Functional Genomics

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  1. Published

    Analysis of Escherichia coli mutants with altered DNA content

    Trun, N. J., Gottesman, S. & Løbner-Olesen, Anders, 1991, In: Cold Spring Harbor Symposia on Quantitative Biology. 56, p. 353-8 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Analysis of RNA metabolism in fission yeast

    Wise, J. A. & Nielsen, Olaf, May 2017, In: Cold Spring Harbor Protocols. 2017, 5, p. 365-372 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Analysis of Schizosaccharomyces pombe mediator reveals a set of essential subunits conserved between yeast and metazoan cells

    Spåhr, H., Samuelsen, C. O., Baraznenok, V., Ernest, I., Huylebroeck, D., Remacle, J. E., Samuelsson, T., Kieselbach, T., Holmberg, Steen & Gustafsson, C. M., 2001, In: Proceedings of the National Academy of Science of the United States of America. 98, 21, p. 11985-11990 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Analysis of heterochromatin dynamics in Schizosaccharomyces pombe: With a special focus on the role of the replication factor Mrc1/Claspin in maintenance of epigenetic silencing

    Charlton, Sebastian Jespersen, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 138 p.

    Research output: Book/Report › Ph.D. thesis › Research

  5. Published

    Analysis of the structural genes encoding M-factor in the fission yeast Schizosaccharomyces pombe: identification of a third gene, mfm3

    Kjaerulff, S., Davey, W. J., Nielsen, O. & Nielsen, Olaf, 1 Jun 1994, In: Molecular and Cellular Biology. 14, 6, p. 3895-905 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Anaphase onset before complete DNA replication with intact checkpoint responses.

    Torres-Rosell, J., De Piccoli, G., Cordon-Preciado, V., Farmer, S., Jarmuz, A., Machin, F., Pasero, P., Lisby, Michael, Haber, J. E. & Aragón, L., 2007, In: Science. 315, 5817, p. 1411-5 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Ancient DNA reveals late survival of mammoth and horse in interior Alaska

    Haile, James Seymour, Froese, D. G., Macphee, R. D. E., Roberts, R. G., Arnold, L. J., Reyes, A. V., Rasmussen, M., Nielsen, Rasmus, Brook, B. W., Robinson, S., Demuro, M., Gilbert, M Thomas P, Munch, K., Austin, J. J., Cooper, A., Barnes, I., Möller, P. & Willerslev, Eske, 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 52, p. 22352-7 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Anti-CRISPR Proteins in Archaea

    Peng, Xu, Mayo-Muñoz, D., Bhoobalan, Yuvaraj & Martinez Alvarez, Laura, 2020, In: Trends in Microbiology. 28, 11, p. 913-921 9 p.

    Research output: Contribution to journal › Review › Research › peer-review

  9. Published

    Anti-CRISPR proteins encoded by archaeal lytic viruses inhibit subtype I-D immunity

    He, F., Bhoobalan, Yuvaraj, Van, L. B., Kjeldsen, A. L., Dedola, M., Makarova, K. S., Koonin, E. V., Brodersen, D. E. & Peng, Xu, 2018, In: Nature Microbiology. 3, 4, p. 461-469 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Anti-CRISPR-Based and CRISPR-Based Genome Editing of Sulfolobus islandicus Rod-Shaped Virus 2

    Mayo-Muñoz, D., He, F., Jørgensen, J. B., Madsen, P. K., Bhoobalan, Yuvaraj & Peng, Xu, 2018, In: Viruses. 10, 12, p. 1-17 695.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Antibacterial mechanisms of GN-2 derived peptides and peptoids against Escherichia coli

    Saporito, P., Biljana, M., Løbner-Olesen, Anders & Jenssen, H., 2019, In: Biopolymers. 110, 6, 9 p., e23275.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Antibiotic Tolerance and Persistence Studied Throughout Bacterial Growth Phases

    Maffei, E., Fino, C. & Harms, A., 2021, Bacterial Persistence: Methods and Protocols. Verstraeten, N. & Michiels, J. (eds.). 2. ed. ed. Humana Press, p. 23-40 18 p. (Methods in Molecular Biology, Vol. 2357).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  13. Published

    Antibiotic selection of Escherichia coli sequence type 131 in a mouse intestinal colonization model

    Hertz, F. B., Løbner-Olesen, Anders & Frimodt-Møller, N., 2014, In: Antimicrobial Agents and Chemotherapy. 58, 10, p. 6139-6144 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Antigenic diversity by the recombination of pseudogenes

    Thon, Genevieve, Baltz, T. & Eisen, H., 1989, In: Genes & Development. 3, 8, p. 1247-1254 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Antimicrobial and Antivirulence Action of Eugenia brejoensis Essential Oil in vitro and in vivo Invertebrate Models

    Filho, C. M. B., da Silva, L. C. N., da Silva, M. V., Løbner-Olesen, Anders, Struve, C., Krogfelt, K. A., Correia, M. T. D. S. & Oliva, M. L. V., 2020, In: Frontiers in Microbiology. 11, 11 p., 424.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Antisense inhibition of the Escherichia coli NrdAB aerobic ribonucleotide reductase is bactericidal due to induction of DNA strand breaks

    Campion, C., Charbon, Godefroid, Thomsen, T. T., Nielsen, Peter E. & Løbner-Olesen, Anders, 2021, In: Journal of Antimicrobial Chemotherapy. 76, 11, p. 2802–2814 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Arabidopsis ATP A2 peroxidase. Expression and high-resolution structure of a plant peroxidase with implications for lignification.

    Ostergaard, L., Teilum, Kaare, Mirza, Osman Asghar, Mattsson, O., Petersen, M., Welinder, K. G., Mundy, J., Gajhede, Michael & Henriksen, A., 2000, In: Plant Molecular Biology. 44, 2, p. 231-43 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Arabidopsis ATP A2 peroxidase. Expression and high-resolution structure of a plant peroxidase with implications for lignification.

    Petersen, Morten, Sep 2000, In: Plant Molecular Biology.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Arabidopsis MAP kinase 4 regulates salicylic acid- and jasmonic acid/ethylene-dependent responses via EDS1 and PAD4

    Brodersen, K. P., Petersen, Morten, Nielsen, H. B., Zhu, S., Newman, Mari-Anne, Shokat, K. M., Rietz, S., Parker, J. & Mundy, J., 2006, In: Plant Journal. 47, 4, p. 532-546 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Arabidopsis MKS1 is involved in basal immunity and requires an intact N-terminal domain for proper function

    Petersen, K., Qiu, J., Lütje, J., Fiil, Berthe Katrine, Hansen, S., Mundy, J. & Petersen, Morten, 1 Jan 2010, In: P L o S One. 5, 12, p. e14364

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Arabidopsis accelerated cell death 11, ACD11, is a ceramide-1-phosphate transfer protein and intermediary regulator of phytoceramide levels

    Simanshu, D. K., Zhai, X., Munch, D., Hofius, D., Markham, J. E., Bielawski, J., Bielawska, A., Malinina, L., Molotkovsky, J. G., Mundy, J. W., Patel, D. J. & Brown, R. E., 2014, In: Cell Reports. 6, 2, p. 388-399 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Archaea and CRISPR biology

    She, Q. & Han, W., 17 Aug 2017, In: Microbiology Today. 44, 3, p. 122-125 4 p.

    Research output: Contribution to journal › Journal article › Communication

  23. Published

    Archaeal CRISPR-based immune systems: exchangeable functional modules

    Garrett, Roger Antony, Vestergaard, G. A. & Shah, S. A., 2011, In: Trends in Microbiology. 19, 11, p. 549-56 8 p.

    Research output: Contribution to journal › Review › Research › peer-review

  24. Published

    Archaeal Viruses and Their Interactions with CRISPR-Cas Systems

    Garrett, Roger Antony, Shah, S. A., Martinez Alvarez, Laura & Peng, Xu, 2020, Biocommunication of Phages. 1 ed. Springer, p. 199-220 22 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  25. Published

    Archaeal extrachromosomal genetic elements

    Wang, H., Peng, N., Shah, S. A., Huang, L. & She, Q., 2015, In: Microbiology and Molecular Biology Reviews. 79, 1, p. 117-152 36 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Archaeal physiology: the secrets of termination

    Garrett, Roger Antony, 2016, In: Nature Microbiology. 1, 2 p., 16159.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Archaeal promoter architecture and mechanism of gene activation

    Peng, N., Ao, X., Liang, Y. X. & She, Q., 19 Jan 2011, In: Biochemical Society Transactions. 39, 1, p. 99-103 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Archaeal rRNA operons, intron splicing and homing endonucleases, RNA polymerase operons and phylogeny

    Garrett, Roger Antony, Aagaard, C. S., Andersen, M., Dalgaard, J., Lykke-Andersen, J., Phan, H. T. N., Trevisanato, S., Østergaard, L., Larsen, N. & Leffers, H., 1994, In: Systematic and Applied Microbiology. 16, 4, p. 680-691

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Archaeal type II toxin-antitoxins

    Shah, S. A. & Garrett, Roger Antony, 2013, Prokaryotic toxin-antitoxins. Gerdes, K. (ed.). Springer, p. 225-238 14 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  30. Published

    Archaeal viruses of the sulfolobales: isolation, infection, and CRISPR spacer acquisition

    Erdmann, S. & Garrett, Roger Antony, 2015, CRISPR: methods and protocols. Lundgren, M., Charpentier, E. & Fineran, P. C. (eds.). Springer, p. 223-232 10 p. (Methods in Molecular Biology, Vol. 1311).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  31. Published

    Archaeal viruses-novel, diverse and enigmatic

    Peng, Xu, Garrett, Roger Antony & She, Q., 2012, In: Science China Life Sciences. 55, 5, p. 422-433 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Arresting chromosome replication upon energy starvation in Escherichia coli

    Charbon, Godefroid, Frimodt-Møller, Jakob & Løbner-Olesen, Anders, 2021, In: Current Genetics. 67, 6, p. 877-882 6 p.

    Research output: Contribution to journal › Review › Research › peer-review

  33. Published

    Aspects of ribonucleotide reductase regulation and genome stability: a study of human ribonucleotide reductase ssing fission yeast as a model

    Nielsen, H. B. N., 2014, Department of Biology, Faculty of Science, University of Copenhagen. 149 p.

    Research output: Book/Report › Ph.D. thesis › Research

  34. Published

    Assessment of pheromone production and response in fission yeast by a halo test of induced sporulation

    Egel, Richard, Willer, M., Kjaerulff, S., Davey, W. J., Nielsen, O. & Nielsen, Olaf, 1 Oct 1994, In: Yeast. 10, 10, p. 1347-54 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Attachment sites of primary binding proteins L1, L2 and L23 on 23 S ribosomal RNA of Escherichia coli

    Egebjerg, J., Christiansen, Jan & Garrett, Roger Antony, 1991, In: Journal of Molecular Biology. 222, 2, p. 251-264

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Autoimmunity in Arabidopsis acd11 is mediated by epigenetic regulation of an immune receptor

    Palma, K., Thorgrimsen, S., Malinovsky, F. G., Fiil, Berthe Katrine, Nielsen, H. B., Brodersen, P., Hofius, D., Petersen, Morten & Mundy, J., 1 Jan 2010, In: P L o S Pathogens. 6, 10

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Autoimmunity in Plants: Guards with a License to Kill

    Thorgrimsen, S. P., 2009, Copenhagen University. Department of Biology: Museum Tusculanum. 91 p.

    Research output: Book/Report › Ph.D. thesis › Research

  38. Published

    Autophagic components contribute to hypersensitive cell death in Arabidopsis

    Hofius, D., Schultz-Larsen, T., Joensen, J., Tsitsigiannis, D. I., Petersen, N. H. T., Mattsson, O., Jørgensen, L. B., Jones, J. D. G., Mundy, J. & Petersen, Morten, 2009, In: Cell. 137, 4, p. 773-83 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Autophagy and Retromer Components in Plant Innate Immunity

    Munch, D., 2014, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  40. Published

    Autophagy deficiency leads to accumulation of ubiquitinated proteins, ER stress, and cell death in Arabidopsis

    Munch, D., Rodriguez, E., Bressendorff, Simon, Park, O. K., Hofius, D. & Petersen, Morten, 2014, In: Autophagy. 10, 9, p. 1579-1587 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Autophagy is required for gamete differentiation in the moss Physcomitrella patens

    Sanchez-Vera, V., Kenchappa, C. S., Landberg, K., Bressendorff, Simon, Schwarzbach, S., Martin, T., Mundy, J., Petersen, Morten, Thelander, M. & Sundberg, E., 2017, In: Autophagy. 13, 11, p. 1939-1951 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Autophagy mediate cellular reprogramming

    Chevalier, J. R., 2020, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  43. Published

    Autophagy mediates temporary reprogramming and dedifferentiation in plant somatic cells

    Rodriguez, Eleazar, Chevalier, J., Olsen, J., Ansbøl, J., Kapousidou, V., Zuo, Zhangli Thomsen, Svenning, S., Loefke, C., Koemeda, S., Drozdowskyj, P. S., Jez, J., Durnberger, G., Kuenzl, F., Schutzbier, M., Mechtler, K., Ebstrup, E. N., Lolle, S., Dagdas, Y. & Petersen, Morten, 2020, In: EMBO Journal. 39, 4, 11 p., e103315.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Back to the roots: deep view into the evolutionary history of ADP-ribosylation opened by the DNA-targeting toxin-antitoxin module DarTG

    Harms, A. & Gerdes, K., 15 Dec 2016, In: Molecular Cell. 64, 6, p. 1020-1021 2 p.

    Research output: Contribution to journal › Comment/debate › Research

  45. Published

    Bacterial Chromosome Replication and DNA Repair During the Stringent Response

    Sinha, A. K., Løbner-Olesen, Anders & Riber, Leise, 2020, In: Frontiers in Microbiology. 11, 9 p., 582113.

    Research output: Contribution to journal › Review › Research › peer-review

  46. Published

    Bacterial Viruses Subcommittee and Archaeal Viruses Subcommittee of the ICTV: update of taxonomy changes in 2021

    Krupovic, M., Turner, D., Morozova, V., Dyall-Smith, M., Oksanen, H. M., Edwards, R., Dutilh, B. E., Lehman, S. M., Reyes, A., Baquero, D. P., Sullivan, M. B., Uchiyama, J., Nakavuma, J., Barylski, J., Young, M. J., Du, S., Alfenas-Zerbini, P., Kushkina, A., Kropinski, A. M., Kurtböke, I. & 29 others, Brister, J. R., Lood, C., Sarkar, B. L., Yigang, T., Liu, Y., Huang, L., Wittmann, J., Chanishvili, N., van Zyl, L. J., Rumnieks, J., Mochizuki, T., Jalasvuori, M., Aziz, R. K., Łobocka, M., Stedman, K. M., Shkoporov, A. N., Gillis, A., Peng, Xu, Enault, F., Knezevic, P., Lavigne, R., Rhee, S. K., Cvirkaite-Krupovic, V., Moraru, C., Moreno Switt, A. I., Poranen, M. M., Millard, A., Prangishvili, D. & Adriaenssens, E. M., 2021, In: Archives of Virology. 166, 11, p. 3239-3244 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Bacterial chromosomes and their replication

    Frimodt-Møller, Jakob, Boesen, Thias Oberg, Charbon, Godefroid & Løbner-Olesen, Anders, 2024, Molecular Medical Microbiology. Tang, Y-W., Hindiyeh, M. Y., Liu, D., Sails, A., Spearman, P. & Zhang, J-R. (eds.). 3 ed. Academic Press, Vol. 1. p. 279-307 29 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  48. Published

    Bacterial growth control studied by flow cytometry

    Boye, E. & Løbner-Olesen, Anders, 1 Feb 1991, In: Research in Microbiology. 142, 2-3, p. 131-5 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Bactericidal antibiotics increase hydroxyphenyl fluorescein signal by altering cell morphology

    Paulander, W., Wang, Y., Folkesson, A., Charbon, Godefroid, Løbner-Olesen, Anders & Ingmer, Hanne, 2014, In: P L o S One. 9, 3, 4 p., e92231.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Barley plants over-expressing the NAC transcription factor gene HvNAC005 show stunting and delay in development combined with early senescence

    Christiansen, M. W., Matthewman, C., Podzimska-Sroka, D. A., O'Shea, Charlotte, Lindemose, Søren, Møllegaard, Niels Erik, Holme, I. B., Hebelstrup, K., Skriver, Karen & Gregersen, P. L., 2016, In: Journal of Experimental Botany. 67, 17, p. 5259-5273 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Basal level of ppGpp coordinates Escherichia coli cell heterogeneity and ampicillin resistance and persistence

    Grucela, Paulina Katarzyna & Zhang, Yong, 2023, In: Microbial Cell. 10, 11, p. 248-260 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    BayesMD: Flexible Biological Modeling for Motif Discovery

    Tang, M. E., Krogh, Anders & Winther, Ole, 2008, In: Journal of Computational Biology. 15, 10, p. 1347-63 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    Beringian paleoecology inferred from permafrost-preserved fungal DNA

    Lydolph, M. C., Jacobsen, J., Arctander, P., Gilbert, M Thomas P, Gilichinsky, D. A., Hansen, Anders Johannes, Willerslev, Eske & Lange, L., 2005, In: Applied and Environmental Microbiology. 71, 2, p. 1012-7 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Bi-phasic effect of interferon (IFN)-alpha: IFN-alpha up- and down-regulates interleukin-4 signaling in human T cells

    Eriksen, K. W., Sommer, V. H., Woetmann, Anders , Rasmussen, A. B., Brender, C., Svejgaard, A., Skov, Søren, Geisler, Carsten & Ødum, Niels, 2003, In: Journal of Biological Chemistry. 279, 1, p. 169-76 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    Biology, biodiversity and application potential of thermophilic viruses

    Uldahl, K. B. & Peng, Xu, 2013, Thermophilic Microbes in Environmental and Industrial Biotechnology: Biotechnology of Thermophiles. Satyanarayana, T., Littlechild, J. & Kawarabayasi, Y. (eds.). Springer, p. 271-304 34 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  56. Published

    Biosynthesis of 10 kDa and 7.5 kDa insulin-like growth factor II in a human rhabdomyosarcoma cell line

    Nielsen, F. C., Haselbacher, G., Christiansen, Jan, Lake, M., Gammeltoft, S. & Grønborg, M., 1993, In: Molecular and Cellular Endocrinology. 93, 1, p. 87-95 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    Biotin starvation causes mitochondrial protein hyperacetylation and partial rescue by the SIRT3-like deacetylase Hst4p

    Madsen, C. T., Sylvestersen, K. B., Young, C., Buch-Larsen, Sara Charlotte, Poulsen, J. W., Andersen, M. A., Palmqvist, E. A., Hey-Mogensen, M., Jensen, P. B., Treebak, Jonas Thue, Lisby, Michael & Nielsen, Michael Lund, 2015, In: Nature Communications. 6, 12 p., 7726.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    Bird and plant companion species predict breeding and migrant habitats of the genus Oenanthe

    Pentzold, S., Pentzold, C. & Randler, C., 2011, In: Journal of Ecology and Field Biology. 34, 3, p. 287-293 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    Birth and Resuscitation of (p)ppGpp Induced Antibiotic Tolerant Persister Cells

    Svenningsen, Mikkel Skjoldan, Veress, A., Harms, A., Mitarai, Namiko & Semsey, S., 15 Apr 2019, In: Scientific Reports. 9, 13 p., 6056.

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    Break-induced ATR and Ddb1-Cul4(Cdt)² ubiquitin ligase-dependent nucleotide synthesis promotes homologous recombination repair in fission yeast

    Moss, J., Tinline-Purvis, H., Walker, C. A., Folkes, L. K., Stratford, M. R., Hayles, J., Hoe, K., Kim, D., Park, H., Kearsey, S. E., Fleck, O., Holmberg, Christian, Nielsen, Olaf & Humphrey, T. C., 1 Dec 2010, In: Genes & Development. 24, 23, p. 2705-16 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    Brh2-Dss1 interplay enables properly controlled recombination in Ustilago maydis.

    Kojic, M., Zhou, Q., Lisby, Michael & Holloman, W. K., 2005, In: Molecular and Cellular Biology. 25, 7, p. 2547-57 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    C/EBPα is dispensable for the ontogeny of PD-1+ CD4+ memory T cells but restricts their expansion in an age-dependent manner

    Norrie, I. C., Ohlsson, E., Nielsen, Olaf, Hasemann, M. S. & Porse, Bo Torben, 2014, In: P L o S One. 9, 1, p. 1-9 9 p., e84728.

    Research output: Contribution to journal › Journal article › Research › peer-review

  63. Published

    C68 from the Sulfolobus islandicus plasmid-virus pSSVx is a novel member of the AbrB-like transcription factor family

    Contursi, P., D'Ambrosio, K., Pirone, L., Pedone, E., Aucelli, T., She, Q., De Simone, G. & Bartolucci, S., 2011, In: Biochemical Journal. 435, 1, p. 157-66 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    COP9 signalosome: a provider of DNA building blocks

    Nielsen, Olaf, 15 Jul 2003, In: Current Biology. 13, 14, p. R565-7

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    CRI-SPA: a high-throughput method for systematic genetic editing of yeast libraries

    Cachera, P., Olsson, H., Coumou, H., Jensen, M. L., Sánchez, B., Strucko, T., Van den broek, M., Daran, J., Jensen, M., Sonnenschein, N., Lisby, Michael & Mortensen, U., 2023, In: Nucleic acids symposium series. 51, 17, 14 p., e91.

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    CRISPR History: Discovery, Characterization, and Prosperity

    Han, W. & She, Q., 2017, CRISPR in Animals and Animal Models. Torres-Ruiz, R. & Rodriguez-Perales, S. (eds.). Elsevier, p. 1-21 20 p. (Progress in Molecular Biology and Translational Science, Vol. 152).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  67. Published

    CRISPR adaptive immune systems of Archaea

    Vestergaard, G. A., Garrett, Roger Antony & Shah, S. A., 2014, In: R N A Biology. 11, 2, p. 157-168 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties

    Lillestøl, R. K., Shah, S. A., Brügger, K., Redder, P., Phan, Safir Hien, Christiansen, Jan & Garrett, Roger Antony, 2009, In: Molecular Microbiology. 72, 1, p. 259-272

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. Published

    CRISPR-Cas adaptive immune systems of the sulfolobales: unravelling their complexity and diversity

    Garrett, Roger Antony, Shah, S. A., Erdmann, S., Guannan, L., Mousaei, M., León Sobrino, C., Peng, W., Islin, S. R., Deng, Ling, Vestergaard, G., Peng, Xu & She, Q., 2015, In: Life. 5, 1, p. 783-817 35 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids

    Pinilla Redondo, Rafael, Russel, J., Mayo-Muñoz, D., Shah, S. A., Garrett, Roger Antony, Nesme, Joseph, Madsen, Jonas Stenløkke, Fineran, P. C. & Sørensen, Søren Johannes, 2022, In: Nucleic Acids Research. 50, 8, p. 4315-4328

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    CRISPR-Cas type I-A Cascade complex couples viral infection surveillance to host transcriptional regulation in the dependence of Csa3b

    He, F., Vestergaard, G. A., Peng, W., She, Q. & Peng, Xu, 2017, In: Nucleic Acids Research. 45, 4, p. 1902-1913 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    CRISPR-based immune systems of the Sulfolobales: complexity and diversity

    Garrett, Roger Antony, Shah, S. A., Vestergaard, G. A., Deng, Ling, Guðbergsdóttir, S. R., Kenchappa, C. S., Erdmann, S. & She, Q., 2011, In: Biochemical Society Transactions. 39, 1, p. 51-57 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    CRISPR/Cas and CRISPR/Cmr immune systems of archaea

    Shah, S. A., Vestergaard, G. A. & Garrett, Roger Antony, 2012, Regulatory RNAs in prokaryotes. Springer, p. 163-181 19 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  74. Published

    CRISPR/Cas and Cmr modules, mobility and evolution of adaptive immune systems

    Shah, S. A. & Garrett, Roger Antony, 2011, In: Research in Microbiology. 162, 1, p. 27-38 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci

    Alkhnbashi, O. S., Costa, F., Shah, S. A., Garrett, Roger Antony, Saunders, S. J. & Backofen, R., 2014, In: Bioinformatics. 30, 17, p. i489-i496 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    CRP Interacts Specifically With Sxy to Activate Transcription in Escherichia coli

    Søndberg, E., Sinha, A. K., Gerdes, K. & Semsey, S., 2019, In: Frontiers in Microbiology. 10, 8 p., 2053.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Cancer cells become susceptible to natural killer cell killing after exposure to histone deacetylase inhibitors due to glycogen synthase kinase-3-dependent expression of MHC class I-related chain A and B

    Skov, Søren, Pedersen, M. T., Andresen, Lars, Straten, P. T., Woetmann, Anders & Ødum, Niels, 2005, In: Cancer Research. 65, 23, p. 11136-45 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    Catalase and NO CATALASE ACTIVITY1 promote autophagy-dependent cell death in Arabidopsis

    Hackenberg, T., Juul, T., Auzina, A., Gwizdz, S., Malolepszy, A., Van Der Kelen, K., Dam, S., Bressendorff, Simon, Lorentzen, A. M., Roepstorff, P., Nielsen, K. L., Jorgensen, J., Hofius, D., Van Breusegem, F., Petersen, Morten & Andersen, S. U., 2013, In: Plant Cell. 25, 11, p. 4616-4626 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    Cdc14 phosphatase: warning, no delay allowed for chromosome segregation!

    Machín, F., Quevedo Rodriguez, O., Ramos-Pérez, C. & García-Luis, J., 2016, In: Current Genetics. 62, 1, p. 7-13 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    Cdk phosphorylation of the Ste11 transcription factor constrains differentiation-specific transcription to G1.

    Kjaerulff, S., Andersen, N. R., Borup, M. T. & Nielsen, Olaf, 2007, In: Genes & Development. 21, 3, p. 347-59 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Cell age dependent concentration of Escherichia coli divisome proteins analyzed with ImageJ and ObjectJ

    Vischer, N. O. E., Verheul, J., Postma, M., van Saparoea, B. V. D. B., Galli, E., Natale, P., Gerdes, K., Luirink, J., Vollmer, W., Vicente, M. & den Blaauwen, T., 2015, In: Frontiers in Microbiology. 6, 18 p., 586.

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Cell biology of homologous recombination in yeast

    Eckert-Boulet, N. V., Rothstein, R. & Lisby, Michael, 2011, DNA recombination: methods and protocols. Tsubouchi, H. (ed.). Springer, p. 523-536 14 p. (Methods in Molecular Biology, Vol. 745).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  83. Published

    Cell biology of mitotic recombination

    Lisby, Michael & Rothstein, R., 2015, In: Cold Spring Harbor Perspectives in Biology. 7, 3, 23 p., a016535.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    Cell cycle regulation of homologous recombination in Saccharomyces cerevisiae

    Mathiasen, D. P. & Lisby, Michael, 2014, In: F E M S Microbiology Reviews. 38, 2, p. 172-184 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    Cell cycle-regulated centers of DNA double-strand break repair

    Lisby, Michael, Antúnez de Mayolo, A., Mortensen, U. H. & Rothstein, R., 10 Sep 2003, In: Cell Cycle. 2, 5, p. 479-83 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    Cell differentiation by interaction of two HMG-box proteins: Mat1-Mc activates M cell-specific genes in S.pombe by recruiting the ubiquitous transcription factor Ste11 to weak binding sites

    Kjaerulff, S., Dooijes, D., Clevers, H., Nielsen, O. & Nielsen, Olaf, 1 Jul 1997, In: E M B O Journal. 16, 13, p. 4021-33 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    Cell growth of wall-free L-form bacteria is limited by oxidative damage

    Kawai, Y., Mercier, R., Wu, L. J., Dominguez Cuevas, P., Oshima, T. & Errington, J., 2015, In: Current Biology. 25, 12, p. 1613-1618 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    Cerebral dysautoregulation and the risk of ischemic events in occlusive carotid artery disease

    Reinhard, M., Gerds, Thomas Alexander, Grabiak, D., Zimmermann, P. R., Roth, M., Guschlbauer, B., Timmer, J., Czosnyka, M., Weiller, C. & Hetzel, A., 2008, In: Journal of Neurology. 255, 8, p. 1182-1189 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    Chaperone role for proteins p618 and p892 in the extracellular tail development of Acidianus two-tailed virus

    Scheele, U., Erdmann, S., Ungewickell, E. J., Felisberto-Rodrigues, C., Ortiz-Lombardía, M. & Garrett, Roger Antony, 2011, In: Journal of Virology. 85, 10, p. 4812-4821 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    Characterising the CRISPR immune system in Archaea using genome sequence analysis

    Shah, S. A., 2013, Department of Biology, Faculty of Science, University of Copenhagen. 219 p.

    Research output: Book/Report › Ph.D. thesis › Research

  91. Published

    Characterization and transcriptional analysis of two gene clusters for type IV secretion machinery in Wolbachia of Armadillidium vulgare

    Félix, C., Pichon, S., Braquart-Varnier, C., Braig, H., Chen, L., Garrett, Roger Antony, Martin, G. & Grève, P., 2008, In: Research in Microbiology. 159, 6, p. 481-5 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    Characterization of a novel type III CRISPR-Cas effector provides new insights into the allosteric activation and suppression of the Cas10 DNase

    Lin, Jinzhong, Feng, M., Zhang, H. & She, Q., 2020, In: Cell Discovery. 6, 16 p., 29.

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    Characterization of an archaeal virus replication initiator protein and first insights into virus assembly of spindle-shaped virus SMV1

    Zhang, W., 2021, Department of Biology, Faculty of Science, University of Copenhagen. 140 p.

    Research output: Book/Report › Ph.D. thesis › Research

  94. Published

    Characterization of fus1 of Schizosaccharomyces pombe: a developmentally controlled function needed for conjugation

    Petersen, J., Weilguny, D., Egel, Richard, Nielsen, O. & Nielsen, Olaf, 1 Jul 1995, In: Molecular and Cellular Biology. 15, 7, p. 3697-707 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    Characterization of pMC11, a plasmid with dual origins of replication isolated from Lactobacillus casei MCJ and construction of shuttle vectors with each replicon

    Chen, Z., Lin, J., Ma, C., Zhao, S., She, Q. & Liang, Y., 2014, In: Applied Microbiology and Biotechnology. 98, 13, p. 5977-5989 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Characterization of three genes in the dam-containing operon of Escherichia coli

    Lyngstadaas, A., Løbner-Olesen, Anders & Boye, E., 10 Jun 1995, In: Molecular General Genetics. 247, 5, p. 546-54 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    Characterizing leader sequences of CRISPR loci

    Alkhnbashi, O., Shah, S. A., Garrett, Roger Antony, Saunders, S. J., Costa, F. & Backofen, R., 2016, In: Bioinformatics. 32, 17, p. i576-i585 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    Checkpoint activation by Spd1: a competition-based system relying on tandem disordered PCNA binding motifs

    Olsen, Johan Gotthardt, Prestel, Andreas, Kassem, N., Broendum, S. S., Hossain, Mohammad Shamim, Simonsen, Signe, Grysbæk, M., Mortensen, J., Rytkjær, L. L., Haxholm, G. W., Marabini, R., Holmberg, Christian, Carr, A. M., Crehuet, R., Nielsen, Olaf & Kragelund, Birthe Brandt, 2024, In: Nucleic acids symposium series. 52, 4, p. 2030–2044 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Chitin and stress induced protein kinase activation

    Kenchappa, C. S., Azevedo da Silva, R., Bressendorff, Simon, Stanimirovic, S., Olsen, J. V., Petersen, Morten & Mundy, J., 2017, Plant pattern recognition receptors: methods and protocols. Shan, L. & He, P. (eds.). Springer, p. 185-194 10 p. (Methods in Molecular Biology, Vol. 1578).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  100. Published

    Chitin-induced responses in the moss Physcomitrella patens

    Bressendorff, Simon, Rasmussen, M. W., Petersen, Morten & Mundy, J., 2017, Plant pattern recognition receptors: methods and protocols. Shan, L. & He, P. (eds.). Springer, p. 317-324 8 p. (Methods in Molecular Biology, Vol. 1578).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

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