcriptional activation by ANAC013 and ANAC046 and their interactions with RCD1 Biochemical Journal 465(2):281-294.

33.

 Dagmara Podzimska-Sroka, Charlotte O'Shea, Per L. Gregersen and Karen Skriver. (2015) NAC transcription factors in senescence: from molecular structure to function in crops Plants 4(3):412-448.

34.

 Emil G. Stender, Charlotte O'Shea and Karen Skriver. (2015) Subgroup-specific intrinsic disorder profiles of arabidopsis NAC transcription factors: identification of functional hotspots Plant Signalling & Behavior 10(6).

2014

35.

 Michael Krogh Jensen and Karen Skriver. (2014) NAC transcription factor gene regulatory and protein-protein interaction networks in plant stress responses and senescence I U B M B Life 66(3):156-166.

36.

 Søren Lindemose, Michael K. Jensen, Jan Van de Velde, Charlotte O'Shea, Ken S. Heyndrickx, Christopher Workman, Klaas Vandepoele, Karen Skriver and Federico De Masi. (2014) A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana Nucleic Acids Research 42(12):7681-7693.

2013

37.

 Michael Krogh Jensen, Søren Lindemose, Federico de Masi, Julia J. Reimer, Michael Nielsen, Venura Perera, Chris T. Workman, Franziska Turck, Murray R. Grant, John Mundy, Morten Petersen and Karen Skriver. (2013) ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana FEBS Open Bio 3:321-327.

38.

 Naoyuki Umemoto, Takayuki Ohnuma, Mamiko Mizuhara, Hirokazu Sato, Karen Skriver and Tamo Fukamizo. (2013) Introduction of a tryptophan side chain into subsite +1 enhances transglycosylation activity of a GH-18 chitinase from Arabidopsis thaliana, AtChiC Glycobiology 23(1):81-90.

39.

 Søren Lindemose, Charlotte O'Shea, Michael Krogh Jensen and Karen Skriver. (2013) Structure, function and networks of transcription factors involved in abiotic stress responses International Journal of Molecular Sciences (Online) 14(3):5842-78.

2012

40.

 Birthe Brandt Kragelund, Michael Krogh Jensen and Karen Skriver. (2012) Order by disorder in plant signaling Trends in Plant Science 17(11):625-632.

41.

 Ditte Hededam Welner, Søren Lindemose, J. Günter Grossmann, Niels Erik Møllegaard, Addie Nina Olsen, Charlotte Helgstrand, Karen Skriver and Leila Lo Leggio. (2012) DNA binding by the plant-specific NAC transcription factors in crystal and solution: a firm link to WRKY and GCM transcription factors Biochemical Journal 444:395-404.

2011

42.

 T. Letzel, E. Sahmel-Schneide, K. Skriver, T. Ohnuma and T. Fukamizo. (2011) Chitinase-catalyzed hydrolysis of 4-nitrophenyl penta-N-acetyl-B-chitopentaoside as determined by real-time ESI-MS: The 4-nitrophenyl moiety of the substrate interacts with the enzyme binding site Carbohydrate Research 346(6):863-866.

43.

 Takayuki Ohnuma, Tomoyuki Numata, Takuo Osawa, Mamiko Mizuhara, Outi Lampela, André H Juffer, Karen Skriver and Tamo Fukamizo. (2011) A class V chitinase from Arabidopsis thaliana: gene responses, enzymatic properties, and crystallographic analysis Planta 234(1):123-37.

44.

 Trine Kjaersgaard, Michael K Jensen, Michael W Christiansen, Per L. Gregersen, Birthe B Kragelund and Karen Skriver. (2011) Senescence-associated barley NAC (NAM, ATAF1,2, CUC) transcription factor interacts with radical-induced cell death 1 through a disordered regulatory domain Journal of Biological Chemistry 286(41):35418-29.

2010

45.

 Michael K Jensen, Trine Kjaersgaard, Michael M. Nielsen, Pernille Galberg, Klaus Petersen, Charlotte O'Shea and Karen Skriver. (2010) The Arabidopsis thaliana NAC transcription factor family: structure-function relationships and determinants of ANAC019 stress signalling Biochemical Journal 426(2):183-96.

46.

 Michael Krogh Jensen, Trine Kjærsgaard, Klaus Petersen and Karen Skriver. (2010) NAC genes: Time-specific regulators of hormonal signaling in Arabidopsis Plant Signalling & Behavior 5(7).

2009

47.

 Nicole Dennhart, Linda M M Weigang, Maho Fujiwara, Tamo Fukamizo, Karen Skriver and Thomas Letzel. (2009) 26kDa endochitinase from barley seeds: real-time monitoring of the enzymatic reaction and substrate binding experiments using electrospray ionization mass spectrometry Journal of Biotechnology 143(4):274-83.

48.

 Tamo Fukamizo, Ryoh Miyake, Atsushi Tamura, Tasayuki Ohnuma, Karen Skriver, Niko Pursiainen and Andre Juffer. (2009) A flexible loop controlling the enzymatic activity and specificity in a glycosyl hydrolase family 19 endochitinase from barley seeds Biochimica et Biophysica Acta - Proteins and Proteomics 1794(8):1159-1167.

2008

49.

 Jakob Wiborg, Charlotte O'Shea and Karen Skriver. (2008) Biochemical function of typical and variant Arabidopsis thaliana U-box E3 ubiquitin-protein ligases Biochemical Journal 413(3):447-457.

50.

 Nadine Anders, Michael M. Nielsen, Jutta Keicher, York-Dieter Stierhof, Masahiko Furutani, Gerd Jürgens, Masao Tasaka and Karen Skriver. (2008) Membrane association of the Arabidopsis ARF exchange factor GNOM involves interaction of conserved domains Plant Cell 20(1):142-51.

2006

51.

 Michael Nielsen, Jacob Albrethsen, Flemming Hofmann Larsen and K. Skriver. (2006) The Arabidopsis ADP-ribosylation factor (ARF) and ARF-like (ARL) system and its regulation by BIG2, a large ARF-GEF Plant Science 171(6):707-717.

2005

52.

 Addie Nina Olsen, Heidi Asschenfeldt Ernst, Leila Lo Leggio and Karen Skriver. (2005) DNA-binding specificity and molecular functions of NAC transcription factors Plant Science 169(4):785-797.

53.

 Tsuneo Ohnishi, André H Juffer, Masahiro Tamoi, Karen Skriver and Tamo Fukamizo. (2005) 26 kDa endochitinase from barley seeds: an interaction of the ionizable side chains essential for catalysis Journal of Biochemistry 138(5):553-62.

2004

54.

 Addie Nina Olsen, Heidi Asschenfeldt Ernst, Leila Lo Leggio, Eva Helena Johansson, Sine Larsen and Karen Skriver. (2004) Preliminary crystallographic analysis of the NAC domain of ANAC, a member of the plant-specific NAC transcription factor family Acta Crystallographica. Section D: Biological Crystallography 60:112-115.

55.

 Heidi Asschenfeldt Ernst, Addie Nina Olsen, Karen Skriver, Sine Larsen and Leila Lo Leggio. (2004) Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors EMBO Reports 5:297-303.

56.

 Pernille Andersen, Birthe B Kragelund, Addie N Olsen, Flemming H Larsen, Nam-Hai Chua, Flemming M Poulsen and Karen Skriver. (2004) Structure and biochemical function of a prototypical Arabidopsis U-box domain Journal of Biological Chemistry 279(38):40053-40061.

57.

 Tanja la Cour, Lars Kiemer, Anne Mølgaard, Ramneek Gupta, Karen Skriver and Søren Brunak. (2004) Analysis and prediction of leucine-rich nuclear export signals. Protein Engineering Design and Selection (Print Edition) 17(6):527-36.

2003

58.

 Addie Nina Olsen and K. Skriver. (2003) Ligand mimicry? Plant-parasitic nematode polypeptide with similarity to CLAVATA3 Trends in Plant Science(8):55-57.

59.

 Krestine Greve, Tanja La Cour Bravo Munoz, Michael Krogh Jensen, Flemming Martin Poulsen and K. Skriver. (2003) Interactions between plant RING-H2 and plant-specific NAC (NAM/ATAF1/2/CUC2) proteins: RING-H2 molecular specificity and cellular localization. Biochemical Journal(371):97-108.

60.

 Tanja La Cour Bravo Munoz, R. Gupta, K. Rapacki, K. Skriver, Flemming Martin Poulsen and S. Brunak. (2003) NESbase version 1.0: a database of nuclear export signals. Nucleic Acids Research(31):1393-1396.

2002

61.

 Addie Nina Olsen, John Mundy and Karen Skriver. (2002) Peptomics, identification of novel cationic Arabidopsis peptides with conserved sequence motifs. In Silico Biology 2(4):441-51.

2001

62.

 Rikke B. Jensen, Tanja la Cour, Jacob Albrethsen, Michael Marinus Nielsen and Karen Skriver. (2001) FYVE zinc-finger proteins in the plant model Arabidopsis thaliana: idenfication of Ptdins3P-binding residues by comparison of classic and variant FYVE dominans. Biochemical Journal(359):165-173.

2000

63.

 R B Jensen, K Lykke-Andersen, G I Frandsen, J Haseloff, H M Jespersen, J Mundy and K Skriver. (2000) Promiscuous and specific phospholipid binding by domains in ZAC, a membrane-associated Arabidopsis protein with an ARF GAP zinc finger and a C2 domain. Plant Molecular Biology 44(6):799-814.

1999

64.

 Rikke Jensen, Karen Skriver and Hans Jespersen. (1999) PMZ, a cDNA from Arabidopsis thaliana encoding a putative novel zinc finger motif with homologs in vertabrates and mammals Plant Molecular Biology 40:745.

1998

65.

 Dora Raventos Segura, K. Skriver, M. Schlein, K. Karnahl, S. Rogers, J.C. Rogers and John Williams Mundy. (1998) HRT, a novel transcriptional repressor from plants Journal of Biological Chemistry(273):23313-20.

1996

66.

 Gitte Frandsen, Frieder Muller-Uri, Michael Nielsen, John Mundy and Karen Skriver. (1996) Novel plant Ca2+-binding protein expressed in response to abscisic acid and osmotic stress The Journal of Biological Chemistry 271:343-348.

1994

67.

 Bushra Chaudhry, Frieder Müller-Uri, Verena Cameron-Mills, Simon Gough, David Simpson, K. Skriver and John Williams Mundy. (1994) The barley 60 kDa jasmonate-induced protein (JIP60) is a novel ribosome-inactivating protein Plant Journal:815-824.

68.

 Robert Leah, K. Skriver, Søren Knudsen, Jan Ruud-Hansen, Natasha V. Raikhei and John Williams Mundy. (1994) Identification of an enhancer/silencer sequence directing the aleurone-specific expression of a barley chitinase gene Plant Journal:579-589.

Last update: 17-11-2024 15:01:35. Next update: 17-11-2024 16:41:35