Functional Genomics

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  1. Published

    Rad52 and Rad59 exhibit both overlapping and distinct functions

    Feng, Q., Düring, L., de Mayolo, A. A., Buchhorn, G. L., Lisby, Michael, Erdeniz, N., Mortensen, U. H. & Rothstein, R., 2007, In: DNA Repair. 6, 1, p. 27-37 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    A transcriptional factor B paralog functions as an activator to DNA damage-responsive expression in archaea

    Feng, X., Sun, M., Han, W., Liang, Y. X. & She, Q., 2018, In: Nucleic Acids Research. 46, 14, p. 7085-7096

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Identification of the archaeal regulatory network in DNA damage response

    Feng, X., 2018, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  4. Published

    Discovery and Characterization of a Novel Thermostable β-Amino Acid Transaminase from a Meiothermus Strain Isolated in an Icelandic Hot Spring

    Ferrandi, E. E., Bassanini, I., Sechi, B., Vanoni, M., Tessaro, D., Gudbergsdóttir, S. R., Riva, S., Peng, Xu & Monti, D., 2020, In: Biotechnology Journal. 15, 11, 9 p., 2000125.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Discovery and characterization of thermophilic limonene-1,2-epoxide hydrolases from hot spring metagenomic libraries

    Ferrandi, E. E., Sayer, C., Isupov, M. N., Annovazzi, C., Marchesi, C., Iacobone, G., Peng, Xu, Bonch-Osmolovskaya, E., Wohlgemuth, R., Littlechild, J. A. & Monti, D., 2015, In: F E B S Journal. 282, 15, p. 2879-2894 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Novel thermostable amine transferases from hot spring metagenomes

    Ferrandi, E. E., Previdi, A., Bassanini, I., Riva, S., Peng, Xu & Monti, D., Jun 2017, In: Applied Microbiology and Biotechnology. 101, 12, p. 4963-4979 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Short-term kinetics of rRNA degradation in Escherichia coli upon starvation for carbon, amino acid, or phosphate

    Fessler, M., Gummesson, Bertil, Charbon, Godefroid, Svenningsen, Sine Lo & Sørensen, Michael Askvad, 2020, In: Molecular Microbiology. 113, 5, p. 951-963 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Nucleotide diversity and linkage disequilibrium of nine genes with putative effects on flowering time in perennial ryegrass (Lolium perenne L.)

    Fiil, A., Lenk, I., Petersen, K., Jensen, C. S., Nielsen, K. K., Schejbel, B., Andersen, J. R. & Lübberstedt, T., 2011, In: Plant Science. 180, 2, p. 228-237 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Gene regulation by MAP kinase cascades

    Fiil, Berthe Katrine, Petersen, K., Petersen, Morten & Mundy, J., 2009, In: Current Opinion in Plant Biology. 12, 5, p. 615-621 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Antimicrobial and Antivirulence Action of Eugenia brejoensis Essential Oil in vitro and in vivo Invertebrate Models

    Filho, C. M. B., da Silva, L. C. N., da Silva, M. V., Løbner-Olesen, Anders, Struve, C., Krogfelt, K. A., Correia, M. T. D. S. & Oliva, M. L. V., 2020, In: Frontiers in Microbiology. 11, 11 p., 424.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Diversity of type II toxin-antitoxin systems of enterobacteria and their contribution to antibiotic persistence

    Fino, C., 2020, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  12. Published

    PasT of Escherichia coli sustains antibiotic tolerance and aerobic respiration as a bacterial homolog of mitochondrial Coq10

    Fino, C., Vestergaard, M., Ingmer, Hanne, Pierrel, F., Gerdes, K. & Harms, A., 2020, In: MicrobiologyOpen. 9, 8, 36 p., e1064.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    DNA repair

    Fleck, O. & Nielsen, Olaf, 1 Feb 2004, In: Journal of Cell Science. 117, Pt 4, p. 515-7 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Spd1 accumulation causes genome instability independently of ribonucleotide reductase activity but functions to protect the genome when deoxynucleotide pools are elevated

    Fleck, O., Vejrup-Hansen, R., Watson, A., Carr, A. M., Nielsen, Olaf & Holmberg, Christian, 2013, In: Journal of Cell Science. 126, p. 4985-4994 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Deoxynucleoside salvage in fission yeast allows rescue of ribonucleotide reductase deficiency but not Spd1-mediated inhibition of replication

    Fleck, O., Fahnøe, Ulrik, Løvschal, K. V., Gasasira, M. U., Marinova, I. N., Kragelund, Birthe Brandt, Carr, A. M., Hartsuiker, E., Holmberg, Christian & Nielsen, Olaf, 25 Apr 2017, In: Genes. 8, 5, 14 p., 128.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Protein Structure Prediction Using Bee Colony Optimization Metaheuristic: Extended Abstract

    Fonseca, R., Paluszewski, M. & Winter, Pawel, 2008, In: Koebenhavns Universitet. Datalogisk Institut. Rapport. 12, 11 p.

    Research output: Contribution to journal › Conference abstract in journal › Research

  17. Published

    Plants flex their skeletons.

    Foster, R., Mattsson, O. & Mundy, J., 2003, In: Trends in Plant Science. 8, 5, p. 202-4 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Plant autoimmunity - fresh insights into an old phenomenon

    Freh, M., Gao, Jinlan, Petersen, Morten & Panstruga, R., 2022, In: Plant Physiology. 188, 3, p. 1419-1434 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    JAFA: a protein function annotation meta-server.

    Friedberg, I., Harder, T. & Godzik, A., 2006, In: Nucleic Acids Research. 34, Web Server issue, p. W379-81

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Using an alignment of fragment strings for comparing protein structures.

    Friedberg, I., Harder, T., Kolodny, R., Sitbon, E., Li, Z. & Godzik, A., 2007, In: Bioinformatics. 23, 2, p. e219-24

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Determination of the optimal chromosomal location(s) for a DNA element in Escherichia coli using a novel transposon-mediated approach

    Frimodt-Møller, Jakob, Charbon, Godefroid, Krogfelt, K. A. & Løbner-Olesen, Anders, 11 Sep 2017, In: Journal of Visualized Experiments. 127, e55946.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Bacterial chromosomes and their replication

    Frimodt-Møller, Jakob, Boesen, Thias Oberg, Charbon, Godefroid & Løbner-Olesen, Anders, 2024, Molecular Medical Microbiology. Tang, Y-W., Hindiyeh, M. Y., Liu, D., Sails, A., Spearman, P. & Zhang, J-R. (eds.). 3 ed. Academic Press, Vol. 1. p. 279-307 29 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  23. Published

    DNA replication control is linked to genomic positioning of control regions in Escherichia coli

    Frimodt-Møller, Jakob, Charbon, Godefroid, Krogfelt, K. A. & Løbner-Olesen, Anders, 2016, In: P L o S Genetics. 12, 9, 27 p., e1006286.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Activating the Cpx response induces tolerance to antisense PNA delivered by an arginine-rich peptide in Escherichia coli

    Frimodt-Møller, Jakob, Koulouktsis, A., Charbon, Godefroid, Otterlei, M., Nielsen, Peter E. & Løbner-Olesen, Anders, 2021, In: Molecular Therapy - Nucleic Acids. 25, p. 444-454 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Initiation of Replication in Escherichia coli: A Comprehensive Study in Regulation of Initiation and the Interlink to Chromosomal Organization

    Frimodt-Møller, Jakob, 2015, Department of Biology, Faculty of Science, University of Copenhagen. 205 p.

    Research output: Book/Report › Ph.D. thesis › Research

  26. Published

    Control regions for chromosome replication are conserved with respect to sequence and location among Escherichia coli strains

    Frimodt-Møller, Jakob, Charbon, Godefroid, Krogfelt, K. A. & Løbner-Olesen, Anders, 2015, In: Frontiers in Microbiology. 6, 15 p., 1011.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Control of bacterial chromosome replication by non-coding regions outside the origin

    Frimodt-Møller, Jakob, Charbon, Godefroid & Løbner-Olesen, Anders, 2017, In: Current Genetics. 63, 4, p. 607-611 5 p.

    Research output: Contribution to journal › Review › Research › peer-review

  28. Published

    Translocation of non-lytic antimicrobial peptides and bacteria penetrating peptides across the inner membrane of the bacterial envelope

    Frimodt-Møller, Jakob, Campion, C., Nielsen, Peter E. & Løbner-Olesen, Anders, 2022, In: Current Genetics. 68, 1, p. 83-90

    Research output: Contribution to journal › Review › Research › peer-review

  29. Published

    Efflux-Pump Upregulation: From Tolerance to High-level Antibiotic Resistance?

    Frimodt-Møller, Jakob & Løbner-Olesen, Anders, 2019, In: Trends in Microbiology. 27, 4, p. 291-293

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Inhibition of Flp Recombinase by the Topoisomerase I-targeting Drugs, Camptothecin and NSC-314622

    From Frøhlich, R., Hansen, S. G., Lisby, Michael, Grainge, I., Westergaard, O., Jayaram, M. & Knudsen, B. R., 9 Mar 2001, In: Journal of Biological Chemistry. 276, 10, p. 6993-6997 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Virulence, Resistance, and Genomic Fingerprint Traits of Vibrio cholerae Isolated from 12 Species of Aquatic Products in Shanghai, China

    Fu, H., Yu, P., Liang, W., Kan, B., Peng, Xu & Chen, L., 2020, In: Microbial Drug Resistance. 26, 12, p. 1526-1539 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Transcriptome analysis of Sulfolobus solfataricus infected with two related fuselloviruses reveals novel insights into the regulation of CRISPR-Cas system

    Fusco, S., Liguori, R., Limauro, D., Bartolucci, S., She, Q. & Contursi, P., 2015, In: Biochimie. 118, p. 322-332 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Unravelling the role of the F55 regulator in the transition from lysogeny to UV induction of sulfolobus spindle-shaped virus 1

    Fusco, S., She, Q., Fiorentino, G., Bartolucci, S. & Contursi, P., 2015, In: Journal of Virology. 89, 12, p. 6453-6461 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Tlys, a newly identified Sulfolobus spindle-shaped virus 1 transcript expressed in the lysogenic state, encodes a DNA-binding protein interacting at the promoters of the early genes

    Fusco, S., She, Q., Bartolucci, S. & Contursi, P., 2013, In: Journal of Virology. 87, 10, p. 5926-5936 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Characterization and transcriptional analysis of two gene clusters for type IV secretion machinery in Wolbachia of Armadillidium vulgare

    Félix, C., Pichon, S., Braquart-Varnier, C., Braig, H., Chen, L., Garrett, Roger Antony, Martin, G. & Grève, P., 2008, In: Research in Microbiology. 159, 6, p. 481-5 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    TopBP1-mediated DNA processing during mitosis

    Gallina, I., Christiansen, S. K., Pedersen, R. T., Lisby, Michael & Østergaard, Vibe Hallundbæk, 2016, In: Cell Cycle. 15, 2, p. 176-183 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Cmr1/WDR76 defines a nuclear genotoxic stress body linking genome integrity and protein quality control

    Gallina, I., S.Colding-Christensen, Camilla, Henriksen, P., Beli, P., Nakamura, K., Offman, J., Barfred, D. P., Pinela da Silva, S. C., Hoffmann, E., Groth, Anja, Choudhary, C. & Lisby, Michael, 2015, In: Nature Communications. 6, 16 p., 6533.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    New aspects of protein stability and turnover in the regulation of genome integrity: the role of Cmr1 and Rad56

    Gallina, I., 2013, Department of Biology, Faculty of Science, University of Copenhagen. 195 p.

    Research output: Book/Report › Ph.D. thesis › Research

  39. Published

    Insulin-like growth factor II: complexity of biosynthesis and receptor binding

    Gammeltoft, S., Christiansen, Jan, Nielsen, F. C. & Verland, S., 1991, In: Advances in Experimental Medicine and Biology. 293, p. 31-44 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Genome-wide identification of estrogen receptor alpha-binding sites in mouse liver.

    Gao, H., Fält, S., Sandelin, Albin Gustav, Gustafsson, J. & Dahlman-Wright, K., 2007, In: Molecular Endocrinology. 22, 1, p. 10-22 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Rfam: updates to the RNA families database

    Gardner, P. P., Daub, J., Tate, J. G., Nawrocki, E. P., Kolbe, D. L., Lindgreen, S., Wilkinson, A. C., Finn, R. D., Griffiths-Jones, S., Eddy, S. R. & Bateman, A., 2008, In: Nucleic Acids Research.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Mutation of miRNA target sequences during human evolution.

    Gardner, P. P. & Vinther, Jeppe, 2008, In: Trends in Genetics. 24, 6, p. 262-5 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Archaeal CRISPR-based immune systems: exchangeable functional modules

    Garrett, Roger Antony, Vestergaard, G. A. & Shah, S. A., 2011, In: Trends in Microbiology. 19, 11, p. 549-56 8 p.

    Research output: Contribution to journal › Review › Research › peer-review

  44. Published

    Archaeal Viruses and Their Interactions with CRISPR-Cas Systems

    Garrett, Roger Antony, Shah, S. A., Martinez Alvarez, Laura & Peng, Xu, 2020, Biocommunication of Phages. 1 ed. Springer, p. 199-220 22 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  45. Published

    A backward view from 16S rRNA to archaea to the universal tree of life to progenotes Reminiscences of Carl Woese

    Garrett, Roger Antony, 2014, In: R N A Biology. 11, 3, p. 232-235 4 p.

    Research output: Contribution to journal › Review › Research › peer-review

  46. Published

    CRISPR-Cas adaptive immune systems of the sulfolobales: unravelling their complexity and diversity

    Garrett, Roger Antony, Shah, S. A., Erdmann, S., Guannan, L., Mousaei, M., León Sobrino, C., Peng, W., Islin, S. R., Deng, Ling, Vestergaard, G., Peng, Xu & She, Q., 2015, In: Life. 5, 1, p. 783-817 35 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Archaeal rRNA operons, intron splicing and homing endonucleases, RNA polymerase operons and phylogeny

    Garrett, Roger Antony, Aagaard, C. S., Andersen, M., Dalgaard, J., Lykke-Andersen, J., Phan, H. T. N., Trevisanato, S., Østergaard, L., Larsen, N. & Leffers, H., 1994, In: Systematic and Applied Microbiology. 16, 4, p. 680-691

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Archaeal physiology: the secrets of termination

    Garrett, Roger Antony, 2016, In: Nature Microbiology. 1, 2 p., 16159.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Metagenomic analyses of novel viruses and plasmids from a cultured environmental sample of hyperthermophilic neutrophiles

    Garrett, Roger Antony, Prangishvili, D., Shah, S. A., Reuter, M., Stetter, K. O. & Peng, Xu, 1 Nov 2010, In: Environmental Microbiology. 12, 11, p. 2918-30 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    CRISPR-based immune systems of the Sulfolobales: complexity and diversity

    Garrett, Roger Antony, Shah, S. A., Vestergaard, G. A., Deng, Ling, Guðbergsdóttir, S. R., Kenchappa, C. S., Erdmann, S. & She, Q., 2011, In: Biochemical Society Transactions. 39, 1, p. 51-57 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Isolation and characterization of the first Xylanolytic hyperthermophilic euryarchaeon Thermococcus sp strain 2319x1 and its unusual multidomain glycosidase

    Gavrilov, S. N., Stracke, C., Jensen, K., Menzel, P., Kallnik, V., Slesarev, A., Sokolova, T., Zayulina, K., Bräsen, C., Bonch-Osmolovskaya, E. A., Peng, Xu, Kublanov, I. V. & Siebers, B., 2016, In: Frontiers in Microbiology. 7, 17 p., 552.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Microbiology: pumping persisters

    Gerdes, K. & Semsey, S., 2016, In: Nature. 534, 7605, p. 41-42 2 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  53. Published

    Hypothesis: type I toxin - antitoxin genes enter the persistence field-a feedback mechanism explaining membrane homoeostasis

    Gerdes, K., 2016, In: Royal Society of London. Philosophical Transactions B. Biological Sciences. 371, 1707, 9 p., 20160189.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    TopBP1/Dpb11 binds DNA anaphase bridges to prevent genome instability

    Germann, S. M., Schramke, V., Pedersen, R. T., Gallina, I., Eckert-Boulet, N., Østergaard, Vibe Hallundbæk & Lisby, Michael, 2014, In: Journal of Cell Biology. 204, 1, p. 45-59 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    Dpb11/TopBP1 plays distinct roles in DNA replication, checkpoint response and homologous recombination

    Germann, S. M., Østergaard, Vibe Hallundbæk, Haas, C., Salis, P., Motegi, A. & Lisby, Michael, 2011, In: D N A Repair. 10, 2, p. 210-224 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Dpb11/TopBP1 contributes to genomicstability via homologous recombinationand checkpoint signaling

    Germann, S. M., 2009, Biologisk Institut: Museum Tusculanum. 175 p.

    Research output: Book/Report › Ph.D. thesis › Research

  57. Published

    Thresholds for clinical importance were defined for the European Organisation for Research and Treatment of Cancer Computer Adaptive Testing Core-an adaptive measure of core quality of life domains in oncology clinical practice and research

    Giesinger, J. M., Loth, F. L. C., Aaronson, N. K., Arraras, J. I., Caocci, G., Efficace, F., Grønvold, Mogens, van Leeuwen, M., Petersen, Morten, Ramage, J., Tomaszewski, K. A., Young, T., Holzner, B. & EORTC Quality of Life Group, E. Q. O. L. G., 2020, In: Journal of Clinical Epidemiology. 117, p. 117-125 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    Thresholds for clinical importance were established to improve interpretation of the EORTC QLQ-C30 in clinical practice and research

    Giesinger, J. M., Loth, F. L. C., Aaronson, N. K., Arraras, J. I., Caocci, G., Efficace, F., Grønvold, Mogens, van Leeuwen, M., Petersen, Morten, Ramage, J., Tomaszewski, K. A., Young, T., Holzner, B. & EORTC Quality of Life Group, E. Q. O. L. G., 2020, In: Journal of Clinical Epidemiology. 118, p. 1-8 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    An improved PCR method for endogenous DNA retrieval in contaminated Neandertal samples based on the usage of blocking primers

    Gigli, E., Rasmussen, M., Civit, S., Rosas, A., de la Rasilla, M., Fortea, J., Gilbert, M Thomas P, Willerslev, Eske & Lalueza-Fox, C., 2009, In: Journal of Archaeological Science. 36, p. 2676-2679

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    Response to Comment by Poinar et al. on "DNA from Pre-Clovis Human Coprolites in Oregon, North America"

    Gilbert, M Thomas P, Jenkins, D., Higham, T., Rasmussen, M., Malmstrom, H., Svensson, E., Sanchez, J., Cummings, L., Yohe, I. R., Hofreiter, M., Götherström, A. & Willerslev, Eske, 2009, In: Science. 325, 5937, p. 148 1 p.

    Research output: Contribution to journal › Comment/debate › Research

  61. Published

    FOXP3+ regulatory T cells in cutaneous T-cell lymphomas: association with disease stage and survival

    Gjerdrum, L. M., Woetmann, Anders , Ødum, Niels, Burton, C. M., Rossen, K., Skovgaard, G. L., Ryder, L. P. & Ralfkiaer, E., 2007, In: Leukemia. 21, 12, p. 2512-2518 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    FOXP3 positive regulatory T-cells in cutaneous T-cell lymphomas

    Gjerdrum, L. M., Woetmann, Anders , Ødum, Niels & Ralfkiaer, E., 2008, In: Virchows Archiv. 452, Suppl. 1, p. S4-S4

    Research output: Contribution to journal › Journal article › Research › peer-review

  63. Published

    FOXP3 positive regulatory T-cells in cutaneous and systemic CD30 positive T-cell lymphoproliferations

    Gjerdrum, L. M., Woetmann, Anders , Ødum, Niels, Hother, C., Henrik-Nielsen, R., Gniadecki, R. & Ralfkiaer, E., 2008, In: European Journal of Haematology. 80, 6, p. 483-9 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    A promoter within the E6 ORF of human papillomavirus type 16 contributes to the expression of the E7 oncoprotein from a monocistronic mRNA

    Glahder, J. H., Hansen, C. N., Vinther, Jeppe, Madsen, B. S. & Norrild, B., 2003, In: Journal of General Virology. 84, Pt 12, p. 3429-41 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    Effects of LPS Composition in Escherichia coli on Antibacterial Activity and Bacterial Uptake of Antisense Peptide-PNA Conjugates

    Goltermann, Lise, Zhang, Meiqin, Ebbensgaard, Anna Elisabeth, Fiodorovaite, M., Yavari, Niloofar, Løbner-Olesen, Anders & Nielsen, Peter E., 2022, In: Frontiers in Microbiology. 13, 877377.

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    Comparative genomics for non-O1/O139 Vibrio cholerae isolates recovered from the Yangtze River Estuary versus V. cholerae representative isolates from serogroup O1

    Gong, L., Yu, P., Zheng, H., Gu, W., He, W., Tang, Y., Wang, Y., Dong, Y., Peng, Xu, She, Q., Xie, L. & Chen, L., 2019, In: Molecular Genetics and Genomics. 294, 2, p. 417-430

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    Getting the best out of long-wavelength X-rays: de novo chlorine/sulfur SAD phasing of a structural protein from ATV

    Goulet, A., Vestergaard, G. A., Felisberto-Rodrigues, C., Campanacci, V., Garrett, Roger Antony, Cambillau, C. & Ortiz-Lombardía, M., 2010, In: Acta Crystallographica. Section D: Biological Crystallography. 66, Pt 3, p. 304-308 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    Crystallization and preliminary X-ray diffraction analysis of protein 14 from Sulfolobus islandicus filamentous virus (SIFV)

    Goulet, A., Spinelli, S., Campanacci, V., Porciero, S., Blangy, S., Garrett, Roger Antony, van Tilbeurgh, H., Leulliot, N., Basta, T., Prangishvili, D. & Cambillau, C., 2006, In: Acta Crystallographica. Section F : Structural Biology and Crystallization Communications. 62, Pt 9, p. 884-886 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. E-pub ahead of print

    Destabilization and Degradation of a Disease-Linked PGM1 Protein Variant

    Gouliaev, F., Jonsson, Nicolas, Gersing, S., Lisby, Michael, Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2024, (E-pub ahead of print) In: Biochemistry.

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    Receptor-like kinase complexes in plant innate immunity

    Greeff, M. C., Roux, M. E., Mundy, J. & Petersen, Morten, 2012, In: Frontiers in Plant Science. 3, 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    Suppressing autoimmunity in Arabidopsis thaliana with dominant negative immune receptors

    Greeff, M. C., 2014, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  72. Published

    MicroRNA-145 targets YES and STAT1 in colon cancer cells

    Gregersen, Lea Haarup, Jacobsen, A. B., Frankel, Lisa, Wen, J., Krogh, Anders & Lund, Anders H., 2010, In: PLoS ONE. 5, 1, p. e8836

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Proteins involved in attack and defence in Zygomycete-aphid interactions

    Grell, M. N., Jensen, Annette Bruun & Lange, L., 2009.

    Research output: Contribution to conference › Conference abstract for conference › Research

  74. Published

    Adaptation to diverse nitrogen-limited environments by deletion or extrachromosomal element formation of the GAP1 locus

    Gresham, D., Usaite, R., Germann, S. M., Lisby, Michael, Botstein, D. & Regenberg, Birgitte, 2010, In: Proceedings of the National Academy of Science of the United States of America. 107, 43, p. 18551-6 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    Genomic comparison of archaeal conjugative plasmids from Sulfolobus

    Greve, B., Jensen, S., Brügger, K., Zillig, W. & Garrett, Roger Antony, 2004, In: Archaea. Vol. 1., p. 231-239

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    Basal level of ppGpp coordinates Escherichia coli cell heterogeneity and ampicillin resistance and persistence

    Grucela, Paulina Katarzyna & Zhang, Yong, 2023, In: Microbial Cell. 10, 11, p. 248-260 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Ribose 5-phosphate: the key metabolite bridging the metabolisms of nucleotides and amino acids during stringent response in Escherichia coli?

    Grucela, Paulina Katarzyna, Fuhrer, T., Sauer, U., Chao, Y. & Zhang, Yong, 2023, In: Microbial Cell. 10, 7, p. 141-144

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    Chromosome-scale genomes provide new insights into subspecies divergence and evolutionary characteristics of the giant panda

    Guang, X., Lan, T., Wan, Q. H., Huang, Y., Li, H., Zhang, M., Li, R., Zhang, Z., Lei, Y., Zhang, L., Zhang, H., Li, D., Li, X., Li, H., Xu, Y., Qiao, M., Wu, D., Tang, K., Zhao, P., Lin, J-Q. & 11 others, Sahu, S. K., Liang, Q., Jiang, W., Zhang, D., Xu, X., Liu, X., Lisby, Michael, Yang, H., Kristiansen, Karsten, Liu, Huan & Fang, S., 2021, In: Science Bulletin. 66, 19, p. 2002-2013 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    Diverse CRISPR-Cas responses and dramatic cellular DNA changes and cell death in pKEF9-conjugated Sulfolobus species

    Guannan, L., She, Q. & Garrett, Roger Antony, 2016, In: Nucleic Acids Research. 44, 9, p. 4233-4242 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    Studying Extrachromosomal Genetic Elements in Sulfolobus

    Guannan, L., 2015, Department of Biology, Faculty of Science, University of Copenhagen. 85 p.

    Research output: Book/Report › Ph.D. thesis › Research

  81. Published

    Genomic and transcriptomic analysis unveils population evolution and development of pesticide resistance in fall armyworm Spodoptera frugiperda

    Gui, F., Lan, T., Zhao, Y., Guo, W., Dong, Y., Fang, D., Liu, H., Li, H., Wang, H., Hao, R., Cheng, X., Li, Y., Yang, P., Sahu, S. K., Chen, Y., Cheng, L., He, S., Liu, P., Fan, G., Lu, H. & 24 others, Hu, G., Dong, W., Chen, B., Jiang, Y., Zhang, Y., Xu, H., Lin, F., Slippers, B., Postma, A., Jackson, M., Abate, B. A., Tesfaye, K., Demie, A. L., Bayeleygne, M. D., Degefu, D. T., Chen, F., Kuria, P. K., Kinyua, Z. M., Liu, T., Yang, H., Huang, F., Liu, X., Sheng, J. & Kang, L., 2022, In: Protein & Cell (Print). 13, 7, p. 513-531 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Valine-Induced Isoleucine Starvation in Escherichia coli K-12 Studied by Spike-In Normalized RNA Sequencing

    Gummesson, Bertil, Shah, S. A., Borum, A. S., Fessler, M., Mitarai, Namiko, Sørensen, Michael Askvad & Svenningsen, Sine Lo, 2020, In: Frontiers in Genetics. 11, 17 p., 144.

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    Genome Analyses of Icelandic Strains of Sulfolobus islandicus, Model Organisms for Genetic and Virus-Host Interaction Studies

    Guo, L., Brügger, K., Liu, C., Shah, S. A., Zheng, H., Zhu, Y., Wang, S., Lillestøl, R. K., Chen, L., Frank, J., Prangishvili, D., Paulin, L., She, Q., Huang, L. & Garrett, Roger Antony, 1 Apr 2011, In: Journal of Bacteriology. 193, 7, p. 1672-80 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    Investigation of the Sulfolobus islandicus III-B Cmr-α CRISPR-Cas system and SMV1 anti-CRISPR activity

    Guo, T., 2019, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  85. Published

    Tolerance of Sulfolobus SMV1 virus to the immunity of I-A and III-B CRISPR-Cas systems in Sulfolobus islandicus

    Guo, T., Han, W. & She, Q., 2019, In: RNA Biology. 16, 4, p. 549-556 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    Cmr3 regulates the suppression on cyclic oligoadenylate synthesis by tag complementarity in a Type III-B CRISPR-Cas system

    Guo, T., Zheng, F., Zeng, Z., Yang, Y., Li, Q., She, Q. & Han, W., 2019, In: RNA Biology. 16, 10, p. 1513-1520

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    Chloranthus genome provides insights into the early diversification of angiosperms

    Guo, X., Fang, D., Sahu, S. K., Yang, S., Guang, X., Folk, R., Smith, S. A., Chanderbali, A. S., Chen, S., Liu, M., Yang, T., Zhang, S., Liu, X., Xu, X., Soltis, P. S., Soltis, D. E. & Liu, Huan, 2021, In: Nature Communications. 12, 14 p., 6930.

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    Functional characterization of a conserved archaeal viral operon revealing single-stranded DNA binding, annealing and nuclease activities

    Guo, Y., Kragelund, Birthe Brandt, White, M. F. & Peng, Xu, 2015, In: Journal of Molecular Biology. 427, 12, p. 2179-2191 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector-borne viral and plasmid genes and protospacers

    Guðbergsdóttir, S. R., Deng, L., Chen, Z., Jensen, J. V. K., Jensen, L. R., She, Q. & Garrett, Roger Antony, 2011, In: Molecular Microbiology. 79, 1, p. 35-49 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    Recombinational DNA repair is regulated by compartmentalization of DNA lesions at the nuclear pore complex

    Géli, V. & Lisby, Michael, 2015, In: BioEssays. 37, 12, p. 1287-1292 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    Catalase and NO CATALASE ACTIVITY1 promote autophagy-dependent cell death in Arabidopsis

    Hackenberg, T., Juul, T., Auzina, A., Gwizdz, S., Malolepszy, A., Van Der Kelen, K., Dam, S., Bressendorff, Simon, Lorentzen, A. M., Roepstorff, P., Nielsen, K. L., Jorgensen, J., Hofius, D., Van Breusegem, F., Petersen, Morten & Andersen, S. U., 2013, In: Plant Cell. 25, 11, p. 4616-4626 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    Crystallization of two operator complexes from the Vibrio cholerae HigBA2 toxin-antitoxin module

    Hadzi, S., Garcia-Pino, A., Gerdes, K., Lah, J. & Loris, R., 2015, In: Acta Crystallographica. Section F: Structural Biology and Crystallization Communications Online. 71, 2, p. 226-233 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    Ribosome-dependent Vibrio cholerae mRNAse HigB2 is regulated by a β-strand sliding mechanism

    Hadži, S., Garcia-Pino, A., Haesaerts, S., Jurėnas, D., Gerdes, K., Lah, J. & Loris, R., 5 May 2017, In: Nucleic Acids Research. 45, 8, p. 4972-4983 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    Ancient DNA reveals late survival of mammoth and horse in interior Alaska

    Haile, James Seymour, Froese, D. G., Macphee, R. D. E., Roberts, R. G., Arnold, L. J., Reyes, A. V., Rasmussen, M., Nielsen, Rasmus, Brook, B. W., Robinson, S., Demuro, M., Gilbert, M Thomas P, Munch, K., Austin, J. J., Cooper, A., Barnes, I., Möller, P. & Willerslev, Eske, 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 52, p. 22352-7 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    Posttranscriptional crossregulation between Drosha and DGCR8

    Han, J., Pedersen, Jakob Skou, Kwon, S. C., Belair, C. D., Kim, Y., Yeom, K., Yang, W., Haussler, D., Blelloch, R. & Kim, V. N., 2009, In: Cell. 136, 1, p. 75-84 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Chromosome-scale assembly and whole-genome sequencing of 266 giant panda roundworms provide insights into their evolution, adaptation and potential drug targets

    Han, L., Lan, T., Li, D., Li, H., Deng, L., Peng, Z., He, S., Zhou, Y., Han, R., Li, L., Lu, Y., Lu, H., Wang, Q., Yang, S., Zhu, Y., Huang, Y., Cheng, X., Yu, J., Wang, Y., Sun, H. & 8 others, Chai, H., Yang, H., Xu, X., Lisby, Michael, Liu, Q., Kristiansen, Karsten, Liu, Huan & Hou, Z., 2022, In: Molecular Ecology Resources. 22, 2, p. 768-785 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    A type III-B CRISPR-Cas effector complex mediating massive target DNA destruction

    Han, W., Li, Y., Deng, Ling, Feng, M., Peng, W., Hallstrøm, S., Zhang, J., Peng, N., Liang, Y. X., White, M. F. & She, Q., 2017, In: Nucleic Acids Research. 45, 4, p. 1983–1993 11 p., gkw1274.

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    CRISPR History: Discovery, Characterization, and Prosperity

    Han, W. & She, Q., 2017, CRISPR in Animals and Animal Models. Torres-Ruiz, R. & Rodriguez-Perales, S. (eds.). Elsevier, p. 1-21 20 p. (Progress in Molecular Biology and Translational Science, Vol. 152).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  99. Published

    NQO-induced DNA-less cell formation is associated with chromatin protein degradation and dependent on A0A1-ATPase in Sulfolobus

    Han, W., Xu, Y., Feng, X., Liang, Y. X., Huang, L., Shen, Y. & She, Q., 14 Aug 2017, In: Frontiers in Microbiology. 8, 12 p., 1480.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    Reverse gyrase functions in genome integrity maintenance by protecting DNA breaks in vivo

    Han, W., Feng, X. & She, Q., Jul 2017, In: International Journal of Molecular Sciences. 18, 7, 13 p., 1340.

    Research output: Contribution to journal › Journal article › Research › peer-review

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