Functional Genomics

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  1. Published

    Inhibition of Type III CRISPR-Cas Immunity by an Archaeal Virus-Encoded Anti-CRISPR Protein

    Bhoobalan, Yuvaraj, Johansen, T. B., Di Cianni, N. & Peng, Xu, 2019, In: Cell. 179, 2, p. 448-458, e1-e11

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

    Birney, E., Stamatoyannopoulos, J. A., Dutta, A., Guigó, R., Gingeras, T. R., Margulies, E. H., Weng, Z., Snyder, M., Dermitzakis, E. T., Thurman, R. E., Kuehn, M. S., Taylor, C. M., Neph, S., Koch, C. M., Asthana, S., Malhotra, A., Adzhubei, I., Greenbaum, J. A., Andrews, R. M., Flicek, P. & 36 others, Boyle, P. J., Cao, H., Carter, N. P., Clelland, G. K., Davis, S., Day, N., Dhami, P., Dillon, S. C., Dorschner, M. O., Fiegler, H., Giresi, P. G., Goldy, J., Hawrylycz, M., Haydock, A., Humbert, R., James, K. D., Johnson, B. E., Johnson, E. M., Frum, T. T., Rosenzweig, E. R., Karnani, N., Lee, K., Lefebvre, G. C., Navas, P. A., Neri, F., Parker, S. C. J., Sabo, P. J., Sandstrom, R., Sandelin, Albin Gustav, Pedersen, Jakob Skou, ENCODE Project Consortium, E. P. C., NISC Comparative Sequencing Program, N. C. S. P., Baylor College of Medicine Human Genome Sequencing Center, B. C. O. M. H. G. S. C., Washington University Genome Sequencing Center, W. U. G. S. C., Broad Institute, B. I. & Children's Hospital Oakland Research Institute, C. H. O. R. I., 2007, In: Nature. 447, 7146, p. 799-816 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Structural variations between small alarmone hydrolase dimers support different modes of regulation of the stringent response

    Bisiak, F., Chrenková, A., Zhang, S., Pedersen, J. N., Otzen, D. E., ZHANG, YONG & Brodersen, D. E., 2022, In: Journal of Biological Chemistry. 298, 7, 16 p., 102142.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Viruses in acidic geothermal environments of the Kamchatka Peninsula

    Bize, A., Peng, Xu, Prokofeva, M., Maclellan, K., Lucas, S., Forterre, P., Garrett, Roger Antony, Bonch-Osmolovskaya, E. A. & Prangishvili, D., 2008, In: Research in Microbiology. 159, 5, p. 358-66 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    A novel type of silencing factor, Clr2, is necessary for transcriptional silencing at various chromosomal locations in the fission yeast Schizosaccharomyces pombe

    Bjerling, P., Ekwall, K., Egel, Richard & Thon, Genevieve, 2004, In: Nucleic Acids Research. 32, 15, p. 4421-8 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Suppressors of Hyperinitiation in Escherichia coli Couple DNA Replication to Precursor Biosynthesis and Energy Metabolism

    Bjørn, L., 2015, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  7. Published

    Lack of the RNA chaperone Hfq attenuates pathogenicity of several Escherichia coli pathotypes towards Caenorhabditis elegans

    Bojer, M. S., Jakobsen, H., Struve, C., Krogfelt, K. A. & Løbner-Olesen, Anders, 2012, In: Microbes and Infection. 14, 12, p. 1034-1039 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    A Unified Resource for Tracking Anti-CRISPR Names

    Bondy-Denomy, J., Davidson, A. R., Doudna, J. A., Fineran, P. C., Maxwell, K. L., Moineau, S., Peng, Xu, Sontheimer, E. J. & Wiedenheft, B., 2018, In: CRISPR Journal. 1, 5, p. 304-305

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  9. Published

    Control of specific gene expression by gibberellin and brassinosteroid

    Bouquin, T., Meier, C., Foster, R., Nielsen, Mads Eggert & Mundy, J., 2001, In: Plant Physiology.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    The Arabidopsis lue1 mutant defines a katanin p60 ortholog involved in hormonal control of microtubule orientation during cell growth.

    Bouquin, T., Mattsson, O., Naested, H., Foster, R. & Mundy, J., 2003, In: Journal of Cell Science. 116, Pt 5, p. 791-801 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    A Unified Nomenclature for Protein Subunits of Mediator Complexes Linking Transcriptional Regulators to RNA Polymerase II

    Bourbon, H. M., Aguilera, A., Ansari, A. Z., Asturias, F. J., Berk, A. J., Bjorklund, S., Blackwell, T. K., Borggrefe, T., Carey, M., Carlson, M., Conaway, J. W., Conaway, R. C., Emmons, S. W., Fondell, J. D., Freedman, L. P., Fukasawa, T., Gustafsson, C. M., Han, M., He, X., Herman, P. K. & 27 others, Hinnebusch, A. G., Holmberg, Steen, Holstege, F. C., Jaehning, J. A., Kim, Y., Kuras, L., Leutz, A., Lis, J. T., Meisterernest, M., Naar, A. M., Nasmyth, K., Parvin, J. D., Ptashne, M., Reinberg, D., Ronne, H., Sadowski, I., Sakurai, H., Sipiczki, M., Sternberg, P. W., Stillman, D. J., Strich, R., Struhl, K., Svejstrup, J. Q., Tuck, S., Winston, F., Roeder, R. G. & Kornberg, R. D., 2004, In: Molecular Cell. 14, 5, p. 553-557

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Bacterial growth control studied by flow cytometry

    Boye, E. & Løbner-Olesen, Anders, 1 Feb 1991, In: Research in Microbiology. 142, 2-3, p. 131-5 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Flow cytometry: illuminating microbiology

    Boye, E. & Løbner-Olesen, Anders, Feb 1990, In: The New Biologist. 2, 2, p. 119-25 7 p.

    Research output: Contribution to journal › Review › Research › peer-review

  14. Published

    Timing of chromosomal replication in Escherichia coli

    Boye, E., Løbner-Olesen, Anders & Skarstad, K., 20 Dec 1988, In: B B A - Reviews on Cancer. 951, 2-3, p. 359-64 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    The role of dam methyltransferase in the control of DNA replication in E. coli

    Boye, E. & Løbner-Olesen, Anders, 7 Sep 1990, In: Cell. 62, 5, p. 981-9 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Regulation of DNA replication in Escherichia coli

    Boye, E., Lyngstadaas, A., Løbner-Olesen, Anders, Skarstad, K. & Wold, S., 1992, 43 Colloquium Mosbach. Springer Verlag, p. 15-26

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  17. Published

    Dam methyltransferase in Escherichia coli: Effects of different enzymatic levels on DNA replication and cell growth

    Boye, E., Lyngstadaas, A. & Løbner-Olesen, Anders, 1992, DNA replication: The Regulatory Mechanisms. P., H., E., F. & M, K. (eds.). Springer Verlag, p. 23-35

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  18. Published

    Identification of let-7-regulated oncofetal genes.

    Boyerinas, B., Park, S., Shomron, N., Hedegaard, M. M., Vinther, Jeppe, Andersen, J. S., Feig, C., Xu, J., Burge, C. B. & Peter, M. E., 2008, In: Cancer Research. 68, 8, p. 2587-91 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    The ZGRF1 Helicase Promotes Recombinational Repair of Replication-Blocking DNA Damage in Human Cells

    Brannvoll, A., Xue, X., Kwon, Y., Kompocholi, Smaragda, Simonsen, Anne Katrine Wrist, Bagge, Keerthana Stine Viswalingam, Gonzalez, L., Hickson, Ian David, Østergaard, Vibe Hallundbæk, Mankouri, H. W., Sung, P. & Lisby, Michael, 2020, In: Cell Reports. 32, 1, 25 p., 107849.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Constitutive SOCS-3 expression protects T-cell lymphoma against growth inhibition by IFNalpha

    Brender, C., Lovato, P., Sommer, V. H., Woetmann, Anders , Mathiesen, A., Geisler, Carsten, Wasik, M. & Ødum, Niels, 2005, In: Leukemia. 19, 2, p. 209-13 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Immunity in the moss Physcomitrella patens

    Bressendorff, Simon, 2012, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  22. Published

    An innate immunity pathway in the moss Physcomitrella patens

    Bressendorff, Simon, Azevedo da Silva, R., Kenchappa, C. S., Ponce de León, I., Olsen, J. V., Rasmussen, M. W., Erbs, G., Newman, Mari-Anne, Petersen, Morten & Mundy, J., 2016, In: The Plant Cell. 28, 6, p. 1328-1342 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Chitin-induced responses in the moss Physcomitrella patens

    Bressendorff, Simon, Rasmussen, M. W., Petersen, Morten & Mundy, J., 2017, Plant pattern recognition receptors: methods and protocols. Shan, L. & He, P. (eds.). Springer, p. 317-324 8 p. (Methods in Molecular Biology, Vol. 1578).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  24. Published

    Discrete structural dynamics of pseudo-palindromic motifs control DNA binding of bacterial toxin-antitoxin complexes

    Brodersen, D. E., Bendtsen, K. L., Xu, K., Luckmann, M., Winther, K. S., Shah, S. A. & Pedersen, C. N. S., 2017, In: F A S E B Journal. 31, S1, 1 p., 777.2.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  25. Published

    Arabidopsis MAP kinase 4 regulates salicylic acid- and jasmonic acid/ethylene-dependent responses via EDS1 and PAD4

    Brodersen, K. P., Petersen, Morten, Nielsen, H. B., Zhu, S., Newman, Mari-Anne, Shokat, K. M., Rietz, S., Parker, J. & Mundy, J., 2006, In: Plant Journal. 47, 4, p. 532-546 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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