Mathias Middelboe

Mathias Middelboe

Professor

ORCID: 0000-0002-9587-9171

Publication year:
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51 - 100 out of 138Page size: 50
  1. 2015
  2. Published

    A multitrophic model to quantify the effects of marine viruses on microbial food webs and ecosystem processes

    Weitz, J. S., Stock, C. A., Wilhelm, S. W., Bourouiba, L., Coleman, M. L., Buchan, A., Follows, M. J., Fuhrman, J. A., Jover, L. F., Lennon, J. T., Middelboe, Mathias, Sonderegger, D. L., Suttle, C. A., Taylor, B. P., Frede Thingstad, T., Wilson, W. H. & Eric Wommack, K., 2015, In: ISME Journal. 9, p. 1352–1364 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Autofluorescence imaging system to discriminate and quantify the distribution of benthic cyanobacteria and diatoms

    Carreira, C., Staal, M. J., Middelboe, Mathias & Brussaard, C. P. D., 2015, In: Limnology and Oceanography: Methods. 13, 4, p. 169-177 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Bacteriophage resistance mechanisms in the fish pathogen Flavobacterium psychrophilum: linking genomic mutations to changes in bacterial virulence factors

    Castillo Bermúdez, D. E., Cristiansen, R. H., Dalsgaard, I., Madsen, L. & Middelboe, Mathias, 2015, In: Applied and Environmental Microbiology. 81, 3, p. 1157-1167 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Changes in the composition and bioavailability of dissolved organic matter during sea ice formation

    Jørgensen, L., Stedmon, C. A., Kaartokallio, H., Middelboe, Mathias & Thomas, D. N., 2015, In: Limnology and Oceanography. 60, 3, p. 817-830 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Counting viruses and bacteria in photosynthetic microbial mats

    Carreira, C., Staal, M. J., Middelboe, Mathias & Brussaard, C. P. D., 2015, In: Applied and Environmental Microbiology. 81, 6, p. 2149-2155 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Disruption of photoautotrophic intertidal mats by filamentous fungi

    Carreira, C., Staal, M. J., Falkoski, D., de Vries, R. P., Middelboe, Mathias & Brussaard, C. P. D., 2015, In: Environmental Microbiology. 17, 8, p. 2910-2921 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Draft genome sequence of Vibrio parahaemolyticus VH3, isolated from an Aquaculture environment in Greece

    Castillo Bermúdez, D. E., Jun, J. W., D'Alvise, P., Middelboe, Mathias, Gram, L., Liu, S. & Katharios, P., 2015, In: Genome Announcements. 3, 4, 2 p., e00731-15.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Draft genome sequences of Vibrio alginolyticus strains V1 and V2, opportunistic marine pathogens

    Castillo Bermúdez, D. E., D'Alvise, P., Kalatzis, Panagiotis, Kokkari, C., Middelboe, Mathias, Gram, L., Liu, S. & Katharios, P., 2015, In: Genome Announcements. 3, 4, 2 p., e00729-15.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Draft genome sequences of the fish pathogen Vibrio harveyi strains VH2 and VH5

    Castillo Bermúdez, D. E., D'Alvise, P., Middelboe, Mathias, Gram, L., Liu, S., Kalatzis, Panagiotis, Kokkari, C. & Katharios, P., 2015, In: Genome Announcements. 3, 5, 2 p., e01062-15.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Microscale spatial distributions of microbes and viruses in intertidal photosynthetic microbial mats

    Carreira, C., Piel, T., Staal, M. J., Stuut, J. W., Middelboe, Mathias & Brussaard, C. P. D., 2015, In: SpringerPlus. 4, 11 p., 239.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Oceanography and the base of the pelagic food web in the southern Indian Ocean

    Visser, A. W., Nielsen, T. G., Middelboe, Mathias, Høyer, J. L. & Markager, S., 2015, In: Journal of Plankton Research. 37, 3, p. 571-583 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Quorum sensing determines the choice of antiphage defense strategy in Vibrio anguillarum

    Tan, D., Svenningsen, Sine Lo & Middelboe, Mathias, 2015, In: mBio. 6, 3, 10 p., e00627-15.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Vibriophages differentially influence biofilm formation by Vibrio anguillarum strains

    Tan, D., Dahl, A. & Middelboe, Mathias, 2015, In: Applied and Environmental Microbiology. 81, 13, p. 4489-4497 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. 2014
  16. Published

    Antagonistic coevolution of marine planktonic viruses and their hosts

    Martiny, J. B. H., Riemann, Lasse, Marston, M. F. & Middelboe, Mathias, 2014, In: Annual Review of Marine Science. 6, p. 393-414 22 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Complete genome sequence of Vibrio anguillarum phage CHOED successfully used for phage therapy in aquaculture

    Romero, J., Higuera, G., Gajardo, F., Castillo Bermúdez, D. E., Middelboe, Mathias, García, K., Ramírez, C. & Espejo, R. T., 2014, In: Genome Announcements. 2, 4, 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Detection and quantification of Flavobacterium psychrophilum-specific bacteriophages In Vivo in rainbow trout upon oral administration: implications for disease control in aquaculture

    Christiansen, R. H., Dalsgaard, I., Middelboe, Mathias, Lauritsen, A. H. & Madsen, L., 2014, In: Applied and Environmental Microbiology. 80, 24, p. 7683-7693 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Dissecting the role of viruses in marine nutrient cycling: bacterial uptake of D- and L-amino acids released by viral lysis

    Shelford, E. J., Jørgensen, Niels O. G., Rasmussen, S., Suttle, C. A. & Middelboe, Mathias, 2014, In: Aquatic Microbial Ecology. 73, 3, p. 235-243 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Diversity and geographical distribution of Flavobacterium psychrophilum isolates and their phages: patterns of susceptibility to phage infection and phage host range

    Castillo Bermúdez, D. E., Christiansen, R. H., Espejo, R. & Middelboe, Mathias, 2014, In: Microbial Ecology. 67, 4, p. 748-757 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Genomic structure of bacteriophage 6H and its distribution as prophage in Flavobacterium psychrophilum strains

    Castillo Bermúdez, D. E., Espejo, R. & Middelboe, Mathias, 2014, In: FEMS Microbiology Letters. 351, 1, p. 51-58 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Increased acidification has a profound effect on the interactions between the cyanobacterium Synechococcus sp. WH7803 and its viruses

    Traving, Sachia Jo, Clokie, M. R. J. & Middelboe, Mathias, 2014, In: F E M S Microbiology Ecology. 87, 1, p. 133-141 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Production and transformation of dissolved neutral sugars and amino acids by bacteria in seawater

    Jørgensen, L., Lechtenfeld, O. J., Benner, R., Middelboe, Mathias & Stedmon, C. A., 2014, In: Biogeosciences. 11, p. 5349-5363 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Recent sediment dynamics in hadal trenches: evidence for the influence of higher-frequency (tidal, near-inertial) fluid dynamics

    Turnewitsch, R., Falahat, S., Stehlikova, J., Oguri, K., Glud, R. N., Middelboe, Mathias, Kitazato, H., Wenzhoefer, F., Ando, K., Fujio, S. & Yanagimoto, D., 2014, In: Deep-Sea Research Part I: Oceanographic Research Papers. 90, p. 125-138 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Seasonal dynamics of autotrophic and heterotrophic plankton metabolism and PCO2 in a subarctic Greenland fjord

    Sejr, M. K., Krause-Jensen, D., Dalsgaard, T., Ruiz-Halpern, S., Duarte, C. M., Middelboe, Mathias, Glud, R. N., Bendtsen, J., Balsby, T. J. S. & Rysgaard, S., 2014, In: Limnology and Oceanography. 59, 5, p. 1764-1778 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Tracing the long-term microbial production of recalcitrant fluorescent dissolved organic matter in seawater

    Jørgensen, L., Stedmon, C. A., Granskog, M. A. & Middelboe, Mathias, 2014, In: Geophysical Research Letters. 41, 7, p. 2481-2488 8 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  27. Published

    Vibriophages and their interactions with the fish pathogen Vibrio anguillarum

    Tan, D., Gram, L. & Middelboe, Mathias, 2014, In: Applied and Environmental Microbiology. 80, 10, p. 3128-3140 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. 2013
  29. Published

    Dispersal and survival of Flavobacterium psychrophilum phages In Vivo in rainbow trout and In Vitro under laboratory conditions: implications for their use in phage therapy

    Madsen, L., Bertelsen, S. K., Dalsgaard, I. & Middelboe, Mathias, 2013, In: Applied and Environmental Microbiology. 79, 16, p. 4853-4861 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Heterogeneous distribution of prokaryotes and viruses at the microscale in a tidal sediment

    Carreira, C., Larsen, M., Glud, R. N., Brussaard, C. P. D. & Middelboe, Mathias, 2013, In: Aquatic Microbial Ecology. 69, 3, p. 183-192 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    High rates of microbial carbon turnover in sediments in the deepest oceanic trench on Earth

    Glud, R. N., Wenzhöfer, F., Middelboe, Mathias, Oguri, K., Turnewitsch, R., Canfield, D. E. & Kitazato, H., 2013, In: Nature Geoscience. 6, p. 284-288 5 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  32. Published

    Low virus to prokaryote ratios in the cold: benthic viruses and prokaryotes in a subpolar marine ecosystem (Hornsund, Svalbard)

    Wrobel, B., Filippini, M., Piwowarczyk, J., Kedra, M., Kulinski, K. & Middelboe, Mathias, 2013, In: International Microbiology. 16, p. 45-52 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Viral lysis of Micromonas pusilla: impacts on dissolved organic matter production and composition

    Lonborg, C., Middelboe, Mathias & Brussaard, C. P. D., 2013, In: Biogeochemistry. 116, 1-3, p. 231-240 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. 2012
  35. Published

    Bacterial carbon cycling in a subarctic fjord: a seasonal study on microbial activity, growth efficiency, and virus-induced mortality in Kobbefjord, Greenland

    Middelboe, Mathias, Glud, R. N. & Sejr, M. K., 2012, In: Limnology and Oceanography. 57, 6, p. 1732-1742 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Cultivated single stranded DNA phages that infect marine Bacteroidetes prove difficult to detect with DNA binding stains

    Holmfeldt, K., Odic, D., Sullivan, M. B., Middelboe, Mathias & Riemann, Lasse, 2012, In: Applied and Environmental Microbiology. 78, 3, p. 892-894

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Diversity of Flavobacterium psychrophilum and the potential use of its phages for protection against bacterial cold water disease in salmonids

    Castillo, D., Higuera, G., Villa, M., Middelboe, Mathias, Dalsgaard, I., Madsen, L. & Espejo, R. T., 2012, In: Journal of Fish Diseases Online. 35, 3, p. 193-201 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Proteinase production in Pseudomonas fluorescens ON2 is affected by carbon sources and allows surface-attached but not planktonic cells to utilize protein for growth in lake water

    Nicolaisen, Mette Haubjerg, Worm, J., Jørgensen, Niels O. G., Middelboe, Mathias & Nybroe, O., 2012, In: F E M S Microbiology Ecology. 80, 1, p. 168-178 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Virus-driven nitrogen cycling enhances phytoplankton growth

    Shelford, E. J., Middelboe, Mathias, Møller, E. F. & Suttle, C. A., 2012, In: Aquatic Microbial Ecology. 66, 1, p. 41-46 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. 2011
  41. Published

    Global trends in the fluorescence characteristics and distribution of marine dissolved organic matter

    Jørgensen, L., Stedmon, C., Kragh, T., Markager, S., Middelboe, Mathias & Søndergaard, M., 2011, In: Marine Chemistry. 126, 1-4, p. 139-148 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Viral abundance and activity in the deep sub-seafloor biosphere

    Middelboe, Mathias, Glud, R. N. & Filippini, M., 2011, In: Aquatic Microbial Ecology. 63, 1, p. 1-8

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. 2010
  44. Published

    Microbial disease in the sea: Effects of viruses on carbon and nutrient cycling

    Middelboe, Mathias, 16 Dec 2010, Infectious Disease Ecology: Effects of Ecosystems on Disease and of Disease on Ecosystems. Princeton University Press, p. 242-259 18 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  45. Published

    Isolation and life cycle characterization of lytic viruses infecting heterotrophic bacteria and cyanobacteria

    Middelboe, Mathias, Chan, A. & Bertelsen, S. K., 2010, Manual of aquatic viral ecology. Wilhelm, S. W., Weinbauer, M. G. & Suttle, C. A. (eds.). Waco, Tex: American Society of Limnology and Oceanography, Inc., p. 118-33 16 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  46. Published

    Separation of free virus from sediments in aquatic systems

    Danovaro, R. & Middelboe, Mathias, 2010, Manual of Aquatic Viral Ecology. Wilhelm, S. W., Weinbauer, M. G. & Suttle, C. A. (eds.). ASLO, p. 74-81 8 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  47. 2009
  48. Published

    Bacteriophages drive strain diversification in a marine Flavobacterium: implications for phage resistance and physiological properties

    Middelboe, Mathias, Holmfeldt, K., Riemann, Lasse, Nybroe, O. & Haaber, J. B. B., 2009, In: Environmental Microbiology. 11, 8, p. 1971-1982 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Viral lysis of Phaeocystis pouchetii: implications for algal population dynamics and heterotrophic C, N and P cycling

    Haaber, J. B. B. & Middelboe, Mathias, 2009, In: ISME Journal. 3, 4, p. 430-441 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. 2008
  51. Published

    Bacterial and viral dynamics during a mass coral spawning period on the Great Barrier Reef

    Patten, N. L., Mitchell, J. G., Middelboe, Mathias, Eyre, B. D., Seuront, L., Harrison, P. L. & Glud, R. N., 2008, In: Aquatic Microbial Ecology. 50, p. 209-220

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Global-scale processes with a nanoscale drive - the role of marine viruses

    Brussard, C. P. D., Wilhelm, S. W., Thinhstad, T. F., Weinbauer, T. F., Bratbak, M. G., Heldal, M., Kimmance, S. A., Middelboe, Mathias, Nagasaki, K., Paul, J. H., Schroeder, D. C., Suttle, C. A., Vaque, D. & Wommack, K. E., 2008, In: ISME Journal. 2, p. 575-578

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    Isolation and characterization of bacteriophages infecting the fish pathogen Flavobacterium psychrophilum

    Stenholm, A. R., Dalsgaard, I. & Middelboe, Mathias, 2008, In: Applied and Environmental Microbiology. 74, 13, p. 4070-4078

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Marine Viruses: Community Dynamics, Diversity and Impact on Microbial Processes

    Breitbart, M., Middelboe, Mathias & Rohwer, F., 2008, Microbial Ecology of the Oceans. Second Edition ed. IEEE Computer Society Press, p. 443-479

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  55. Published

    Microbial Disease in the Sea: Effects of Viruses on Marine Carbon and Nutrient Cycling

    Middelboe, Mathias, 2008, Infections Disease Ecology. Princeton University Press, p. 242-260

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  56. Published

    Struktur og funktion af plankton fødekæden i det Indiske Ocean fra Cape Town til Broome iAustralien. Dansk Ekspeditionsfond 2008

    Nielsen, T. G., Visser, A., Jonasdottir, S., Friis Møller, E., Andersen, M., Larsen, L., Søborg, B., Satapoomin, S., Jaspers, C., Markager, S., Middelboe, M., Martinsen, W., Berendt, A., Hansen, O. S., Hansen, P. J., Woraporn, T., Daugbjerg, N., Hansen, G., Hastrup Jensen, M., Jakobsen, H. H. & 4 others, Henriksen, P., Schlüter, L., Hilligsøe, K. M. & Olesen, Michael, 2008.

    Research output: Contribution to conference › Paper › Research › peer-review

  57. Published

    Viral dynamics in a coastal sediment: seasonal pattern, controlling factors and relations to the pelagic-benthic coupling

    Siem-Jørgensen, M., Glud, R. N. & Middelboe, Mathias, 2008, In: Marine Biology Research. 4, 3, p. 165-179

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    Viruses in freshwater ecosystems: An introduction to the exploration of viruses in new aquatic habitats

    Middelboe, Mathias, Jacquet, S. & Weinbauer, M., 2008, In: Freshwater Biology. 53, 6, p. 1069-1075

    Research output: Contribution to journal › Journal article › Research › peer-review

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