- 2009
- Published
Posttranscriptional crossregulation between Drosha and DGCR8
Han, J., Pedersen, Jakob Skou, Kwon, S. C., Belair, C. D., Kim, Y., Yeom, K., Yang, W., Haussler, D., Blelloch, R. & Kim, V. N., 2009, In: Cell. 136, 1, p. 75-84 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Autophagic components contribute to hypersensitive cell death in Arabidopsis
Hofius, D., Schultz-Larsen, T., Joensen, J., Tsitsigiannis, D. I., Petersen, N. H. T., Mattsson, O., Jørgensen, L. B., Jones, J. D. G., Mundy, J. & Petersen, Morten, 2009, In: Cell. 137, 4, p. 773-83 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Self-consuming innate immunity in Arabidopsis
Hofius, D., Mundy, J. & Petersen, Morten, 2009, In: Autophagy. 5, 8, p. 1206-7 1 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The genome of Burkholderia cenocepacia J2315, an epidemic pathogen of cystic fibrosis patients
Holden, M. T. G., Seth-Smith, H. M. B., Crossman, L. C., Sebaihia, M., Bentley, S. D., Cerdeño-Tárraga, A. M., Thomson, N. R., Bason, N., Quail, M. A., Sharp, S., Cherevach, I., Churcher, C., Goodhead, I., Hauser, H., Holroyd, N., Mungall, K., Scott, P., Walker, D., White, B., Rose, H. & 12 others, , 2009, In: Journal of Bacteriology. 191, 1, p. 261-77 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evolution of alternative splicing regulation: changes in predicted exonic splicing regulators are not associated with changes in alternative splicing levels in primates
Irimia, M., Rukov, J. L. & Roy, S. W., 2009, In: PLoS ONE. 4, 6, p. e5800Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Quantitative regulation of alternative splicing in evolution and development
Irimia, M., Rukov, J. L., Roy, S. W., Vinther, Jeppe & Garcia-Fernandez, J., 2009, In: BioEssays. 31, 1, p. 40-50 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Computational Analysis of MicroRNAs
Jacobsen, A. M. B., 2009, Museum Tusculanum.Research output: Book/Report › Ph.D. thesis › Research
- Published
The DNA damage response at eroded telomeres and tethering to the nuclear pore complex
Khadaroo, B., Teixeira, M. T., Luciano, P., Eckert-Boulet, N., Germann, S. M., Simon, M. N., Gallina, I., Abdallah, P., Gilson, E., Géli, V. & Lisby, Michael, 2009, In: Nature Cell Biology. 11, 8, p. 980-7 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The mosaic genome structure of the Wolbachia wRi strain infecting Drosophila simulans
Klasson, L., Westberg, J., Sapountzis, P., Näslund, K., Lutnaes, Y., Darby, A. C., Veneti, Z., Chen, L., Braig, H. R., Garrett, Roger Antony, Bourtzis, K. & Andersson, S. G. E., 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 14, p. 5725-5730Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fish protein hydrolysate elevates plasma bile acids and reduces visceral adipose tissue mass in rats
Liaset, B., Madsen, L., Hao, Q., Criales, G., Mellgren, G., Marschall, H., Hallenborg, P., Espe, M., Frøyland, L. & Kristiansen, Karsten, 2009, In: BBA General Subjects. 1791, 4, p. 254-62 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties
Lillestøl, R. K., Shah, S. A., Brügger, K., Redder, P., Phan, Safir Hien, Christiansen, Jan & Garrett, Roger Antony, 2009, In: Molecular Microbiology. 72, 1, p. 259-272Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Choreography of recombination proteins during the DNA damage response
Lisby, Michael & Rothstein, R., 2009, In: DNA Repair. 8, 9, p. 1068-76 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DNA damage response to eroded telomeres
Lisby, Michael & Géli, V., 2009, In: Cell Cycle. 8, 22, p. 3617-8 1 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification and characterization of barley RNA-directed RNA polymerases
Madsen, C. T., Stephens, J., Hornyik, C., Shaw, J., Collinge, David B., Lacomme, C. & Albrechtsen, M. T., 2009, In: BBA General Subjects. 1789, 5, p. 375-385 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Novel death regulators in plant immunity
Malinovsky, F. G., 2009, Biologisk Institut: Museum Tusculanum. 55 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Quantitative analysis of promoter architecture and gene regulation
Marstrand, T. T., 2009, Biologisk Institut: Museum Tusculanum. 33 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Haploinsufficiency of the retinoblastoma protein gene reduces diet-induced obesity, insulin resistance, and hepatosteatosis in mice
Mercader, J., Ribot, J., Murano, I., Feddersen, S., Cinti, S., Madsen, L., Kristiansen, Karsten, Bonet, M. L. & Palou, A., 2009, In: American Journal of Physiology: Endocrinology and Metabolism. 297, 1, p. E184-E193Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rad10 exhibits lesion-dependent genetic requirements for recruitment to DNA double-strand breaks in Saccharomyces cerevisiae
Moore, D. M., Karlin, J., González-Barrera, S., Mardiros, A., Lisby, Michael, Doughty, A., Gilley, J., Rothstein, R., Friedberg, E. C. & Fischhaber, P. L., 2009, In: Nucleic Acids Research. 37, 19, p. 6429-38 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rad52
Mortensen, U. H., Lisby, Michael & Rothstein, R., 2009, In: Current Biology. 19, 16, p. R676-7Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A conformational switch in the DiGIR1 ribozyme involved in release and folding of the downstream I-DirI mRNA
Nielsen, Henrik, Einvik, C., Lentz, T. E., Hedegaard, M. M. & Johansen, S. D., 2009, In: RNA: A publication of the RNA Society. 15, 5, p. 958-67 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A Flp-nick system to study repair of a single protein-bound nick in vivo
Nielsen, I., Bentsen, I. B., Lisby, Michael, Hansen, S., Mundbjerg, K., Andersen, A. H. & Bjergbaek, L., 2009, In: Nature Methods. 6, 10, p. 753-757 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genetic diversity and phylogenetic analysis of the attachment glycoprotein of phocine distemper viruses of the 2002 and 1988 epizootics
Nielsen, L., Arctander, P., Jensen, T. H., Dietz, Hans Henrik, Hammer, A. S., Banyard, A., Barrett, T. & Blixenkrone-Møller, M., 2009, In: Virus Research. 144, 1-2, p. 323-328 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification and analysis of miRNAs in human breast cancer and teratoma samples using deep sequencing
Nygaard, S., Jacobsen, A., Lindow, M., Eriksen, J., Balslev, E., Flyger, H., Tolstrup, N., Moller, S., Krogh, Anders & Litman, T., 2009, In: B M C Medical Genomics. 2, 1, p. 35Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Investigating non-coding genome content using high-throughput sequencing data
Nygaard, S., 2009, Biologisk Institut: Museum Tusculanum. 34 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Seawater-regulated genes for two-component systems and outer membrane proteins in myxococcus
Pan, H. W., Liu, H., Liu, T., Li, C. Y., Li, Z. F., Cai, K., Zhang, C. Y., ZHANG, YONG, Hu, W., Wu, Z. H. & Li, Y. Z., Apr 2009, In: Journal of Bacteriology. 191, 7, p. 2102-2111 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An upstream activation element exerting differential transcriptional activation on an archaeal promoter
Peng, N., Xia, Q., Chen, Z., Liang, Y. X. & She, Q., 2009, In: Molecular Microbiology. 74, 4, p. 928-939Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification of proteins interacting with Arabidopsis ACD11.
Petersen, N. H. T., Joensen, J., McKinney, L. V., Brodersen, P., Petersen, Morten, Hofius, D. & Mundy, J., 2009, In: Journal of Plant Physiology. 166, 6Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Conservation of the Type IV secretion system throughout Wolbachia evolution
Pichon, S., Bouchon, D., Cordaux, R., Chen, L., Garrett, Roger Antony & Grève, P., 2009, In: Biochemical and Biophysical Research Communications. 385, 4, p. 557-62 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles
Portales-Casamar, E., Thongjuea, S., Kwon, A. T., Arenillas, D., Zhao, X., Valen, E., Yusuf, D., Lenhard, B., Wasserman, W. W. & Sandelin, Albin Gustav, 2009, In: Nucleic Acids Research.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Polypeptides comprising an ice-binding activity
Ramløv, H., Wilkens, C. & Løbner-Olesen, Anders, 2009, Patent No. WO/2009/065415Research output: Patent
- Published
Response to Comment by Goldberg et al. on "DNA from Pre-Clovis Human Coprolites in Oregon, North America"
Rasmussen, M., Cummings, L., Gilbert, M Thomas P, Bryant, V., Smith, C., Jenkins, D. & Willerslev, Eske, 2009, In: Science. 325, p. 148 1 p.Research output: Contribution to journal › Comment/debate › Research
- Published
Four newly isolated fuselloviruses from extreme geothermal environments reveal unusual morphologies and a possible interviral recombination mechanism
Redder, P., Peng, Xu, Brügger, K., Shah, S. A., Roesch, F., Greve, B., She, Q., Schleper, C., Forterre, P., Garrett, Roger Antony & Prangishvili, D., 2009, In: Environmental Microbiology. 11, 11, p. 2849-62 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Distribution of CRISPR spacer matches in viruses and plasmids of crenarchaeal acidothermophiles and implications for their inhibitory mechanism
Shah, S. A., Hansen, Niels Richard & Garrett, Roger Antony, 2009, In: Biochemical Society Transactions. 37, Pt 1, p. 23-8 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genetic analyses in the hyperthermophilic archaeon Sulfolobus islandicus
She, Q., Zhang, C., Deng, L., Peng, N., Chen, Z. & Liang, Y. X., 2009, In: Biochemical Society Transactions. 37, Pt 1, p. 92-6 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
Suzuki, H., Forrest, A. R. R., van Nimwegen, E., Daub, C. O., Balwierz, P. J., Irvine, K. M., Lassmann, T., Ravasi, T., Hasegawa, Y., de Hoon, M. J. L., Katayama, S., Schroder, K., Carninci, P., Tomaru, Y., Kanamori-Katayama, M., Kubosaki, A., Akalin, A., Ando, Y., Arner, E., Asada, M. & 31 others, , 2009, In: Nature Genetics. 41, 5, p. 553-62 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Computational methods for exploration and prediction of regulatory elements in RNA Polymerase II promoters
Tang, M. E., 2009, Biologisk Institut: Museum Tusculanum. 127 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Autoimmunity in Plants: Guards with a License to Kill
Thorgrimsen, S. P., 2009, Copenhagen University. Department of Biology: Museum Tusculanum. 91 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Discovery of regulatory elements is improved by a discriminatory approach
Valen, E., Sandelin, Albin Gustav, Winther, Ole & Krogh, Anders, 2009, In: PLoS Computational Biology. 5, 11, p. e1000562Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE
Valen, E., Pascarella, G., Chalk, A., Maeda, N., Kojima, M., Kawazu, C., Murata, M., Nishiyori, H., Lazarevic, D., Motti, D., Marstrand, T. T., Tang, M-H. E., Zhao, X., Krogh, A., Winther, O., Arakawa, T., Kawai, J., Wells, C., Daub, C., Harbers, M. & 4 others, , 2009, In: Genome Research. 19, 2, p. 255-65 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The life-cycle of ATV and other crenarchaeal viruses
Vestergaard, G. A., 2009, Biologisk Institut: Museum Tusculanum. 91 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Where sociality and relatedness diverge: the genetic basis for hierarchical social organization in African elephants
Wittemyer, G., Okello, J. B. A., Rasmussen, H. B., Arctander, P., Nyakaana, S., Douglas-Hamilton, I. & Siegismund, Hans Redlef, 2009, In: PROCEEDINGS OF THE ROYAL SOCIETY OF LONDON SERIES B-CONTAINING PAPERS OF A BIOLOGICAL CHARACTER. 276, 1672, p. 3513-3521Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DISPARE: DIScriminative PAttern REfinement for Position Weight Matrices
da Piedade, I., Tang, M. E. & Elemento, O., 2009, In: BMC Bioinformatics. 10, 388, 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
High-throughput screening of Erwinia chrysanthemi pectin methylesterase variants using carbohydrate microarrays
Øbro, J., Sørensen, I., Derkx, P., Madsen, C. T., Drews, M., Willer, M., Mikkelsen, J. D. & Willats, W. G. T., 2009, In: Proteomics - Practical Proteomics. 9, 7, p. 1861-1868Research output: Contribution to journal › Journal article › Research › peer-review
- 2010
- Published
Erratum: A two-step model for senescence triggered by a single critically short telomere: (Nature Cell Biol. (2009) 11 (988-993))
Abdallah, P., Luciano, P., Runge, K. W., Lisby, Michael, Géli, V., Gilson, E. & Teixeira, M. T., May 2010, In: Nature Cell Biology. 12, 5, p. 520 1 p.Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
Rad52 SUMOylation affects the efficiency of the DNA repair: [Inkl. Corrigendum]
Altmannova, V., Eckert-Boulet, N., Arneric, M., Kolesar, P., Chaloupkova, R., Damborsky, J., Sung, P., Zhao, X., Lisby, Michael & Krejci, L., 2010, In: Nucleic Acids Research. 38, 14, p. 4708-4721 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The transcription elongation factor Bur1-Bur2 interacts with replication protein A and maintains genome stability during replication stress
Clausing, E., Mayer, A., Chanarat, S., Müller, B., Germann, S. M., Cramer, P., Lisby, Michael & Strässer, K., 31 Dec 2010, In: Journal of Biological Chemistry. 285, 53, p. 41665-41674 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Transcription termination in the plasmid/virus hybrid pSSVx from Sulfolobus islandicus
Contursi, P., Cannio, R. & She, Q., 1 Sep 2010, In: Extremophiles. 14, 5, p. 453-63 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Regulation of homologous recombination at telomeres in budding yeast
Eckert-Boulet, N. & Lisby, Michael, 10 Sep 2010, In: F E B S Letters. 584, 17, p. 3696-3702 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
RNAi and heterochromatin repress centromeric meiotic recombination
Ellermeier, C., Higuchi, E. C., Phadnis, N., Holm, L., Geelhood, J. L., Thon, Genevieve & Smith, G. R., 11 May 2010, In: Proceedings of the National Academy of Sciences USA (PNAS). 107, 19, p. 8701-5 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metagenomic analyses of novel viruses and plasmids from a cultured environmental sample of hyperthermophilic neutrophiles
Garrett, Roger Antony, Prangishvili, D., Shah, S. A., Reuter, M., Stetter, K. O. & Peng, Xu, 1 Nov 2010, In: Environmental Microbiology. 12, 11, p. 2918-30 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Receptor-like kinase complexes in plant innate immunity
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MAP kinase cascades in Arabidopsis innate immunity
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relax: the analysis of biomolecular kinetics and thermodynamics using NMR relaxation dispersion data
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Bacterial chromosomes and their replication
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
PICH deficiency limits the progression of MYC-induced B-cell lymphoma
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Going through changes - the role of autophagy during reprogramming and differentiation
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