- 2020
- Published
Structures of the Cmr-β Complex Reveal the Regulation of the Immunity Mechanism of Type III-B CRISPR-Cas
Sofos, N., Feng, M., Stella, S., Pape, T., Fuglsang, Anders, Lin, Jinzhong, Huang, Q., Li, Y., She, Q. & Montoya, Guillermo, 2020, In: Molecular Cell. 79, 5, p. 741-757Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Draft Genome of Coelastrum proboscideum (Sphaeropleales, Chlorophyta)
Liang, H., Wang, H., Xu, Y., Li, L., Melkonian, B., Lorenz, M., Friedl, T., Sahu, S. K., Yu, J., Liu, Huan, Melkonian, M. & Wang, S., 2020, In: Protist. 171, 5, 7 p., 125758.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Role of Efflux Pumps in the Transition from Low-Level to Clinical Antibiotic Resistance
Ebbensgaard, Anna Elisabeth, Løbner-Olesen, Anders & Frimodt-Møller, Jakob, 2020, In: Antibiotics. 9, 12, 7 p., 855.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Roles of Bacterial DNA Double-Strand Break Repair Proteins in Chromosomal DNA Replication
Sinha, A. K., Possoz, C. & Leach, D. R. F., 2020, In: FEMS Microbiology Reviews. 44, 3, p. 351-368Research output: Contribution to journal › Review › Research › peer-review
- Published
The ZGRF1 Helicase Promotes Recombinational Repair of Replication-Blocking DNA Damage in Human Cells
Brannvoll, A., Xue, X., Kwon, Y., Kompocholi, Smaragda, Simonsen, Anne Katrine Wrist, Bagge, Keerthana Stine Viswalingam, Gonzalez, L., Hickson, Ian David, Østergaard, Vibe Hallundbæk, Mankouri, H. W., Sung, P. & Lisby, Michael, 2020, In: Cell Reports. 32, 1, 25 p., 107849.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The draft genome of mandrill (Mandrillus sphinx): an Old World monkey
Yin, Y., Yang, T., Liu, Huan, Huang, Z., Zhang, Y., Song, Y., Wang, W., Guang, X., Sahu, S. K. & Kristiansen, Karsten, 2020, In: Scientific Reports. 10, 8 p., 2431.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants
Li, L., Wang, S., Wang, H., Sahu, S. K., Marin, B., Li, H., Xu, Y., Liang, H., Li, Z., Cheng, S., Reder, T., Çebi, Z., Wittek, S., Petersen, M., Melkonian, B., Du, H., Yang, H., Wang, J., Wong, G. K-S., Xu, X. & 4 others, , 2020, In: Nature Ecology and Evolution. 4, 9, p. 1220-1231Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Thresholds for clinical importance were defined for the European Organisation for Research and Treatment of Cancer Computer Adaptive Testing Core-an adaptive measure of core quality of life domains in oncology clinical practice and research
Giesinger, J. M., Loth, F. L. C., Aaronson, N. K., Arraras, J. I., Caocci, G., Efficace, F., Grønvold, Mogens, van Leeuwen, M., Petersen, Morten, Ramage, J., Tomaszewski, K. A., Young, T., Holzner, B. & EORTC Quality of Life Group, E. Q. O. L. G., 2020, In: Journal of Clinical Epidemiology. 117, p. 117-125 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Thresholds for clinical importance were established to improve interpretation of the EORTC QLQ-C30 in clinical practice and research
Giesinger, J. M., Loth, F. L. C., Aaronson, N. K., Arraras, J. I., Caocci, G., Efficace, F., Grønvold, Mogens, van Leeuwen, M., Petersen, Morten, Ramage, J., Tomaszewski, K. A., Young, T., Holzner, B. & EORTC Quality of Life Group, E. Q. O. L. G., 2020, In: Journal of Clinical Epidemiology. 118, p. 1-8 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Type II and type IV toxin-antitoxin systems show different evolutionary patterns in the global Klebsiella pneumoniae population
Horesh, G., Fino, C., Harms, A., Dorman, M. J., Parts, L., Gerdes, K., Heinz, E. & Thomson, N. R., 2020, In: Nucleic Acids Research. 48, 8, p. 4357-4370 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Type IV CRISPR-Cas systems are highly diverse and involved in competition between plasmids
Pinilla Redondo, Rafael, Mayo-Muñoz, D., Russel, J., Garrett, Roger Antony, Randau, L., Sørensen, Søren Johannes & Shah, S. A., 2020, In: Nucleic Acids Research. 48, 4, p. 2000-2012 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Valine-Induced Isoleucine Starvation in Escherichia coli K-12 Studied by Spike-In Normalized RNA Sequencing
Gummesson, Bertil, Shah, S. A., Borum, A. S., Fessler, M., Mitarai, Namiko, Sørensen, Michael Askvad & Svenningsen, Sine Lo, 2020, In: Frontiers in Genetics. 11, 17 p., 144.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Virulence, Resistance, and Genomic Fingerprint Traits of Vibrio cholerae Isolated from 12 Species of Aquatic Products in Shanghai, China
Fu, H., Yu, P., Liang, W., Kan, B., Peng, Xu & Chen, L., 2020, In: Microbial Drug Resistance. 26, 12, p. 1526-1539 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2019
- Published
Development and Psychometric Evaluation of an Item Bank for Computerized Adaptive Testing of the EORTC Insomnia Dimension in Cancer Patients (EORTC CAT-SL)
Dirven, L., Petersen, Morten, Aaronson, N. K., Chie, W., Conroy, T., Costantini, A., Hammerlid, E., Velikova, G., Verdonck-de Leeuw, I. M., Young, T. & Grønvold, Mogens, 6 Dec 2019, In: Applied Research in Quality of Life. 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Birth and Resuscitation of (p)ppGpp Induced Antibiotic Tolerant Persister Cells
Svenningsen, Mikkel Skjoldan, Veress, A., Harms, A., Mitarai, Namiko & Semsey, S., 15 Apr 2019, In: Scientific Reports. 9, 13 p., 6056.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comprehensive profiling of the fission yeast transcription start site activity during stress and media response
Thodberg, Malte, Thieffry, A., Lange, Jette Bornholdt, Boyd, M., Holmberg, Christian, Azad, A., Workman, C. T., Chen, Y., Ekwall, K., Nielsen, Olaf & Sandelin, Albin Gustav, 28 Feb 2019, In: Nucleic Acids Research. 47, 4, p. 1671-1691 21 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
(p)ppGpp Regulates a Bacterial Nucleosidase by an Allosteric Two-Domain Switch
ZHANG, YONG, Bærentsen, R. L., Fuhrer, T., Sauer, U., Gerdes, K. & Brodersen, D. E., 2019, In: Molecular Cell. 74, 6, p. 1239-1249, e1-e4Research output: Contribution to journal › Journal article › Research › peer-review
- Published
(p)ppGpp-mediated stress response induced by defects in outer membrane biogenesis and ATP production promotes survival in Escherichia coli
Roghanian, Mohammad, Semsey, S., Løbner-Olesen, Anders & Jalalvand, F., 2019, In: Scientific Reports. 9, p. 1-11 2934.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Escherichia coli belonging to ST131 rarely transfers blactx-m-15 to fecal Escherichia coli
Thingholm, K. R., Hertz, F. B., Løbner-Olesen, Anders, Frimodt-Møller, N. & Nielsen, K. L., 2019, In: Infection and Drug Resistance. 12, p. 2429-2435Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Schinus terebinthifolia leaf lectin (SteLL) has anti-infective action and modulates the response of Staphylococcus aureus-infected macrophages
Lima, I. M. D. S. F., Zagmignan, A., Santos, D. M., Maia, H. S., Silva, L. D. S., Cutrim, B. D. S., Vieira, S. L., Filho, C. M. B., de Sousa, E. M., Napoleão, T. H., Krogfelt, K. A., Løbner-Olesen, Anders, Paiva, P. M. G. & da Silva, L. C. N., 2019, In: Scientific Reports. 9, 14 p., 18159.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A Novel Fluorescence-Based Screen for Inhibitors of the Initiation of DNA Replication in Bacteria
Klitgaard, R. N. & Løbner-Olesen, Anders, 2019, In: Current Drug Discovery Technologies. 16, 3, p. 272-277Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A novel type III CRISPR-Cas system in Lactobacilli: Molecular mechanisms and its application potential
Lin, Jinzhong, 2019, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
A seed motif for target RNA capture enables efficient immune defence by a type III-B CRISPR-Cas system
Pan, S., Li, Q., Deng, Ling, Jiang, S., Jin, X., Peng, N., Liang, Y., She, Q. & Li, Y., 2019, In: RNA Biology. 16, 9, p. 1166-1178Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Antibacterial mechanisms of GN-2 derived peptides and peptoids against Escherichia coli
Saporito, P., Biljana, M., Løbner-Olesen, Anders & Jenssen, H., 2019, In: Biopolymers. 110, 6, 9 p., e23275.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CRP Interacts Specifically With Sxy to Activate Transcription in Escherichia coli
Søndberg, E., Sinha, A. K., Gerdes, K. & Semsey, S., 2019, In: Frontiers in Microbiology. 10, 8 p., 2053.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cmr3 regulates the suppression on cyclic oligoadenylate synthesis by tag complementarity in a Type III-B CRISPR-Cas system
Guo, T., Zheng, F., Zeng, Z., Yang, Y., Li, Q., She, Q. & Han, W., 2019, In: RNA Biology. 16, 10, p. 1513-1520Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative activity of ceftriaxone, ciprofloxacin and gentamicin as a function of bacterial growth rate probed by Escherichia coli chromosome replication in the mouse peritonitis model
Haugan, M. S., Løbner-Olesen, Anders & Frimodt-Møller, N., 2019, In: Antimicrobial Agents and Chemotherapy. 63, 2, 13 p., e-02133-18.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative genomics for non-O1/O139 Vibrio cholerae isolates recovered from the Yangtze River Estuary versus V. cholerae representative isolates from serogroup O1
Gong, L., Yu, P., Zheng, H., Gu, W., He, W., Tang, Y., Wang, Y., Dong, Y., Peng, Xu, She, Q., Xie, L. & Chen, L., 2019, In: Molecular Genetics and Genomics. 294, 2, p. 417-430Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comprehensive search for accessory proteins encoded with archaeal and bacterial type III CRISPR-cas gene cassettes reveals 39 new cas gene families
Shah, S. A., Alkhnbashi, O. S., Behler, J., Han, W., She, Q., Hess, W. R., Garrett, Roger Antony & Backofen, R., 2019, In: RNA Biology. 16, 4, p. 530-542 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Current View of the Mechanisms Controlling the Transcription of the TOL Plasmid Aromatic Degradation Pathways
Domínguez-Cuevas, P. & Marqués, S., 2019, Aerobic Utilization of Hydrocarbons, Oils, and Lipids. Rojo, F. (ed.). Springer, p. 573-594 (Handbook of Hydrocarbon and Lipid Microbiology).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Efflux-Pump Upregulation: From Tolerance to High-level Antibiotic Resistance?
Frimodt-Møller, Jakob & Løbner-Olesen, Anders, 2019, In: Trends in Microbiology. 27, 4, p. 291-293Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Esc2 promotes telomere stability in response to DNA replication stress
Jørgensen, S. W., Liberti, S. E., Larsen, N. B., Lisby, Michael, Mankouri, H. W. & Hickson, Ian David, 2019, In: Nucleic Acids Research. 47, 9, p. 4597-4611 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evolution of the bacterial nucleosidase PpnN and its relation to the stringent response
Bærentsen, R. L., Brodersen, D. E. & ZHANG, YONG, 2019, In: Microbial Cell Factories. 6, 9, p. 450-453Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Examination of bacterial growth rate during host infection and its importance for antimicrobial treatment
Haugan, M. S., 2019, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Fatty acid starvation activates RelA by depleting lysine precursor pyruvate
Sinha, A. K., Winther, K. S., Roghanian, Mohammad & Gerdes, K., 2019, In: Molecular Microbiology. 112, 4, p. 1339-1349Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Functions of Orc1-2 in the DNA damageresponsive regulation in Sulfolobus islandicus
Sun, M., 2019, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Gene Expression Changes with Minor Effects on the Population Average Have Major Effects on the Occurrence of Cells with Extreme Protein Concentrations
Svenningsen, Mikkel Skjoldan, Semsey, S. & Mitarai, Namiko, 2019, In: mSphere. 4, 1, p. 1-6 e00575-18.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Growth Rate of Escherichia coli During Human Urinary Tract Infection: Implications for Antibiotic Effect
Haugan, M. S., Hertz, F. B., Charbon, Godefroid, Sahin, B., Løbner-Olesen, Anders & Frimodt-Møller, N., 2019, In: Antibiotics. 8, 3, 12 p., 92.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Guidelines for DNA recombination and repair studies: cellular assays of DNA repair pathways
Klein, H. L., Bacinskaja, G., Che, J., Cheblal, A., Elango, R., Epshtein, A., Fitzgerald, D. M., Gómez-González, B., Khan, S. R., Kumar, S., Leland, B. A., Marie, L., Mei, Q., Miné-Hattab, J., Piotrowska, A., Polleys, E. J., Putnam, C. D., Radchenko, E. A., Saada, A. A., Sakofsky, C. J. & 28 others, , 2019, In: Microbial Cell Factories. 6, 1, p. 1-64Research output: Contribution to journal › Review › Research › peer-review
- Published
Inhibition of Type III CRISPR-Cas Immunity by an Archaeal Virus-Encoded Anti-CRISPR Protein
Bhoobalan, Yuvaraj, Johansen, T. B., Di Cianni, N. & Peng, Xu, 2019, In: Cell. 179, 2, p. 448-458, e1-e11Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Intramolecular Interactions Dominate the Autoregulation of Escherichia coli Stringent Factor RelA
Turnbull, K. J., Dzhygyr, I., Lindemose, Søren, Hauryliuk, V. & Roghanian, Mohammad, 2019, In: Frontiers in Microbiology. 10, 12 p., 1966.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Investigation of the Sulfolobus islandicus III-B Cmr-α CRISPR-Cas system and SMV1 anti-CRISPR activity
Guo, T., 2019, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Mating-type switching by homology-directed recombinational repair: a matter of choice
Thon, Genevieve, Maki, T., Haber, J. E. & Iwasaki, H., 2019, In: Current Genetics. 65, 2, p. 351-362Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Molecular evidence for origin, diversification and ancient gene duplication of plant subtilases (SBTs)
Xu, Y., Wang, S., Li, L., Sahu, S. K., Petersen, Morten, Liu, X., Melkonian, M., Zhang, G. & Liu, Huan, 2019, In: Scientific Reports. 9, 10 p., 12485.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Phylogenomics Provides New Insights into Gains and Losses of Selenoproteins among Archaeplastida
Liang, H., Wei, T., Xu, Y., Li, L., Sahu, S. K., Wang, H., Li, H., Fu, X., Zhang, G., Melkonian, M., Liu, X., Wang, S. & Liu, Huan, 2019, In: International Journal of Molecular Sciences (Online). 20, 12, 14 p., 3020.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Predicted highly derived class 1 CRISPR-Cas system in Haloarchaea containing diverged Cas5 and Cas7 homologs but no CRISPR array
Makarova, K. S., Karamycheva, S., Shah, S. A., Vestergaard, G. A., Garrett, Roger Antony & Koonin, E. V., 2019, In: FEMS Microbiology Letters. 366, 7, 5 p., fnz079.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Quantitative sensing and signalling of single-stranded DNA during the DNA damage response
Bantele, S. C. S., Lisby, Michael & Pfander, B., 2019, In: Nature Communications. 10, p. 1-12 944.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Regulation of BRCA2 by the Protein Phosphatase 2A
Ambjørn, Sara Marie, 2019, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Regulation of Ribonucleotide Reductase and Screening for Species-Specific Inhibitors in Fission Yeast
Løvschal, K. V., 2019, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Serine-Threonine Kinases Encoded by Split hipA Homologs Inhibit Tryptophanyl-tRNA Synthetase
Nielsen, S. V., Turnbull, K. J., Roghanian, Mohammad, Bærentsen, R., Semanjski, M., Brodersen, D. E., Macek, B. & Gerdes, K., 2019, In: mBio. 10, 3, 16 p., e-01138-19.Research output: Contribution to journal › Journal article › Research › peer-review
Most downloads
-
3290
downloads
Receptor-like kinase complexes in plant innate immunity
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
3249
downloads
MAP kinase cascades in Arabidopsis innate immunity
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
3177
downloads
relax: the analysis of biomolecular kinetics and thermodynamics using NMR relaxation dispersion data
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Latest publications
Bacterial chromosomes and their replication
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
PICH deficiency limits the progression of MYC-induced B-cell lymphoma
Research output: Contribution to journal › Journal article › Research › peer-review
Going through changes - the role of autophagy during reprogramming and differentiation
Research output: Contribution to journal › Review › Research › peer-review