- 2022
- Published
Effects of LPS Composition in Escherichia coli on Antibacterial Activity and Bacterial Uptake of Antisense Peptide-PNA Conjugates
Goltermann, Lise, Zhang, Meiqin, Ebbensgaard, Anna Elisabeth, Fiodorovaite, M., Yavari, Niloofar, Løbner-Olesen, Anders & Nielsen, Peter E., 2022, In: Frontiers in Microbiology. 13, 877377.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic and transcriptomic analysis unveils population evolution and development of pesticide resistance in fall armyworm Spodoptera frugiperda
Gui, F., Lan, T., Zhao, Y., Guo, W., Dong, Y., Fang, D., Liu, H., Li, H., Wang, H., Hao, R., Cheng, X., Li, Y., Yang, P., Sahu, S. K., Chen, Y., Cheng, L., He, S., Liu, P., Fan, G., Lu, H. & 24 others, , 2022, In: Protein & Cell (Print). 13, 7, p. 513-531 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Chromosome-scale assembly and whole-genome sequencing of 266 giant panda roundworms provide insights into their evolution, adaptation and potential drug targets
Han, L., Lan, T., Li, D., Li, H., Deng, L., Peng, Z., He, S., Zhou, Y., Han, R., Li, L., Lu, Y., Lu, H., Wang, Q., Yang, S., Zhu, Y., Huang, Y., Cheng, X., Yu, J., Wang, Y., Sun, H. & 8 others, , 2022, In: Molecular Ecology Resources. 22, 2, p. 768-785 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Protein domain-dependent vesiculation of Lipoprotein A, a protein that is important in cell wall synthesis and fitness of the human respiratory pathogen Haemophilus influenzae
Jalalvand, F., Su, Y., Manat, G., Chernobrovkin, A., Kadari, M., Jonsson, S., Janousková, M., Rutishauser, D., Semsey, S., Løbner-Olesen, Anders, Sandblad, L., Flärdh, K., Mengin-Lecreulx, D., Zubarev, R. A. & Riesbeck, K., 2022, In: Frontiers in Cellular and Infection Microbiology. 12, 17 p., 984955.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Overexpression of ATG8/LC3 enhances wound-induced somatic reprogramming in Physcomitrium patens
Kanne, J. V., Ishikawa, M., Bressendorff, Simon, Ansbøl, Jeppe, Hasebe, M., Rodriguez, Eleazar & Petersen, Morten, 2022, In: Autophagy. 18, 6, p. 1463-1466 4 p.Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
Implicating genes, pleiotropy, and sexual dimorphism at blood lipid loci through multi-ancestry meta-analysis
Kanoni, S., Graham, S. E., Wang, Y., Surakka, I., Ramdas, S., Zhu, X., Clarke, S. L., Bhatti, K. F., Vedantam, S., Winkler, T. W., Locke, A. E., Marouli, E., Zajac, G. J. M., Wu, K. H. H., Ntalla, I., Hui, Q., Klarin, D., Hilliard, A. T., Wang, Z., Xue, C. & 519 others, , 2022, In: Genome Biology. 23, 1, 42 p., 268.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rdh54 stabilizes Rad51 at displacement loop intermediates to regulate genetic exchange between chromosomes
Keymakh, M., Dau, J., Hu, J., Ferlez, B., Lisby, Michael & Brooks Crickard, J., 2022, In: PLOS Genetics. 18, 9, 26 p., e1010412.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomes shed light on the evolution of Begonia, a mega-diverse genus
Li, L., Chen, X., Fang, D., Dong, S., Guo, X., Li, N., Campos-Dominguez, L., Wang, W., Liu, Y., Lang, X., Peng, Y., Tian, D., Thomas, D. C., Mu, W., Liu, M., Wu, C., Yang, T., Zhang, S., Yang, L., Yang, J. & 23 others, , 2022, In: New Phytologist. 234, 1, p. 295-310 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Transcription of the Alginate Operon in Pseudomonas aeruginosa Is Regulated by c-di-GMP
Liang, Z., Rybtke, Morten Levin, Kragh, K. N., Johnson, O., Schicketanz, Muriel Leandra, Zhang, Yong, Andersen, Jens Bo & Tolker-Nielsen, Tim, 2022, In: Microbiology Spectrum. 10, 4, 13 p., e00675-22.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Synergy between Mecillinam and Ceftazidime/Avibactam or Avibactam against Multi-Drug-Resistant Carbapenemase-Producing Escherichia coli and Klebsiella pneumoniae
List, K. K., Kolpen, Mette, Kragh, K. N., Charbon, Godefroid, Radmer, S., Hansen, F., Løbner-Olesen, Anders, Frimodt-Møller, N. & Hertz, F. B., 2022, In: Antibiotics. 11, 10, 13 p., 1280.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatiotemporal mapping of gene expression landscapes and developmental trajectories during zebrafish embryogenesis
Liu, C., Li, R., Li, Y., Lin, X., Zhao, K., Liu, Q., Wang, S., Yang, X., Shi, X., Ma, Y., Pei, C., Wang, H., Bao, W., Hui, J., Yang, T., Xu, Z., Lai, T., Berberoglu, M. A., Sahu, S. K., Esteban, M. A. & 8 others, , 2022, In: Developmental Cell. 57, 10, p. 1284-1298.e5Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DNA Motifs and an Accessory CRISPR Factor Determine Cas1 Binding and Integration Activity in Sulfolobus islandicus
Liu, T., Xu, Y., Wang, X., Ye, Q., Liu, Z., Zhang, Z., Liu, J., Yang, Y., Peng, Xu & Peng, N., 2022, In: International Journal of Molecular Sciences . 23, 17, 15 p., 10178.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dissection of Functional Domains of Orc1-2, the Archaeal Global DNA Damage-Responsive Regulator
Liu, X., Sun, M., Xu, R., Shen, Y., Huang, Q., Feng, X. & She, Q., 2022, In: International Journal of Molecular Sciences. 23, 23, 16 p., 14609.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Cycas genome and the early evolution of seed plants
Liu, Y., Wang, S., Li, L., Yang, T., Dong, S., Wei, T., Wu, S., Liu, Y., Gong, Y., Feng, X., Ma, J., Chang, G., Huang, J., Yang, Y., Wang, H., Liu, M., Xu, Y., Liang, H., Yu, J., Cai, Y. & 45 others, , 2022, In: Nature Plants. 8, 4, p. 389-401 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Solanimycin: Biosynthesis and Distribution of a New Antifungal Antibiotic Regulated by Two Quorum-Sensing Systems
Matilla, M. A., Monson, R. E., Murphy, A., Schicketanz, Muriel Leandra, Rawlinson, A., Duncan, C., Mata, J., Leeper, F. & Salmond, G. P. C., 2022, In: mBio. 13, 6, 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The transcription factor Atf1 lowers the transition barrier for nucleosome-mediated establishment of heterochromatin
Nickels, Jan Fabio, Della-Rosa, M. E., Miguelez Goyeneche, I., Charlton, Sebastian Jespersen, Sneppen, Kim & Thon, Genevieve, 2022, In: Cell Reports. 39, 7, 17 p., 110828.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Single-Nucleus RNA Sequencing and Spatial Transcriptomics Reveal the Immunological Microenvironment of Cervical Squamous Cell Carcinoma
Ou, Z., Lin, S., Qiu, J., Ding, W., Ren, P., Chen, D., Wang, J., Tong, Y., Wu, D., Chen, A., Deng, Y., Cheng, M., Peng, T., Lu, H., Yang, H., Wang, J., Jin, X., Ma, D., Xu, X., Wang, Y. & 2 others, , 2022, In: Advanced Science. 9, 29, 20 p., 2203040.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids
Pinilla Redondo, Rafael, Russel, J., Mayo-Muñoz, D., Shah, S. A., Garrett, Roger Antony, Nesme, Joseph, Madsen, Jonas Stenløkke, Fineran, P. C. & Sørensen, Søren Johannes, 2022, In: Nucleic Acids Research. 50, 8, p. 4315-4328Research output: Contribution to journal › Journal article › Research › peer-review
- Published
SCAI promotes error-free repair of DNA interstrand crosslinks via the Fanconi anemia pathway
Schubert, Lisa, Hendriks, Ivo Alexander, Hertz, Emil Peter Thrane, Wu, Wei, Sellés Baiget, Selene, Hoffmann, Saskia, Bagge, Keerthana Stine Viswalingam, Gallina, I., Pentakota, S., Benedict, Bente, Johansen, Joachim, Apelt, K., Luijsterburg, M. S., Rasmussen, Simon, Lisby, Michael, Liu, Ying, Nielsen, Michael Lund, Mailand, Niels & Duxin, Julien, 2022, In: EMBO Reports. 23, 4, 20 p., e53639.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative proteomics and secretomics revealed virulence, and coresistance-related factors in non O1/O139 Vibrio cholerae recovered from 16 species of consumable aquatic animals
Shan, X., Fu, J., Li, X., Peng, Xu & Chen, L., 2022, In: Journal of Proteomics. 251, 15 p., 104408.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A draft genome of the medicinal plant Cremastra appendiculata (D. Don) provides insights into the colchicine biosynthetic pathway
Wang, J., Xie, J., Chen, H., Qiu, X., Cui, H., Liu, Y., Sahu, S. K., Fang, D., Li, T., Wang, M., Chen, Y., Liu, Huan, Zhang, J. & Wang, B., 2022, In: Communications Biology . 5, 12 p., 1294.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The chromosome-scale genomes of Dipterocarpus turbinatus and Hopea hainanensis (Dipterocarpaceae) provide insights into fragrant oleoresin biosynthesis and hardwood formation
Wang, S., Liang, H., Wang, H., Li, L., Xu, Y., Liu, Y., Liu, M., Wei, J., Ma, T., Le, C., Yang, J., He, C., Liu, J., Zhao, J., Zhao, Y., Lisby, Michael, Sahu, S. K. & Liu, H., 2022, In: Plant Biotechnology Journal. 20, 3, p. 538-553 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Single-cell Stereo-seq reveals induced progenitor cells involved in axolotl brain regeneration
Wei, X., Fu, S., Li, H., Liu, Y., Wang, S., Feng, W., Yang, Y., Liu, X., Zeng, Y-Y., Cheng, M., Lai, Y., Qiu, X., Wu, L., Zhang, N., Jiang, Y., Xu, J., Su, X., Peng, C., Han, L., Lou, W. P-K. & 16 others, , 2022, In: Science. 377, 6610, 10 p., eabp9444.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Survival and Genome Diversity of Vibrio parahaemolyticus Isolated from Edible Aquatic Animals
Xu, D., Peng, Xu, Xie, L. & Chen, L., 2022, In: Diversity. 14, 5, 23 p., 350.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Diverse Aquatic Animal Matrices Play a Key Role in Survival and Potential Virulence of Non-O1/O139 Vibrio cholerae Isolates
Yan, L., Jin, Y., Zhang, B., Xu, Y., Peng, Xu, Qin, S. & Chen, L., 2022, In: Frontiers in Microbiology. 13, 21 p., 896767.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative Analyses of 3,654 Plastid Genomes Unravel Insights Into Evolutionary Dynamics and Phylogenetic Discordance of Green Plants
Yang, T., Sahu, S. K., Yang, L., Liu, Y., Mu, W., Liu, X., Strube, M. L., Liu, Huan & Zhong, B., 2022, In: Frontiers in Plant Science. 13, 13 p., 808156.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Inactivation of Target RNA Cleavage of a III-B CRISPR-Cas System Induces Robust Autoimmunity in Saccharolobus islandicus
Zhang, Y., Lin, Jinzhong, Tian, X., Wang, Y., Zhao, R., Wu, C., Wang, X., Zhao, P., Bi, X., Yu, Z., Han, W., Peng, N., Liang, Y. X. & She, Q., 2022, In: International Journal of Molecular Sciences . 23, 15, 16 p., 8515.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
mRNA Decapping Factors LSM1 and PAT Paralogs Are Involved in Turnip Mosaic Virus Viral Infection
Zuo, Zhangli Thomsen, Roux, M., Rodriguez, Eleazar & Petersen, Morten, 2022, In: Molecular plant-microbe interactions : MPMI. 35, 2, p. 125-130 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2021
- Published
An improved direct metamobilome approach increases the detection of larger-sized circular elements across kingdoms
Alanin, K. W. S., Jørgensen, T. S., Browne, Patrick Denis, Petersen, Bent, Riber, Leise, Kot, Witold & Hansen, Lars Hestbjerg, 2021, In: Plasmid. 115, 11 p., 102576.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome editing in archaeal viruses and endogenous viral protein purification
Alfastsen, L., Peng, Xu & Bhoobalan, Yuvaraj, 2021, In: STAR Protocols. 2, 4, 27 p., 100791.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A complex of BRCA2 and PP2A-B56 is required for DNA repair by homologous recombination
Ambjørn, Sara Marie, Duxin, Julien, Hertz, Emil Peter Thrane, Nasa, I., Duro, Joana Maria, Kruse, Thomas, Lopez-Mendez, B., Rymarczyk, B., Cressey, L. E., van Overeem Hansen, T., Kettenbach, A. N., Østergaard, Vibe Hallundbæk, Lisby, Michael & Nilsson, Jakob, 2021, In: Nature Communications. 12, 1, 11 p., 5748.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Topoisomerase II deficiency leads to a postreplicative structural shift in all Saccharomyces cerevisiae chromosomes
Ayra-Plasencia, J., Ramos-Pérez, C., Santana-Sosa, S., Quevedo, O., Medina-Suárez, S., Matos-Perdomo, E., Zamora-Dorta, M., Brown, G. W., Lisby, Michael & Machín, F., 2021, In: Scientific Reports. 11, 16 p., 14940.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Functions of TopBP1 in preserving genome integrity during mitosis
Bagge, J., Østergaard, Vibe Hallundbæk & Lisby, Michael, 2021, In: Seminars in Cell and Developmental Biology. 113, p. 57-64 8 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Antisense inhibition of the Escherichia coli NrdAB aerobic ribonucleotide reductase is bactericidal due to induction of DNA strand breaks
Campion, C., Charbon, Godefroid, Thomsen, T. T., Nielsen, Peter E. & Løbner-Olesen, Anders, 2021, In: Journal of Antimicrobial Chemotherapy. 76, 11, p. 2802–2814 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Arresting chromosome replication upon energy starvation in Escherichia coli
Charbon, Godefroid, Frimodt-Møller, Jakob & Løbner-Olesen, Anders, 2021, In: Current Genetics. 67, 6, p. 877-882 6 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Energy Starvation Induces a Cell Cycle Arrest in Escherichia coli by Triggering Degradation of the DnaA Initiator Protein
Charbon, Godefroid, Mendoza-Chamizo, B., Campion, C., Li, X., Jensen, P. R., Frimodt-Møller, Jakob & Løbner-Olesen, Anders, 2021, In: Frontiers in Molecular Biosciences. 8, 9 p., 629953.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rad52 SUMOylation functions as a molecular switch that determines a balance between the Rad5- and Rad59-dependent survivors
Charifi, F., Churikov, D., Eckert-Boulet, N., Minguet, C., Jourquin, F., Hardy, J., Lisby, Michael, Simon, M. N. & Géli, V., 2021, In: iScience. 24, 3, 26 p., 102231.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
(p)ppGpp-Dependent Regulation of the Nucleotide Hydrolase PpnN Confers Complement Resistance in Salmonella enterica Serovar Typhimurium
Chau, N. Y. E., Pérez-Morales, D., Elhenawy, W., Bustamante, V. H., ZHANG, YONG & Coombes, B. K., 2021, In: Infection and Immunity. 89, 2, 14 p., e00639-20.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A chromosome-level genome assembly of rugged rose (Rosa rugosa) provides insights into its evolution, ecology, and floral characteristics
Chen, F., Su, L., Hu, S., Xue, J., Liu, H., Liu, G., Jiang, Y., Du, J., Qiao, Y., Fan, Y., Liu, Huan, Yang, Q., Lu, W., Shao, Z., Zhang, J., Zhang, L., Chen, F. & Cheng, Z. (., 2021, In: Horticulture Research. 8, 13 p., 141.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The genome of Magnolia biondii Pamp. provides insights into the evolution of Magnoliales and biosynthesis of terpenoids
Dong, S., Liu, M., Liu, Y., Chen, F., Yang, T., Chen, L., Zhang, X., Guo, X., Fang, D., Li, L., Deng, T., Yao, Z., Lang, X., Gong, Y., Wu, E., Wang, Y., Shen, Y., Gong, X., Liu, Huan & Zhang, S., 2021, In: Horticulture Research. 8, 13 p., 38.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Clausena lansium (Wampee) genome reveal new insights into the carbazole alkaloids biosynthesis pathway
Fan, Y., Sahu, S. K., Yang, T., Mu, W., Wei, J., Cheng, L., Yang, J., Liu, J., Zhao, Y., Lisby, Michael & Liu, Huan, 2021, In: Genomics. 113, 6, p. 3696-3704 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Activating the Cpx response induces tolerance to antisense PNA delivered by an arginine-rich peptide in Escherichia coli
Frimodt-Møller, Jakob, Koulouktsis, A., Charbon, Godefroid, Otterlei, M., Nielsen, Peter E. & Løbner-Olesen, Anders, 2021, In: Molecular Therapy - Nucleic Acids. 25, p. 444-454 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Chromosome-scale genomes provide new insights into subspecies divergence and evolutionary characteristics of the giant panda
Guang, X., Lan, T., Wan, Q. H., Huang, Y., Li, H., Zhang, M., Li, R., Zhang, Z., Lei, Y., Zhang, L., Zhang, H., Li, D., Li, X., Li, H., Xu, Y., Qiao, M., Wu, D., Tang, K., Zhao, P., Lin, J-Q. & 11 others, , 2021, In: Science Bulletin. 66, 19, p. 2002-2013 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Chloranthus genome provides insights into the early diversification of angiosperms
Guo, X., Fang, D., Sahu, S. K., Yang, S., Guang, X., Folk, R., Smith, S. A., Chanderbali, A. S., Chen, S., Liu, M., Yang, T., Zhang, S., Liu, X., Xu, X., Soltis, P. S., Soltis, D. E. & Liu, Huan, 2021, In: Nature Communications. 12, 14 p., 6930.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)
Klionsky, D. J., Abdel-Aziz, A. K., Abdelfatah, S., Abdellatif, M., Abdoli, A., Abel, S., Abeliovich, H., Abildgaard, M. H., Abudu, Y. P., Acevedo-Arozena, A., Adamopoulos, I. E., Adeli, K., Adolph, T. E., Adornetto, A., Aflaki, E., Agam, G., Agarwal, A., Aggarwal, B. B., Agnello, M., Agostinis, P. & 2,908 others, , 2021, In: Autophagy. 17, p. 1-382 382 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
rhvervseventyr for life science og biotek i fare på grund af underfinansiering af universiteterne: To professorer fra Københavns Universitet opfordrer til, at den nye erhvervsstrategi for life science og biotek følges op af en strategi for offentlig forskning og uddannelse.
Kroer, Niels & Lisby, Michael, May 2021, In: MedWatch.Research output: Contribution to journal › Contribution to newspaper - Feature article › Communication
- Published
Bacterial Viruses Subcommittee and Archaeal Viruses Subcommittee of the ICTV: update of taxonomy changes in 2021
Krupovic, M., Turner, D., Morozova, V., Dyall-Smith, M., Oksanen, H. M., Edwards, R., Dutilh, B. E., Lehman, S. M., Reyes, A., Baquero, D. P., Sullivan, M. B., Uchiyama, J., Nakavuma, J., Barylski, J., Young, M. J., Du, S., Alfenas-Zerbini, P., Kushkina, A., Kropinski, A. M., Kurtböke, I. & 29 others, , 2021, In: Archives of Virology. 166, 11, p. 3239-3244 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A type III-A CRISPR-Cas system mediates co-transcriptional DNA cleavage at the transcriptional bubbles in close proximity to active effectors
Lin, Jinzhong, Shen, Y., Ni, J. & She, Q., 2021, In: Nucleic Acids Research. 49, 13, p. 7628-7643 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Antibiotic Tolerance and Persistence Studied Throughout Bacterial Growth Phases
Maffei, E., Fino, C. & Harms, A., 2021, Bacterial Persistence: Methods and Protocols. Verstraeten, N. & Michiels, J. (eds.). 2. ed. ed. Humana Press, p. 23-40 18 p. (Methods in Molecular Biology, Vol. 2357).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Large Intronic Deletion of the Fragile Site Gene PRKN Dramatically Lowers Its Fragility Without Impacting Gene Expression
Munk, S. H. N., Voutsinos, Vasileios & Østergaard, Vibe Hallundbæk, 2021, In: Frontiers in Genetics. 12, 9 p., 695172.Research output: Contribution to journal › Journal article › Research › peer-review
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Receptor-like kinase complexes in plant innate immunity
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MAP kinase cascades in Arabidopsis innate immunity
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relax: the analysis of biomolecular kinetics and thermodynamics using NMR relaxation dispersion data
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