Structural variations between small alarmone hydrolase dimers support different modes of regulation of the stringent response
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Structural variations between small alarmone hydrolase dimers support different modes of regulation of the stringent response. / Bisiak, Francesco; Chrenková, Adriana; Zhang, Sheng-Da; Pedersen, Jannik N.; Otzen, Daniel E.; Zhang, Yong E.; Brodersen, Ditlev E.
In: Journal of Biological Chemistry, Vol. 298, No. 7, 102142, 2022.Research output: Contribution to journal › Journal article › Research › peer-review
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TY - JOUR
T1 - Structural variations between small alarmone hydrolase dimers support different modes of regulation of the stringent response
AU - Bisiak, Francesco
AU - Chrenková, Adriana
AU - Zhang, Sheng-Da
AU - Pedersen, Jannik N.
AU - Otzen, Daniel E.
AU - Zhang, Yong E.
AU - Brodersen, Ditlev E.
N1 - Publisher Copyright: © 2022 The Authors
PY - 2022
Y1 - 2022
N2 - The bacterial stringent response involves wide-ranging metabolic reprogramming aimed at increasing long-term survivability during stress conditions. One of the hallmarks of the stringent response is the production of a set of modified nucleotides, known as alarmones, which affect a multitude of cellular pathways in diverse ways. Production and degradation of these molecules depend on the activity of enzymes from the RelA/SpoT homologous family, which come in both bifunctional (containing domains to both synthesize and hydrolyze alarmones) and monofunctional (consisting of only synthetase or hydrolase domain) variants, of which the structure, activity, and regulation of the bifunctional RelA/SpoT homologs have been studied most intensely. Despite playing an important role in guanosine nucleotide homeostasis in particular, mechanisms of regulation of the small alarmone hydrolases (SAHs) are still rather unclear. Here, we present crystal structures of SAH enzymes from Corynebacterium glutamicum (RelHCg) and Leptospira levettii (RelHLl) and show that while being highly similar, structural differences in substrate access and dimer conformations might be important for regulating their activity. We propose that a varied dimer form is a general property of the SAH family, based on current structural information as well as prediction models for this class of enzymes. Finally, subtle structural variations between monofunctional and bifunctional enzymes point to how these different classes of enzymes are regulated.
AB - The bacterial stringent response involves wide-ranging metabolic reprogramming aimed at increasing long-term survivability during stress conditions. One of the hallmarks of the stringent response is the production of a set of modified nucleotides, known as alarmones, which affect a multitude of cellular pathways in diverse ways. Production and degradation of these molecules depend on the activity of enzymes from the RelA/SpoT homologous family, which come in both bifunctional (containing domains to both synthesize and hydrolyze alarmones) and monofunctional (consisting of only synthetase or hydrolase domain) variants, of which the structure, activity, and regulation of the bifunctional RelA/SpoT homologs have been studied most intensely. Despite playing an important role in guanosine nucleotide homeostasis in particular, mechanisms of regulation of the small alarmone hydrolases (SAHs) are still rather unclear. Here, we present crystal structures of SAH enzymes from Corynebacterium glutamicum (RelHCg) and Leptospira levettii (RelHLl) and show that while being highly similar, structural differences in substrate access and dimer conformations might be important for regulating their activity. We propose that a varied dimer form is a general property of the SAH family, based on current structural information as well as prediction models for this class of enzymes. Finally, subtle structural variations between monofunctional and bifunctional enzymes point to how these different classes of enzymes are regulated.
KW - alarmone
KW - Corynebacterium glutamicum
KW - crystal structure
KW - enzymology
KW - Leptospira levettii
KW - SAH
KW - stress response
KW - stringent response
KW - X-ray crystallography
U2 - 10.1016/j.jbc.2022.102142
DO - 10.1016/j.jbc.2022.102142
M3 - Journal article
C2 - 35714769
AN - SCOPUS:85134253588
VL - 298
JO - Journal of Biological Chemistry
JF - Journal of Biological Chemistry
SN - 0021-9258
IS - 7
M1 - 102142
ER -
ID: 316067579