Functional Genomics

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  1. 2010
  2. Published

    [Pregnancy within the uterine scar of a prior Caesarean section].

    Hartwell, D., Hoffmann, Eva, Krebs, Lone, Langhoff-Roos, J. & Petersen, K., Aug 2010, In: Ugeskrift for Laeger.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    miRMaid: a unified programming interface for microRNA data resources

    Jacobsen, A., Krogh, Anders, Kauppinen, S. & Lindow, M., 2010, In: BMC Bioinformatics. 11, Suppl 1, p. 29

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    NAC genes: Time-specific regulators of hormonal signaling in Arabidopsis

    Jensen, M. K., Kjærsgaard, T., Petersen, K. & Skriver, Karen, 2010, In: Plant Signalling & Behavior. 5, 7, 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Insights into the structure, function and evolution of the radical-SAM 23S rRNA methyltransferase Cfr that confers antibiotic resistance in bacteria

    Kaminska, K. H., Purta, E., Hansen, L. H., Bujnicki, J. M., Vester, B. & Long, K. S., 2010, In: Nucleic Acids Research. 38, 5, p. 1652-1663 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Gene expression profiles in rice roots under low phosphorus stress

    Li, L., Liu, C. & Lian, X., 2010, In: Plant Molecular Biology. 72, 4-5, p. 423-432 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    The fate of irreparable DNA double-strand breaks and eroded telomeres at the nuclear periphery

    Lisby, Michael, Teixeira, T., Gilson, E. & Géli, V., 2010, In: Nucleus (Austin, Tex.). 1, 2, p. 158-161 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Mutations in 23S rRNA at the peptidyl transferase center and their relationship to linezolid binding and cross-resistance

    Long, K. S., Munck, C., Andersen, T. M. B., Schaub, M. A., Hobbie, S. N., Böttger, E. C. & Vester, B., 2010, In: Antimicrobial Agents and Chemotherapy. 54, 11, p. 4705-4713 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    A long-standing Pleistocene refugium in southern Africa and a mosaic of refugia in East Africa: insights from mtDNA and the common eland antelope

    Lorenzen, Eline, Masembe, C., Arctander, P. & Siegismund, Hans Redlef, 2010, In: Journal of Biogeography. 37, 3, p. 571-581 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Lazarus1, a DUF300 protein, contributes to programmed cell death associated with Arabidopsis acd11 and the hypersensitive response

    Malinovsky, F. G., Brodersen, P., Fiil, Berthe Katrine, McKinney, L. V., Thorgrimsen, S., Beck, M., Nielsen, H. B., Pietra, S., Zipfel, C., Robatzek, S., Petersen, Morten, Hofius, D. & Mundy, J., 2010, In: P L o S One. 5, 9, 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Break-induced ATR and Ddb1-Cul4(Cdt)² ubiquitin ligase-dependent nucleotide synthesis promotes homologous recombination repair in fission yeast

    Moss, J., Tinline-Purvis, H., Walker, C. A., Folkes, L. K., Stratford, M. R., Hayles, J., Hoe, K., Kim, D., Park, H., Kearsey, S. E., Fleck, O., Holmberg, Christian, Nielsen, Olaf & Humphrey, T. C., 1 Dec 2010, In: Genes & Development. 24, 23, p. 2705-16 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Gene expression analysis of the emergence of epileptiform activity after focal injection of kainic acid into mouse hippocampus

    Motti, D., Le Duigou, C., Eugène, E., Chemaly, N., Wittner, L., Lazarevic, D., Krmac, H., Marstrand, T., Valen, E., Sanges, R., Stupka, E., Sandelin, Albin Gustav, Cherubini, E., Gustincich, S. & Miles, R., 2010, In: European Journal of Neuroscience. 32, 8, p. 1364-79 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Regulation of ribonucleotide reductase by Spd1 involves multiple mechanisms

    Nestoras, K., Mohammed, A. H., Schreurs, A., Fleck, O., Watson, A. T., Poitelea, M., O'Shea, Charlotte, Chahwan, C., Holmberg, Christian, Kragelund, Birthe Brandt, Nielsen, Olaf, Osborne, M., Carr, A. M. & Liu, C., 1 Jun 2010, In: Genes & Development. 24, 11, p. 1145-1159 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    The Scottish Structural Proteomics Facility: targets, methods and outputs

    Oke, M., Carter, L. G., Johnson, K. A., Liu, H., McMahon, S. A., Yan, X., Kerou, M., Weikart, N. D., Kadi, N., Sheikh, M. A., Schmelz, S., Dorward, M., Zawadzki, M., Cozens, C., Falconer, H., Powers, H., Overton, I. M., van Niekerk, C. A. J., Peng, X., Patel, P. & 11 others, Garrett, Roger Antony, Prangishvili, D., Botting, C. H., Coote, P. J., Dryden, D. T. F., Barton, G. J., Schwarz-Linek, U., Challis, G. L., Taylor, G. L., White, M. F. & Naismith, J. H., 1 Jun 2010, In: Journal of Structural and Functional Genomics. 11, 2, p. 167-80 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Autoimmunity in Arabidopsis acd11 is mediated by epigenetic regulation of an immune receptor

    Palma, K., Thorgrimsen, S., Malinovsky, F. G., Fiil, Berthe Katrine, Nielsen, H. B., Brodersen, P., Hofius, D., Petersen, Morten & Mundy, J., 1 Jan 2010, In: P L o S Pathogens. 6, 10

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Arabidopsis MKS1 is involved in basal immunity and requires an intact N-terminal domain for proper function

    Petersen, K., Qiu, J., Lütje, J., Fiil, Berthe Katrine, Hansen, S., Mundy, J. & Petersen, Morten, 1 Jan 2010, In: P L o S One. 5, 12, p. e14364

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Mitogen-activated protein kinase signaling in plants

    Rodriguez, M. C. S., Petersen, Morten & Mundy, J., 2010, In: Annual Review of Plant Biology. 61, 1, p. 621-649 29 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Persistent Organic Pollutant Exposure Leads to Insulin Resistance Syndrome

    Ruzzin, J., Petersen, R., Meugnier, E., Madsen, L., Lock, E., Lillefosse, H., Ma, T., Pesenti, S., Sonne, Si Brask, Marstrand, T. T., Malde, M. K., Du, Z., Chavey, C., Fajas, L., Lundebye, A., Brand, C. L., Vidal, H., Kristiansen, Karsten & Frøyland, L., 2010, In: Environmental Health Perspectives. 118, 4, p. 465-71

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Using transcriptomics to identify and validate novel biomarkers of human skeletal muscle cancer cachexia

    Stephens, N. A., Gallagher, I. J., Rooyackers, O., Skipworth, R. J., Tan, B. H., Marstrand, T. T., Ross, J. A., Guttridge, D. C., Lundell, L., Fearon, K. C. & Timmons, J. A., 2010, In: Genome Medicine. 2, 12 p., 1.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Transcriptomes of the desiccation-tolerant resurrection plant Craterostigma plantagineum

    Suarez Rodriguez, M. C., Edsgärd, D., Hussain, S. S., Alquezar Planas, D. E., Rasmussen, M., Gilbert, M Thomas P, Nielsen, B. H., Bartels, D. & Mundy, J., Jul 2010, In: The Plant Journal. 63, 2, p. 212-228 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Revealing the essentiality of multiple archaeal pcna genes using a mutant propagation assay based on an improved knockout method

    Zhang, C., Guo, L., Deng, L., Wu, Y., Liang, Y., Huang, L. & She, Q., Nov 2010, In: Microbiology. 156, Part 11

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    A bacterial ras-like small GTP-binding protein and its cognate GAP establish a dynamic spatial polarity axis to control directed motility

    ZHANG, YONG, Franco, M., Ducret, A. & Mignot, T., Jul 2010, In: PLOS Biology. 8, 7

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    The rad52-Y66A allele alters the choice of donor template during spontaneous chromosomal recombination

    de Mayolo, A. A., Sunjevaric, I., Reid, R., Mortensen, U. H., Rothstein, R. & Lisby, Michael, 2010, In: DNA Repair. 9, 1, p. 23-32

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. 2009
  25. Published

    A two-step model for senescence triggered by a single critically short telomere

    Abdallah, P., Luciano, P., Runge, K. W., Lisby, Michael, Géli, V., Gilson, E. & Teixeira, M. T., 2009, In: Nature Cell Biology. 11, 8, p. 988-93 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Dioxin increases the interaction between aryl hydrocarbon receptor and estrogen receptor alpha at human promoters

    Ahmed, S., Valen, E., Sandelin, Albin Gustav & Matthews, J., 2009, In: Toxicological Sciences. 111, 2, p. 254-266

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Viruses of the Archaea

    Basta, T., Garrett, Roger Antony & Prangishvili, D., 2009, Encyclopedia of Life Sciences. Wiley, p. 1-8

    Research output: Chapter in Book/Report/Conference proceeding › Encyclopedia chapter › Research

  28. Published

    Novel archaeal plasmid pAH1 and its interactions with the lipothrixvirus AFV1

    Basta, T., Smyth, J., Forterre, P., Prangishvili, D. & Peng, Xu, 2009, In: Molecular Microbiology. 71, 1, p. 23-34 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Localization of recombination proteins and Srs2 reveals anti-recombinase function in vivo

    Burgess, R. C., Lisby, Michael, Altmannova, V., Krejci, L., Sung, P. & Rothstein, R., 2009, In: Journal of Cell Biology. 185, 6, p. 969-81 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Unmarked gene deletion and host-vector system for the hyperthermophilic crenarchaeon Sulfolobus islandicus

    Deng, L., Zhu, H., Chen, Z., Liang, Y. X. & She, Q., 2009, In: Extremophiles. 13, 4, p. 735-46 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Vesicles in electric fields: some novel aspects of membrane behavior

    Dimova, R., Bezlyepkina, N. & Domange Jordö, M. E., 2009, In: Soft Matter. 5, 17, p. 3201-3212 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    RSK is a principal effector of the RAS-ERK pathway for eliciting a coordinate promotile/invasive gene program and phenotype in epithelial cells

    Doehn, U., Hauge, C., Frank, S. R., Jensen, C. A. J., Duda, K., Nielsen, J. V., Cohen, M. S., Johansen, Jens Vilstrup, Winther, B. R., Lund, L. R., Winther, Ole, Taunton, J., Hansen, S. H. & Frödin, Morten, 2009, In: Molecular Cell. 35, 4, p. 511-22 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Regulation of rDNA stability by sumoylation

    Eckert-Boulet, N. & Lisby, Michael, 2009, In: DNA Repair. 8, 4, p. 507-16 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Gene regulation by MAP kinase cascades

    Fiil, Berthe Katrine, Petersen, K., Petersen, Morten & Mundy, J., 2009, In: Current Opinion in Plant Biology. 12, 5, p. 615-621 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Dpb11/TopBP1 contributes to genomicstability via homologous recombinationand checkpoint signaling

    Germann, S. M., 2009, Biologisk Institut: Museum Tusculanum. 175 p.

    Research output: Book/Report › Ph.D. thesis › Research

  36. Published

    An improved PCR method for endogenous DNA retrieval in contaminated Neandertal samples based on the usage of blocking primers

    Gigli, E., Rasmussen, M., Civit, S., Rosas, A., de la Rasilla, M., Fortea, J., Gilbert, M Thomas P, Willerslev, Eske & Lalueza-Fox, C., 2009, In: Journal of Archaeological Science. 36, p. 2676-2679

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Response to Comment by Poinar et al. on "DNA from Pre-Clovis Human Coprolites in Oregon, North America"

    Gilbert, M Thomas P, Jenkins, D., Higham, T., Rasmussen, M., Malmstrom, H., Svensson, E., Sanchez, J., Cummings, L., Yohe, I. R., Hofreiter, M., Götherström, A. & Willerslev, Eske, 2009, In: Science. 325, 5937, p. 148 1 p.

    Research output: Contribution to journal › Comment/debate › Research

  38. Published

    Proteins involved in attack and defence in Zygomycete-aphid interactions

    Grell, M. N., Jensen, Annette Bruun & Lange, L., 2009.

    Research output: Contribution to conference › Conference abstract for conference › Research

  39. Published

    Ancient DNA reveals late survival of mammoth and horse in interior Alaska

    Haile, James Seymour, Froese, D. G., Macphee, R. D. E., Roberts, R. G., Arnold, L. J., Reyes, A. V., Rasmussen, M., Nielsen, Rasmus, Brook, B. W., Robinson, S., Demuro, M., Gilbert, M Thomas P, Munch, K., Austin, J. J., Cooper, A., Barnes, I., Möller, P. & Willerslev, Eske, 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 52, p. 22352-7 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Posttranscriptional crossregulation between Drosha and DGCR8

    Han, J., Pedersen, J. S., Kwon, S. C., Belair, C. D., Kim, Y., Yeom, K., Yang, W., Haussler, D., Blelloch, R. & Kim, V. N., 2009, In: Cell. 136, 1, p. 75-84 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Autophagic components contribute to hypersensitive cell death in Arabidopsis

    Hofius, D., Schultz-Larsen, T., Joensen, J., Tsitsigiannis, D. I., Petersen, N. H. T., Mattsson, O., Jørgensen, L. B., Jones, J. D. G., Mundy, J. & Petersen, Morten, 2009, In: Cell. 137, 4, p. 773-83 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Self-consuming innate immunity in Arabidopsis

    Hofius, D., Mundy, J. & Petersen, Morten, 2009, In: Autophagy. 5, 8, p. 1206-7 1 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    The genome of Burkholderia cenocepacia J2315, an epidemic pathogen of cystic fibrosis patients

    Holden, M. T. G., Seth-Smith, H. M. B., Crossman, L. C., Sebaihia, M., Bentley, S. D., Cerdeño-Tárraga, A. M., Thomson, N. R., Bason, N., Quail, M. A., Sharp, S., Cherevach, I., Churcher, C., Goodhead, I., Hauser, H., Holroyd, N., Mungall, K., Scott, P., Walker, D., White, B., Rose, H. & 12 others, Iversen, P., Mil-Homens, D., Rocha, E. P. C., Fialho, A. M., Baldwin, A., Dowson, C., Barrell, B. G., Govan, J. R., Vandamme, P., Hart, C. A., Mahenthiralingam, E. & Parkhill, J., 2009, In: Journal of Bacteriology. 191, 1, p. 261-77 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Evolution of alternative splicing regulation: changes in predicted exonic splicing regulators are not associated with changes in alternative splicing levels in primates

    Irimia, M., Rukov, J. L. & Roy, S. W., 2009, In: PLoS ONE. 4, 6, p. e5800

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Quantitative regulation of alternative splicing in evolution and development

    Irimia, M., Rukov, J. L., Roy, S. W., Vinther, Jeppe & Garcia-Fernandez, J., 2009, In: BioEssays. 31, 1, p. 40-50 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Computational Analysis of MicroRNAs

    Jacobsen, A. M. B., 2009, Museum Tusculanum.

    Research output: Book/Report › Ph.D. thesis › Research

  47. Published

    The DNA damage response at eroded telomeres and tethering to the nuclear pore complex

    Khadaroo, B., Teixeira, M. T., Luciano, P., Eckert-Boulet, N., Germann, S. M., Simon, M. N., Gallina, I., Abdallah, P., Gilson, E., Géli, V. & Lisby, Michael, 2009, In: Nature Cell Biology. 11, 8, p. 980-7 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    The mosaic genome structure of the Wolbachia wRi strain infecting Drosophila simulans

    Klasson, L., Westberg, J., Sapountzis, P., Näslund, K., Lutnaes, Y., Darby, A. C., Veneti, Z., Chen, L., Braig, H. R., Garrett, Roger Antony, Bourtzis, K. & Andersson, S. G. E., 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 14, p. 5725-5730

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Fish protein hydrolysate elevates plasma bile acids and reduces visceral adipose tissue mass in rats

    Liaset, B., Madsen, L., Hao, Q., Criales, G., Mellgren, G., Marschall, H., Hallenborg, P., Espe, M., Frøyland, L. & Kristiansen, Karsten, 2009, In: BBA General Subjects. 1791, 4, p. 254-62 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties

    Lillestøl, R. K., Shah, S. A., Brügger, K., Redder, P., Phan, Safir Hien, Christiansen, Jan & Garrett, Roger Antony, 2009, In: Molecular Microbiology. 72, 1, p. 259-272

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Choreography of recombination proteins during the DNA damage response

    Lisby, Michael & Rothstein, R., 2009, In: DNA Repair. 8, 9, p. 1068-76 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    DNA damage response to eroded telomeres

    Lisby, Michael & Géli, V., 2009, In: Cell Cycle. 8, 22, p. 3617-8 1 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    Identification and characterization of barley RNA-directed RNA polymerases

    Madsen, C. T., Stephens, J., Hornyik, C., Shaw, J., Collinge, David B., Lacomme, C. & Albrechtsen, M. T., 2009, In: BBA General Subjects. 1789, 5, p. 375-385 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Novel death regulators in plant immunity

    Malinovsky, F. G., 2009, Biologisk Institut: Museum Tusculanum. 55 p.

    Research output: Book/Report › Ph.D. thesis › Research

  55. Published

    Quantitative analysis of promoter architecture and gene regulation

    Marstrand, T. T., 2009, Biologisk Institut: Museum Tusculanum. 33 p.

    Research output: Book/Report › Ph.D. thesis › Research

  56. Published

    Haploinsufficiency of the retinoblastoma protein gene reduces diet-induced obesity, insulin resistance, and hepatosteatosis in mice

    Mercader, J., Ribot, J., Murano, I., Feddersen, S., Cinti, S., Madsen, L., Kristiansen, Karsten, Bonet, M. L. & Palou, A., 2009, In: American Journal of Physiology: Endocrinology and Metabolism. 297, 1, p. E184-E193

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    Rad10 exhibits lesion-dependent genetic requirements for recruitment to DNA double-strand breaks in Saccharomyces cerevisiae

    Moore, D. M., Karlin, J., González-Barrera, S., Mardiros, A., Lisby, Michael, Doughty, A., Gilley, J., Rothstein, R., Friedberg, E. C. & Fischhaber, P. L., 2009, In: Nucleic Acids Research. 37, 19, p. 6429-38 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    Rad52

    Mortensen, U. H., Lisby, Michael & Rothstein, R., 2009, In: Current Biology. 19, 16, p. R676-7

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    A conformational switch in the DiGIR1 ribozyme involved in release and folding of the downstream I-DirI mRNA

    Nielsen, Henrik, Einvik, C., Lentz, T. E., Hedegaard, M. M. & Johansen, S. D., 2009, In: RNA: A publication of the RNA Society. 15, 5, p. 958-67 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    A Flp-nick system to study repair of a single protein-bound nick in vivo

    Nielsen, I., Bentsen, I. B., Lisby, Michael, Hansen, S., Mundbjerg, K., Andersen, A. H. & Bjergbaek, L., 2009, In: Nature Methods. 6, 10, p. 753-757 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    Genetic diversity and phylogenetic analysis of the attachment glycoprotein of phocine distemper viruses of the 2002 and 1988 epizootics

    Nielsen, L., Arctander, P., Jensen, T. H., Dietz, Hans Henrik, Hammer, A. S., Banyard, A., Barrett, T. & Blixenkrone-Møller, M., 2009, In: Virus Research. 144, 1-2, p. 323-328 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    Identification and analysis of miRNAs in human breast cancer and teratoma samples using deep sequencing

    Nygaard, S., Jacobsen, A., Lindow, M., Eriksen, J., Balslev, E., Flyger, H., Tolstrup, N., Moller, S., Krogh, Anders & Litman, T., 2009, In: B M C Medical Genomics. 2, 1, p. 35

    Research output: Contribution to journal › Journal article › Research › peer-review

  63. Published

    Investigating non-coding genome content using high-throughput sequencing data

    Nygaard, S., 2009, Biologisk Institut: Museum Tusculanum. 34 p.

    Research output: Book/Report › Ph.D. thesis › Research

  64. Published

    Seawater-regulated genes for two-component systems and outer membrane proteins in myxococcus

    Pan, H. W., Liu, H., Liu, T., Li, C. Y., Li, Z. F., Cai, K., Zhang, C. Y., ZHANG, YONG, Hu, W., Wu, Z. H. & Li, Y. Z., Apr 2009, In: Journal of Bacteriology. 191, 7, p. 2102-2111 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    An upstream activation element exerting differential transcriptional activation on an archaeal promoter

    Peng, N., Xia, Q., Chen, Z., Liang, Y. X. & She, Q., 2009, In: Molecular Microbiology. 74, 4, p. 928-939

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    Identification of proteins interacting with Arabidopsis ACD11.

    Petersen, N. H. T., Joensen, J., McKinney, L. V., Brodersen, P., Petersen, Morten, Hofius, D. & Mundy, J., 2009, In: Journal of Plant Physiology. 166, 6

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    Conservation of the Type IV secretion system throughout Wolbachia evolution

    Pichon, S., Bouchon, D., Cordaux, R., Chen, L., Garrett, Roger Antony & Grève, P., 2009, In: Biochemical and Biophysical Research Communications. 385, 4, p. 557-62 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles

    Portales-Casamar, E., Thongjuea, S., Kwon, A. T., Arenillas, D., Zhao, X., Valen, E., Yusuf, D., Lenhard, B., Wasserman, W. W. & Sandelin, Albin Gustav, 2009, In: Nucleic Acids Research.

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. Published

    Polypeptides comprising an ice-binding activity

    Ramløv, H., Wilkens, C. & Løbner-Olesen, Anders, 2009, Patent No. WO/2009/065415

    Research output: Patent

  70. Published

    Response to Comment by Goldberg et al. on "DNA from Pre-Clovis Human Coprolites in Oregon, North America"

    Rasmussen, M., Cummings, L., Gilbert, M Thomas P, Bryant, V., Smith, C., Jenkins, D. & Willerslev, Eske, 2009, In: Science. 325, p. 148 1 p.

    Research output: Contribution to journal › Comment/debate › Research

  71. Published

    Four newly isolated fuselloviruses from extreme geothermal environments reveal unusual morphologies and a possible interviral recombination mechanism

    Redder, P., Peng, Xu, Brügger, K., Shah, S. A., Roesch, F., Greve, B., She, Q., Schleper, C., Forterre, P., Garrett, Roger Antony & Prangishvili, D., 2009, In: Environmental Microbiology. 11, 11, p. 2849-62 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    Distribution of CRISPR spacer matches in viruses and plasmids of crenarchaeal acidothermophiles and implications for their inhibitory mechanism

    Shah, S. A., Hansen, Niels Richard & Garrett, Roger Antony, 2009, In: Biochemical Society Transactions. 37, Pt 1, p. 23-8 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Genetic analyses in the hyperthermophilic archaeon Sulfolobus islandicus

    She, Q., Zhang, C., Deng, L., Peng, N., Chen, Z. & Liang, Y. X., 2009, In: Biochemical Society Transactions. 37, Pt 1, p. 92-6 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line

    Suzuki, H., Forrest, A. R. R., van Nimwegen, E., Daub, C. O., Balwierz, P. J., Irvine, K. M., Lassmann, T., Ravasi, T., Hasegawa, Y., de Hoon, M. J. L., Katayama, S., Schroder, K., Carninci, P., Tomaru, Y., Kanamori-Katayama, M., Kubosaki, A., Akalin, A., Ando, Y., Arner, E., Asada, M. & 31 others, Asahara, H., Bailey, T., Bajic, V. B., Bauer, D., Beckhouse, A. G., Bertin, N., Björkegren, J., Brombacher, F., Bulger, E., Chalk, A. M., Chiba, J., Cloonan, N., Dawe, A., Dostie, J., Engström, P. G., Essack, M., Faulkner, G. J., Fink, J. L., Fredman, D., Fujimori, K., Furuno, M., Gojobori, T., Gough, J., Grimmond, S. M., Jacobsen, A., Krogh, Anders, Nygaard, S., Sandelin, Albin Gustav, Valen, E., Winther, Ole & Riken Omics Science Center, R. O. S. C., 2009, In: Nature Genetics. 41, 5, p. 553-62 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    Computational methods for exploration and prediction of regulatory elements in RNA Polymerase II promoters

    Tang, M. E., 2009, Biologisk Institut: Museum Tusculanum. 127 p.

    Research output: Book/Report › Ph.D. thesis › Research

  76. Published

    Autoimmunity in Plants: Guards with a License to Kill

    Thorgrimsen, S. P., 2009, Copenhagen University. Department of Biology: Museum Tusculanum. 91 p.

    Research output: Book/Report › Ph.D. thesis › Research

  77. Published

    Discovery of regulatory elements is improved by a discriminatory approach

    Valen, E., Sandelin, Albin Gustav, Winther, Ole & Krogh, Anders, 2009, In: PLoS Computational Biology. 5, 11, p. e1000562

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE

    Valen, E., Pascarella, G., Chalk, A., Maeda, N., Kojima, M., Kawazu, C., Murata, M., Nishiyori, H., Lazarevic, D., Motti, D., Marstrand, T. T., Tang, M-H. E., Zhao, X., Krogh, A., Winther, O., Arakawa, T., Kawai, J., Wells, C., Daub, C., Harbers, M. & 4 others, Hayashizaki, Y., Gustincich, S., Sandelin, Albin Gustav & Carninci, P., 2009, In: Genome Research. 19, 2, p. 255-65 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    The life-cycle of ATV and other crenarchaeal viruses

    Vestergaard, G. A., 2009, Biologisk Institut: Museum Tusculanum. 91 p.

    Research output: Book/Report › Ph.D. thesis › Research

  80. Published

    Where sociality and relatedness diverge: the genetic basis for hierarchical social organization in African elephants

    Wittemyer, G., Okello, J. B. A., Rasmussen, H. B., Arctander, P., Nyakaana, S., Douglas-Hamilton, I. & Siegismund, Hans Redlef, 2009, In: PROCEEDINGS OF THE ROYAL SOCIETY OF LONDON SERIES B-CONTAINING PAPERS OF A BIOLOGICAL CHARACTER. 276, 1672, p. 3513-3521

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    DISPARE: DIScriminative PAttern REfinement for Position Weight Matrices

    da Piedade, I., Tang, M. E. & Elemento, O., 2009, In: BMC Bioinformatics. 10, 388, 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    High-throughput screening of Erwinia chrysanthemi pectin methylesterase variants using carbohydrate microarrays

    Øbro, J., Sørensen, I., Derkx, P., Madsen, C. T., Drews, M., Willer, M., Mikkelsen, J. D. & Willats, W. G. T., 2009, In: Proteomics - Practical Proteomics. 9, 7, p. 1861-1868

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. 2008
  84. Published

    EGFR induces expression of IRF-1 via STAT1 and STAT3 activation leading to growth arrest of human cancer cells

    Andersen, P., Pedersen, M. W., Woetmann, Anders , Villingshøj, M., Stockhausen, M., Ødum, Niels & Poulsen, H. S., 2008, In: International Journal of Cancer. 122, 2, p. 342-9 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    Differential regulation of the cellular response to DNA double-strand breaks in G1.

    Barlow, J. H., Lisby, Michael & Rothstein, R., 2008, In: Molecular Cell. 30, 1, p. 73-85 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    Viruses in acidic geothermal environments of the Kamchatka Peninsula

    Bize, A., Peng, Xu, Prokofeva, M., Maclellan, K., Lucas, S., Forterre, P., Garrett, Roger Antony, Bonch-Osmolovskaya, E. A. & Prangishvili, D., 2008, In: Research in Microbiology. 159, 5, p. 358-66 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    Identification of let-7-regulated oncofetal genes.

    Boyerinas, B., Park, S., Shomron, N., Hedegaard, M. M., Vinther, Jeppe, Andersen, J. S., Feig, C., Xu, J., Burge, C. B. & Peter, M. E., 2008, In: Cancer Research. 68, 8, p. 2587-91 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    Revised sequence of foxtail mosaic virus reveals a triple gene block structure similar to potato virus X

    Bruun-Rasmussen, M., Madsen, C. T., Johansen, E. & Albrechtsen, M., 2008, In: Archives of Virology. 153, 1, p. 223-226

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update.

    Bryne, J. C., Valen, E., Tang, M. E., Marstrand, T., Winther, Ole, da Piedade, I., Krogh, Anders, Lenhard, B. & Sandelin, Albin Gustav, 2008, In: Nucleic Acids Research. 36, Database issue, p. D102-6

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    57miRNA regulation during oncogene-induced senescence


    Christoffersen, N. R., Frankel, Lisa, Klausen, M., Jacobsen, A., Krogh, Anders & Lund, Anders H., May 2008.

    Research output: Contribution to conference › Conference abstract for conference › Research

  91. Published

    Protein Structure Prediction Using Bee Colony Optimization Metaheuristic: Extended Abstract

    Fonseca, R., Paluszewski, M. & Winter, Pawel, 2008, In: Koebenhavns Universitet. Datalogisk Institut. Rapport. 12, 11 p.

    Research output: Contribution to journal › Conference abstract in journal › Research

  92. Published

    Characterization and transcriptional analysis of two gene clusters for type IV secretion machinery in Wolbachia of Armadillidium vulgare

    Félix, C., Pichon, S., Braquart-Varnier, C., Braig, H., Chen, L., Garrett, Roger Antony, Martin, G. & Grève, P., 2008, In: Research in Microbiology. 159, 6, p. 481-5 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    Mutation of miRNA target sequences during human evolution.

    Gardner, P. P. & Vinther, Jeppe, 2008, In: Trends in Genetics. 24, 6, p. 262-5 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    Rfam: updates to the RNA families database

    Gardner, P. P., Daub, J., Tate, J. G., Nawrocki, E. P., Kolbe, D. L., Lindgreen, S., Wilkinson, A. C., Finn, R. D., Griffiths-Jones, S., Eddy, S. R. & Bateman, A., 2008, In: Nucleic Acids Research.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    FOXP3 positive regulatory T-cells in cutaneous T-cell lymphomas

    Gjerdrum, L. M., Woetmann, Anders , Ødum, Niels & Ralfkiaer, E., 2008, In: Virchows Archiv. 452, Suppl. 1, p. S4-S4

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    FOXP3 positive regulatory T-cells in cutaneous and systemic CD30 positive T-cell lymphoproliferations

    Gjerdrum, L. M., Woetmann, Anders , Ødum, Niels, Hother, C., Henrik-Nielsen, R., Gniadecki, R. & Ralfkiaer, E., 2008, In: European Journal of Haematology. 80, 6, p. 483-9 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    Origin of introns by 'intronization' of exonic sequences.

    Irimia, M., Rukov, J. L., Penny, D., Vinther, Jeppe, Garcia-Fernandez, J. & Roy, S. W., 2008, In: Trends in Genetics.

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    Reading Prokaryotic Genomes

    Iversen, P., 2008, Biologisk Institut: Museum Tusculanum. 168 p.

    Research output: Book/Report › Ph.D. thesis › Research

  99. Published

    Gamma c-signaling cytokines induce a regulatory T cell phenotype in malignant CD4+ T lymphocytes

    Kasprzycka, M., Zhang, Q., Witkiewicz, A., Marzec, M., Potoczek, M., Liu, X., Wang, H. Y., Milone, M., Basu, S., Mauger, J., Choi, J. K., Abrams, J. T., Hou, J. S., Rook, A. H., Vonderheid, E., Woetmann, Anders , Ødum, Niels & Wasik, M. A., 2008, In: Journal of Immunology. 181, 4, p. 2506-12 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    Hidden layers of human small RNAs

    Kawaji, H., Nakamura, M., Takahashi, Y., Sandelin, Albin Gustav, Katayama, S., Fukuda, S., Daub, C. O., Kai, C., Kawai, J., Yasuda, J., Carninci, P. & Hayashizaki, Y., 2008, In: BMC Genomics. 9, p. 157

    Research output: Contribution to journal › Journal article › Research › peer-review

  101. Published

    Compensatory role for Rad52 during recombinational repair in Ustilago maydis.

    Kojic, M., Mao, N., Zhou, Q., Lisby, Michael & Holloman, W. K., 2008, In: Molecular Microbiology. 67, 5, p. 1156-68 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  102. Published

    Malignant Tregs express low molecular splice forms of FOXP3 in Sézary syndrome

    Krejsgaard, T., Gjerdrum, L. M., Ralfkiaer, E., Lauenborg, B., Eriksen, K. W., Mathiesen, A., Bovin, L. F., Gniadecki, R., Geisler, Carsten, Ryder, L. P., Zhang, Q., Wasik, M. A., Ødum, Niels & Woetmann, Anders , 2008, In: Leukemia. p. 2230-2239 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  103. Published

    Two conserved modules of Schizosaccharomyces pombe Mediator regulate distinct cellular pathways

    Linder, T., Rasmussen, N., Samuelsen, C. O., Chatzidaki, E., Baraznenok, V., Beve, J., Henriksen, P., Gustafsson, C. M. & Holmberg, Steen, 2008, In: Nucleic Acids Research. 36, 8, p. 2489-504 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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