Functional Genomics

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  1. 2001
  2. Published

    Inhibition of Flp Recombinase by the Topoisomerase I-targeting Drugs, Camptothecin and NSC-314622

    From Frøhlich, R., Hansen, S. G., Lisby, Michael, Grainge, I., Westergaard, O., Jayaram, M. & Knudsen, B. R., 9 Mar 2001, In: Journal of Biological Chemistry. 276, 10, p. 6993-6997 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Residues Within the N-terminal Domain of Human Topoisomerase I Play a Direct Role in Relaxation

    Lisby, Michael, Olesen, J. R., Skouboe, C., Krogh, B. O., Straub, T., Boege, F., Velmurugan, S., Martensen, P. M., Andersen, A. H., Jayaram, M., Westergaard, O. & Knudsen, B. R., 8 Jun 2001, In: Journal of Biological Chemistry. 276, 23, p. 20220-20227 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Rad52 forms DNA repair and recombination centers during S phase

    Lisby, Michael, Rothstein, R. & Mortensen, U. H., 17 Jul 2001, In: Proceedings of the National Academy of Sciences of the United States of America. 98, 15, p. 8276-8282 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    7. Proprioceptive evoked potentials (PEP) in man: Cerebral responses of changing weight loads on the hand

    Arnfred, Sidse Marie , CHEN, Ao, Eder, D. N., Glenthøj, Birte Yding & Hemmingsen, Ralf Peter, Oct 2001, In: Brain and Cognition. 47, 1-2, p. 54-57 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. 2002
  7. Published

    An Arabidopsis callose synthase.

    Ostergaard, L., Petersen, Morten, Mattsson, O. & Mundy, J., 2002, In: Plant Molecular Biology. 49, 6, p. 559-566 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    An exceptional case of historical outbreeding in African sable antelope populations

    Pitra, C., Hansen, Anders Johannes, Lieckfeldt, D. & Arctander, P., 2002, In: Molecular Ecology. 11, 7, p. 1197-208

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Cloning-free genome alterations in Saccharomyces cerevisiae using adaptamer-mediated PCR

    Reid, R. J. D., Lisby, Michael & Rothstein, R., 2002, In: Methods in Enzymology. 350, p. 258-77 20 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Knockout of Arabidopsis accelerated-cell-death11 encoding a sphingosine transfer protein causes activation of programmed cell death and defense.

    Brodersen, P., Petersen, Morten, Pike, H. M., Olszak, B., Skov, Søren, Odum, N., Jørgensen, L. B., Brown, R. E. & Mundy, J., 2002, In: Genes & Development. 16, 4, p. 490-502 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    MAP-kinaser--molekylaere transistorer i dyr og planter.

    Petersen, Morten, Brodersen, P. & Mundy, J., 2002, In: Ugeskrift for læger. 164, 24, p. 3184-8 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Population structure of the African savannah elephant inferred from mitochondrial control region sequences and nuclear microsatellite loci

    Nyakaana, S., Arctander, P. & Siegismund, Hans Redlef, 2002, In: Heredity. 89, 2, p. 90-8 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Protein phosphatase 2A (PP2A) regulates interleukin-4-mediated STAT6 signaling

    Woetmann, Anders , Brockdorff, J., Lovato, P., Nielsen, M., Leick, V., Rieneck, K., Svejgaard, A., Geisler, Carsten & Ødum, Niels, 2002, In: Journal of Biological Chemistry. 278, 5, p. 2787-91 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    SHP2 regulates IL-2 induced MAPK activation, but not Stat3 or Stat5 tyrosine phosphorylation, in cutaneous T cell lymphoma cells

    Lundin Brockdorff, J., Woetmann, Anders , Mustelin, T., Kaltoft, K., Zhang, Q., Wasik, M. A., Röpke, C. & Ødum, Niels, 2002, In: Cytokine. 20, 4, p. 141-7 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    The fission yeast ubiquitin-conjugating enzymes UbcP3, Ubc15, and Rhp6 affect transcriptional silencing of the mating-type region

    Nielsen, I. S., Nielsen, Olaf, Murray, J. M. & Thon, Genevieve, 1 Aug 2002, In: Eukaryotic Cell (Online Edition). 1, 4, p. 613-25 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. 2003
  17. Published

    A promoter within the E6 ORF of human papillomavirus type 16 contributes to the expression of the E7 oncoprotein from a monocistronic mRNA

    Glahder, J. H., Hansen, C. N., Vinther, Jeppe, Madsen, B. S. & Norrild, B., 2003, In: Journal of General Virology. 84, Pt 12, p. 3429-41 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    AFV1, a novel virus infecting hyperthermophilic archaea of the genus Acidianus.

    Bettstetter, M., Peng, Xu & Garrett RA, Prangishvili D., G. R. P. D., 2003, In: Virology.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Bi-phasic effect of interferon (IFN)-alpha: IFN-alpha up- and down-regulates interleukin-4 signaling in human T cells

    Eriksen, K. W., Sommer, V. H., Woetmann, Anders , Rasmussen, A. B., Brender, C., Svejgaard, A., Skov, Søren, Geisler, Carsten & Ødum, Niels, 2003, In: Journal of Biological Chemistry. 279, 1, p. 169-76 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Constitutive STAT3 activation in intestinal T cells from patients with Crohn's disease

    Lovato, P., Brender, C., Agnholt, J., Kelsen, J., Kaltoft, K., Svejgaard, A., Eriksen, K. W., Woetmann, Anders & Ødum, Niels, 2003, In: Journal of Biological Chemistry. 278, 19, p. 16777-81 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Gene finding with a hidden Markov model of genome structure and evolution.

    Pedersen, Jakob Skou & Hein, J., 2003, In: Bioinformatics. 19, 2, p. 219-27 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Genus-specific protein binding to the large clusters of DNA repeats (short regularly spaced repeats) present in Sulfolobus genomes

    Peng, Xu, Brügger, K., Shen, B., Chen, L., She, Q. & Garrett, Roger Antony, 2003, In: Journal of Bacteriology. 185, 8, p. 2410-7 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Identification and characterization of a cluster of transcription start sites located in the E6 ORF of human papillomavirus type 16

    Rosenstierne, M. W., Vinther, Jeppe, Hansen, C. N., Prydsoe, M. & Norrild, B., 2003, In: Journal of General Virology. 84, Pt 11, p. 2909-20 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Plants flex their skeletons.

    Foster, R., Mattsson, O. & Mundy, J., 2003, In: Trends in Plant Science. 8, 5, p. 202-4 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Relationships between fuselloviruses infecting the extremely thermophilic archaeon Sulfolobus: SSV1 and SSV2

    Stedman, K. M., She, Q., Phan, H., Arnold, H. P., Holz, I., Garrett, Roger Antony & Zillig, W., 2003, In: Research in Microbiology. 154, 4, p. 295-302 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    TRAP230/ARC240 and TRAP240/ARC250 Mediator subunits are functionally conserved through evolution

    Samuelsen, C. O., Baraznenok, V., Khorosjutina, O., Spahr, H., Kieselbach, T., Holmberg, Steen & Gustafsson, C. M., 2003, In: Proceedings of the National Academy of Science of the United States of America. 100, 11, p. 6422-6427 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    The Arabidopsis lue1 mutant defines a katanin p60 ortholog involved in hormonal control of microtubule orientation during cell growth.

    Bouquin, T., Mattsson, O., Naested, H., Foster, R. & Mundy, J., 2003, In: Journal of Cell Science. 116, Pt 5, p. 791-801 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    A human topoisomerase IIα heterodimer with only one ATP binding site can go through successive catalytic cycles

    Skouboe, C., Bjergbaek, L., Østergaard, Vibe Hallundbæk, Larsen, M. K., Knudsen, B. R. & Andersen, A. H., 21 Feb 2003, In: Journal of Biological Chemistry. 278, 8, p. 5768-5774 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Colocalization of multiple DNA double-strand breaks at a single Rad52 repair centre

    Lisby, Michael, Mortensen, U. H. & Rothstein, R., Jun 2003, In: Nature Cell Biology. 5, 6, p. 572-7 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    COP9 signalosome: a provider of DNA building blocks

    Nielsen, Olaf, 15 Jul 2003, In: Current Biology. 13, 14, p. R565-7

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Cell cycle-regulated centers of DNA double-strand break repair

    Lisby, Michael, Antúnez de Mayolo, A., Mortensen, U. H. & Rothstein, R., 10 Sep 2003, In: Cell Cycle. 2, 5, p. 479-83 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. 2004
  33. Published

    Arabidopsis VARIEGATED 3 encodes a chloroplast-targeted, zinc-finger protein required for chloroplast and palisade cell development

    Næsted, H., Holm, A., Jenkins, T., Nielsen, H. B., Harris, C. A., Beale, M. H., Andersen, M., Mant, A., Scheller, H. V., Camara, B., Mattsson, O. & Mundy, J., 2004, In: Journal of Cell Science. 117, 20, p. 4807-18 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    A Unified Nomenclature for Protein Subunits of Mediator Complexes Linking Transcriptional Regulators to RNA Polymerase II

    Bourbon, H. M., Aguilera, A., Ansari, A. Z., Asturias, F. J., Berk, A. J., Bjorklund, S., Blackwell, T. K., Borggrefe, T., Carey, M., Carlson, M., Conaway, J. W., Conaway, R. C., Emmons, S. W., Fondell, J. D., Freedman, L. P., Fukasawa, T., Gustafsson, C. M., Han, M., He, X., Herman, P. K. & 27 others, Hinnebusch, A. G., Holmberg, Steen, Holstege, F. C., Jaehning, J. A., Kim, Y., Kuras, L., Leutz, A., Lis, J. T., Meisterernest, M., Naar, A. M., Nasmyth, K., Parvin, J. D., Ptashne, M., Reinberg, D., Ronne, H., Sadowski, I., Sakurai, H., Sipiczki, M., Sternberg, P. W., Stillman, D. J., Strich, R., Struhl, K., Svejstrup, J. Q., Tuck, S., Winston, F., Roeder, R. G. & Kornberg, R. D., 2004, In: Molecular Cell. 14, 5, p. 553-557

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    A comparative method for finding and folding RNA secondary structures within protein-coding regions.

    Pedersen, Jakob Skou, Meyer, I. M., Forsberg, R., Simmonds, P. & Hein, J., 2004, In: Nucleic Acids Research. 32, 16, p. 4925-36 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    A novel type of silencing factor, Clr2, is necessary for transcriptional silencing at various chromosomal locations in the fission yeast Schizosaccharomyces pombe

    Bjerling, P., Ekwall, K., Egel, Richard & Thon, Genevieve, 2004, In: Nucleic Acids Research. 32, 15, p. 4421-8 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    An evolutionary model for protein-coding regions with conserved RNA structure.

    Pedersen, Jakob Skou, Forsberg, R., Meyer, I. M. & Hein, J., 2004, In: Molecular Biology and Evolution. 21, 10, p. 1913-22 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Computational method for discovery of estrogen responsive genes.

    Tang, S., Tan, S. L., Ramadoss, S. K., Kumar, A. P., Tang, M. E. & Bajic, V. B., 2004, In: Nucleic Acids Research. 32, 21, p. 6212-7 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    DNA repair: keeping it together.

    Lisby, Michael & Rothstein, R., 2004, In: Current Biology. 14, 23, p. R994-6

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Exceptionally diverse morphotypes and genomes of crenarchaeal hyperthermophilic viruses

    Prangishvili, D. & Garrett, Roger Antony, 2004, In: Biochemical Society Transactions. 32, Pt 2, p. 204-8 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Genomic comparison of archaeal conjugative plasmids from Sulfolobus

    Greve, B., Jensen, S., Brügger, K., Zillig, W. & Garrett, Roger Antony, 2004, In: Archaea. Vol. 1., p. 231-239

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    In vivo activation of STAT3 in cutaneous T-cell lymphoma. Evidence for an antiapoptotic function of STAT3.

    Sommer, V. H., Clemmensen, O. J., Nielsen, O., Wasik, M., Lovato, P., Brender, C., Eriksen, K. W., Woetmann, Anders , Kaestel, C. G., Nissen, Mogens Holst, Ropke, C., Skov, Søren & Ødum, Niels, 2004, In: Leukemia. 18, 7, p. 1288-95 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Morphology and genome organisation of the virus PSV of the hyperthermophilic archaeal genera Pyrobaculum and Thermoproteus: A novel virus family, the Globuloviridae

    Häring , M., Peng, Xu & Brugger K., Rachel R., Stetter K.O., Garrett R.A.,Prangishvili D., B. K. ,. R. R. ,. S. K. O. ,. G. R. A. ,. D., 2004, In: Virology.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    The fission yeast heterochromatin protein Rik1 is required for telomere clustering during meiosis

    Tuzon, C. T., Borgstrøm, B., Weilguny, D., Egel, Richard, Cooper, J. P. & Nielsen, Olaf, 2004, In: Journal of Cell Biology. 165, 6, p. 759-65 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    The Transducer Domain Is Important for Clamp Operation in Human DNA Topoisomerase IIα

    Østergaard, Vibe Hallundbæk, Bjergbaek, L., Skouboe, C., Giangiacomo, L., Knudsen, B. R. & Andersen, A. H., 16 Jan 2004, In: Journal of Biological Chemistry. 279, 3, p. 1684-1691 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    DNA repair

    Fleck, O. & Nielsen, Olaf, 1 Feb 2004, In: Journal of Cell Science. 117, Pt 4, p. 515-7 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Key role of Ser562/661 in Snf1-dependent regulation of Cat8p in Saccharomyces cerevisiae and Kluyveromyces lactis

    Charbon, Godefroid, Breunig, K. D., Wattiez, R., Vandenhaute, J. & Noël-Georis, I., May 2004, In: Molecular and Cellular Biology. 24, 10, p. 4083-91 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    DNA damage checkpoint and repair centers

    Lisby, Michael & Rothstein, R., Jun 2004, In: Current Opinion in Cell Biology. 16, 3, p. 328-34 7 p.

    Research output: Contribution to journal › Review › Research › peer-review

  49. Published

    Transcriptional profiling of extracellular amino acid sensing in Saccharomyces cerevisiae and the role of Stp 1 p and Stp2p

    Eckert-Boulet, N., Nielsen, P. S., Friis, Carsten, Moreira dos Santos, M., Nielsen, J., Kielland-Brandt, M. C. & Regenberg, Birgitte, 1 Jun 2004, In: Yeast. 21, 8, p. 635-648 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Dissecting the cell-killing mechanism of the topoisomerase II-targeting drug ICRF-193

    Østergaard, Vibe Hallundbæk, Knudsen, B. R. & Andersen, A. H., 2 Jul 2004, In: Journal of Biological Chemistry. 279, 27, p. 28100-28105 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Hindering the strand passage reaction of human topoisomerase IIα without disturbing DNA cleavage, ATP hydrolysis, or the operation of the N-terminal clamp

    Østergaard, Vibe Hallundbæk, Giangiacomo, L., Bjergbaek, L., Knudsen, B. R. & Andersen, A. H., 2 Jul 2004, In: Journal of Biological Chemistry. 279, 27, p. 28093-28099 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Choreography of the DNA damage response: spatiotemporal relationships among checkpoint and repair proteins

    Lisby, Michael, Barlow, J. H., Burgess, R. C. & Rothstein, R., 17 Sep 2004, In: Cell. 118, 6, p. 699-713 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. 2005
  54. Published

    A novel rudivirus, ARV1, of the hyperthermophilic archaeal genus Acidianus

    Vestergaard, G. A., Häring, M., Peng, Xu, Rachel, R., Garrett, Roger Antony & Prangishvili, D., 2005, In: Virology. 336, 1, p. 83-92 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    Beringian paleoecology inferred from permafrost-preserved fungal DNA

    Lydolph, M. C., Jacobsen, J., Arctander, P., Gilbert, M Thomas P, Gilichinsky, D. A., Hansen, Anders Johannes, Willerslev, Eske & Lange, L., 2005, In: Applied and Environmental Microbiology. 71, 2, p. 1012-7 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Brh2-Dss1 interplay enables properly controlled recombination in Ustilago maydis.

    Kojic, M., Zhou, Q., Lisby, Michael & Holloman, W. K., 2005, In: Molecular and Cellular Biology. 25, 7, p. 2547-57 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    Cancer cells become susceptible to natural killer cell killing after exposure to histone deacetylase inhibitors due to glycogen synthase kinase-3-dependent expression of MHC class I-related chain A and B

    Skov, Søren, Pedersen, M. T., Andresen, Lars, Straten, P. T., Woetmann, Anders & Ødum, Niels, 2005, In: Cancer Research. 65, 23, p. 11136-45 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    Conditional E2F1 activation in transgenic mice causes testicular atrophy and dysplasia mimicking human CIS.

    Agger, K., Santoni Rugiu, Eric, Holmberg, Christian, Karlström, O. & Helin, K., 2005, In: Oncogene. 24, 5, p. 780-9 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    Constitutive SOCS-3 expression protects T-cell lymphoma against growth inhibition by IFNalpha

    Brender, C., Lovato, P., Sommer, V. H., Woetmann, Anders , Mathiesen, A., Geisler, Carsten, Wasik, M. & Ødum, Niels, 2005, In: Leukemia. 19, 2, p. 209-13 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.

    Siepel, A., Bejerano, G., Pedersen, Jakob Skou, Hinrichs, A. S., Hou, M., Rosenbloom, K., Clawson, H., Spieth, J., Hillier, L. W., Richards, S., Weinstock, G. M., Wilson, R. K., Gibbs, R. A., Kent, W. J., Miller, W. & Haussler, D., 2005, In: Genome Research. 15, 8, p. 1034-50 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    Structure and genome organization of AFV2, a novel archaeal lipothrixvirus with unusual terminal and core structures

    Häring, M., Vestergaard, G. A., Brügger, K., Rachel, R., Garrett, Roger Antony & Prangishvili, D., 2005, In: Journal of Bacteriology. 187, 11, p. 3855-8 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    The 3' region of human papillomavirus type 16 early mRNAs decrease expression

    Vinther, Jeppe, Rosenstierne, M. W., Kristiansen, K. & Norrild, B., 2005, In: BMC Infectious Diseases. 5, p. 83

    Research output: Contribution to journal › Journal article › Research › peer-review

  63. Published

    The MAP kinase substrate MKS1 is a regulator of plant defense responses.

    Andreasson, E., Jenkins, T., Brodersen, P., Thorgrimsen, S., Petersen, N. H. T., Zhu, S., Qiu, J., Micheelsen, P., Rocher, A., Petersen, Morten, Newman, Mari-Anne, Bjørn Nielsen, H., Hirt, H., Somssich, I., Mattsson, O. & Mundy, J., 2005, In: EMBO Journal. 24, 14, p. 2579-89 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    The role of salicylic acid in the induction of cell death in Arabidopsis acd11

    Brodersen, K. P., Malinovsky, F. G., Hématy, K., Newman, Mari-Anne & Mundy, J., 2005, In: Plant Physiology. 138, 2, p. 1037-1045 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    Virology: Independent virus development outside a host

    Häring, M., Vestergaard, G. A., Rachel, R., Chen, L., Garrett, Roger Antony & Prangishvili, D., 2005, In: Nature. 436, 7054, p. 1101-1102

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    Grr1p is required for transcriptional induction of amino acid permease genes and proper transcriptional regulation of genes in carbon metabolism of Saccharomyces cerevisiae

    Eckert-Boulet, N., Regenberg, Birgitte & Nielsen, J., 1 Mar 2005, In: Current Genetics. 47, 3, p. 139-149 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    Myocardial perfusion defects and the left ventricular ejection fraction disclosed by scintigraphy in patients with primary hyperparathyroidism

    Ogard, C. G., Søndergaard, S. B., drb459, drb459, Jakobsen, H., Nielsen, S. L. & drb459, drb459, Jul 2005, In: World Journal of Surgery. 29, 7, p. 914-6 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    Neuropsychological assessment of chronic non-malignant pain patients treated in a multidisciplinary pain centre

    Sjøgren, P., Christrup, Lona Louring, Petersen, Morten & Højsted, J., Aug 2005, In: European Journal of Pain. 9, 4, p. 453-62 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. 2006
  70. Published

    A putative flavin-containing mono-oxygenase as a marker for certain defense and cell death pathways

    Olszak, B., Malinovsky, F. G., Brodersen, P., Grell, M., Giese, H., Petersen, Morten & Mundy, J., 2006, In: Plant Science. 170, 3, p. 614-623

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    A putative viral defence mechanism in archaeal cells

    Lillestøl, R. K., Redder, P., Garrett, Roger Antony & Brügger, K., 2006, In: Archaea. 2, 1, p. 59-72 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    An RNA gene expressed during cortical development evolved rapidly in humans.

    Pollard, K. S., Salama, S. R., Lambert, N., Lambot, M., Coppens, S., Pedersen, Jakob Skou, Katzman, S., King, B., Onodera, C., Siepel, A., Kern, A. D., Dehay, C., Igel, H., Ares, M., Vanderhaeghen, P. & Haussler, D., 2006, In: Nature. 443, 7108, p. 167-72 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Arabidopsis MAP kinase 4 regulates salicylic acid- and jasmonic acid/ethylene-dependent responses via EDS1 and PAD4

    Brodersen, K. P., Petersen, Morten, Nielsen, H. B., Zhu, S., Newman, Mari-Anne, Shokat, K. M., Rietz, S., Parker, J. & Mundy, J., 2006, In: Plant Journal. 47, 4, p. 532-546 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    Crystallization and preliminary X-ray diffraction analysis of protein 14 from Sulfolobus islandicus filamentous virus (SIFV)

    Goulet, A., Spinelli, S., Campanacci, V., Porciero, S., Blangy, S., Garrett, Roger Antony, van Tilbeurgh, H., Leulliot, N., Basta, T., Prangishvili, D. & Cambillau, C., 2006, In: Acta Crystallographica. Section F : Structural Biology and Crystallization Communications. 62, Pt 9, p. 884-886 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    Dynamic usage of transcription start sites within core promoters.

    Kawaji, H., Frith, M. C., Katayama, S., Sandelin, Albin Gustav, Kai, C., Kawai, J., Carninci, P. & Hayashizaki, Y., 2006, In: Genome Biology. 7, 12, p. R118

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    Forces shaping the fastest evolving regions in the human genome.

    Pollard, K. S., Salama, S. R., King, B., Kern, A. D., Dreszer, T., Katzman, S., Siepel, A., Pedersen, Jakob Skou, Bejerano, G., Baertsch, R., Rosenbloom, K. R., Kent, J. & Haussler, D., 2006, In: PLoS Genetics. 2, 10, p. e168

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Genome-wide occupancy profile of mediator and the Srb8-11 module reveals interactions with coding regions

    Zhu, X., Wirén, M., Sinha, I., Rasmussen, N. N., Linder, T., Holmberg, Steen, Ekwall, K. & Gustafsson, C. M., 2006, In: Molecular Cell. 22, 2, p. 169-78 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    How to induce non-polarized cells of hepatic origin to express typical hepatocyte polarity: generation of new highly polarized cell models with developed and functional bile canaliculi

    Peng, Xu & Grosse B, Le Tiec B, Nicolas V, Delagebeaudeuf C, Bedda T, Decaens C, Cassio D, G. B. L. T. B. N. V. D. C. B. T. D. C. C. D., 2006, In: Cell and Tissue Research.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    Hybridization between subspecies of waterbuck (Kobus ellipsiprymnus) in zones of overlap with limited introgression

    Lorenzen, Eline, Simonsen, Bo Thisted, Kat, P. W., Arctander, P. & Siegismund, Hans Redlef, 2006, In: Molecular Ecology. 15, 12, p. 3787-99 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    Identification and classification of conserved RNA secondary structures in the human genome.

    Pedersen, Jakob Skou, Bejerano, G., Siepel, A., Rosenbloom, K., Lindblad-Toh, K., Lander, E. S., Kent, J., Miller, W. & Haussler, D., 2006, In: PLoS Computational Biology. 2, 4, p. e33

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Identification of miRNA targets with stable isotope labeling by amino acids in cell culture.

    Vinther, Jeppe, Hedegaard, M. M., Gardner, P. P., Andersen, J. S. & Arctander, P., 2006, In: Nucleic Acids Research. 34, 16, p. e107

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Inducible cell death in plant immunity.

    Hofius, D., Tsitsigiannis, D. I., Jones, J. D. G. & Mundy, J., 2006, In: Seminars in Cancer Biology. 17, 2, p. 166-87 21 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    JAFA: a protein function annotation meta-server.

    Friedberg, I., Harder, T. & Godzik, A., 2006, In: Nucleic Acids Research. 34, Web Server issue, p. W379-81

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    Jak3- and JNK-dependent vascular endothelial growth factor expression in cutaneous T-cell lymphoma

    Krejsgaard, T., Vetter-Kauczok, C. S., Woetmann, Anders , Lovato, P., Labuda, T., Eriksen, K. W., Zhang, Q., Becker, J. C. & Ødum, Niels, 2006, In: Leukemia. 20, 10, p. 1759-66 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    Novel overlapping coding sequences in Chlamydia trachomatis

    Jensen, K. T., Petersen, L., Falk, S., Iversen, P., Andersen, P., Theisen, Michael & Krogh, Anders, 2006, In: FEMS Microbiology Reviews. 265, 1, p. 106-17

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    RNA-binding IMPs promote cell adhesion and invadopodia formation.

    Vikesaa, J., Hansen, T. V. O., Jønson, L., Borup, R., Wewer, Ulla M., Christiansen, Jan & Nielsen, Finn Cilius, 2006, In: EMBO Journal. 25, 7, p. 1456-68 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    STAT3 induces transcription of the DNA methyltransferase 1 gene (DNMT1) in malignant T lymphocytes

    Zhang, Q., Wang, H. Y., Woetmann, Anders , Raghunath, P. N., Ødum, Niels & Wasik, M. A., 2006, In: Blood. 108, 3, p. 1058-64 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    Spironolactone induces apoptosis and inhibits NF-kappaB independent of the mineralocorticoid receptor

    Sønder, S. U. S., Woetmann, Anders , Ødum, Niels & Bendtzen, K., 2006, In: Apoptosis. 11, 12, p. 2159-65 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    Structural and genomic properties of the hyperthermophilic archaeal virus ATV with an extracellular stage of the reproductive cycle

    Prangishvili, D., Vestergaard, G. A., Häring, M., Aramayo, R., Basta, T., Rachel, R. & Garrett, Roger Antony, 2006, In: Journal of Molecular Biology. 359, 5, p. 1203-1216 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    Sulfolobus genomes: mechanisms of rearrangement and change

    Brügger, K., Peng, Xu & Garrett, Roger Antony, 2006, Archaea: Evolution, physiology and Molecular Biolog.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  91. Published

    The UCSC Genome Browser Database: update 2006.

    Hinrichs, A. S., Karolchik, D., Baertsch, R., Barber, G. P., Bejerano, G., Clawson, H., Diekhans, M., Furey, T. S., Harte, R. A., Hsu, F., Hillman-Jackson, J., Kuhn, R. M., Pedersen, J. S., Pohl, A., Raney, B. J., Rosenbloom, K. R., Siepel, A., Smith, K. E., Sugnet, C. W., Sultan-Qurraie, A. & 7 others, Thomas, D. J., Trumbower, H., Weber, R. J., Weirauch, M., Zweig, A. S., Haussler, D. & Kent, W. J., 2006, In: Nucleic Acids Research. 34, Database issue, p. D590-8

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    The UCSC genome browser database: update 2007.

    Kuhn, R. M., Karolchik, D., Zweig, A. S., Trumbower, H., Thomas, D. J., Thakkapallayil, A., Sugnet, C. W., Stanke, M., Smith, K. E., Siepel, A., Rosenbloom, K. R., Rhead, B., Raney, B. J., Pohl, A., Pedersen, J. S., Hsu, F., Hinrichs, A. S., Harte, R. A., Diekhans, M., Clawson, H. & 5 others, Bejerano, G., Barber, G. P., Baertsch, R., Haussler, D. & Kent, W. J., 2006, In: Nucleic Acids Research. 35, Database issue, p. D668-73

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    The cyclin-dependent kinase 8 module sterically blocks Mediator interactions with RNA polymerase II

    Elmlund, H., Baraznenok, V., Lindahl, M., Samuelsen, C. O., Koeck, P. J. B., Holmberg, Steen, Hebert, H. & Gustafsson, C. M., 2006, In: Proceedings of the National Academy of Science of the United States of America. 103, 43, p. 15788-93 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    Three genetically divergent lineages of the Oryx in eastern Africa: Evidence for an ancient introgressive hybridization

    Masembe, C., Muwanika, V. B., Nyakaana, S., Arctander, P. & Siegismund, Hans Redlef, 2006, In: Conservation Genetics. 7, 4, p. 551-562

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    Actin homolog MreB and RNA polymerase interact and are both required for chromosome segregation in Escherichia coli

    Kruse, Thomas, Blagoev, B., Løbner-Olesen, Anders, Wachi, M., Sasaki, K., Iwai, N., Mann, Matthias & Gerdes, K., 1 Jan 2006, In: Genes & Development. 20, 1, p. 113-124 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Mediastinalt parathyroideacysteadenom--en sjaelden årsag til primaer hyperparatyroidisme

    Øgard, C. G., Nielsen, S. L., Jakobsen, H., Leth-Espensen, P., drb459, drb459 & drb459, drb459, 28 Aug 2006, In: Ugeskrift for Laeger. 168, 35, p. 2921-2 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    RAD18-independent ubiquitination of proliferating-cell nuclear antigen in the avian cell line DT40

    Simpson, L. J., Ross, A. L., Szüts, D., Alviani, C. A., Østergaard, Vibe Hallundbæk, Patel, K. J. & Sale, J. E., 1 Sep 2006, In: EMBO Reports. 7, 9, p. 927-932 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    The role of DNA double-strand breaks in spontaneous homologous recombination in S. cerevisiae

    Lettier, G., Feng, Q., De Mayolo, A. A., Erdeniz, N., Reid, R. J. D., Lisby, Michael, Mortensen, U. H. & Rothstein, R., Nov 2006, In: PLOS Genetics. 2, 11, p. 1773-1786 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Viruses of the Archaea: a unifying view

    Prangishvili, D., Forterre, P. & Garrett, Roger Antony, 1 Nov 2006, In: Nature Reviews. Microbiology. 4, 11, p. 837-48 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. 2007
  101. Published

    A novel Sulfolobus non-conjugative extrachromosomal genetic element capable of integration into the host genome and spreading in the presence of a fusellovirus

    Wang, Y., Duan, Z., Zhu, H., Guo, X., Wang, Z., Zhou, J., She, Q. & Huang, L., 2007, In: Virology. 363, 1, p. 124-33 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  102. Published

    Anaphase onset before complete DNA replication with intact checkpoint responses.

    Torres-Rosell, J., De Piccoli, G., Cordon-Preciado, V., Farmer, S., Jarmuz, A., Machin, F., Pasero, P., Lisby, Michael, Haber, J. E. & Aragón, L., 2007, In: Science. 315, 5817, p. 1411-5 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  103. Published

    Cdk phosphorylation of the Ste11 transcription factor constrains differentiation-specific transcription to G1.

    Kjaerulff, S., Andersen, N. R., Borup, M. T. & Nielsen, Olaf, 2007, In: Genes & Development. 21, 3, p. 347-59 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  104. Published

    Cholecystokinin-2 receptor mediated gene expression in neuronal PC12 cells

    Hansen, T. V. O., Borup, R., Marstrand, T., Rehfeld, Jens Frederik & Nielsen, Finn Cilius, 2007, In: Journal of Neurochemistry. 104, 6, p. 1450-65 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  105. Published

    Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures.

    Stark, A., Lin, M. F., Kheradpour, P., Pedersen, J. S., Parts, L., Carlson, J. W., Crosby, M. A., Rasmussen, M. D., Roy, S., Deoras, A. N., Ruby, J. G., Brennecke, J., Harvard FlyBase curators, Berkeley Drosophila Genome Project, Hodges, E., Hinrichs, A. S., Caspi, A., Paten, B., Park, S-W., Han, M. V. & 26 others, Maeder, M. L., Polansky, B. J., Robson, B. E., Aerts, S., van Helden, J., Hassan, B., Gilbert, D. G., Eastman, D. A., Rice, M., Weir, M., Hahn, M. W., Park, Y., Dewey, C. N., Pachter, L., Kent, W. J., Haussler, D., Lai, E. C., Bartel, D. P., Hannon, G. J., Kaufman, T. C., Eisen, M. B., Clark, A. G., Smith, D., Celniker, S. E., Gelbart, W. M. & Kellis, M., 2007, In: Nature. 450, 7167, p. 219-32 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  106. Published

    Drosophila deoxyribonucleoside kinase mutants with enhanced ability to phosphorylate purine analogs

    Knecht, W., Rozpedowska, E., Breton, C. L., Willer, M., Gojkovic, Z., Sandrini, M. P. B., Jørgensen, T., Hasholt, Lis Frydenreich, Munch-Petersen, B. & Piskur, J., 2007, In: Gene Therapy. 14, 17, p. 1278-1286 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  107. Published

    Dss1 interaction with Brh2 as a regulatory mechanism for recombinational repair.

    Zhou, Q., Kojic, M., Cao, Z., Lisby, Michael, Mazloum, N. A. & Holloman, W. K., 2007, In: Molecular and Cellular Biology. 27, 7, p. 2512-26 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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