Mathias Middelboe

Mathias Middelboe

Professor

ORCID: 0000-0002-9587-9171

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  1. Published

    Sharp contrasts between freshwater and marine microbial enzymatic capabilities, community composition, and DOM pools in a NE Greenland fjord

    Balmonte, J. P., Hasler-Sheetal, H., Glud, R. N., Andersen, Thorbjørn Joest, Sejr, M. K., Middelboe, Mathias, Teske, A. & Arnosti, C., 2020, In: Limnology and Oceanography. 65, 1, p. 77-95 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Influence of bacterial uptake on deep-ocean dissolved organic carbon

    Bendtsen, J., Lundsgaard, C., Middelboe, Mathias & Archer, D., 2002, In: Global Biogeochemical Cycles. vol. 16(0), p. 1-13

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Marine Viruses: Community Dynamics, Diversity and Impact on Microbial Processes

    Breitbart, M., Middelboe, Mathias & Rohwer, F., 2008, Microbial Ecology of the Oceans. Second Edition ed. IEEE Computer Society Press, p. 443-479

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  4. Published

    Global-scale processes with a nanoscale drive - the role of marine viruses

    Brussard, C. P. D., Wilhelm, S. W., Thinhstad, T. F., Weinbauer, T. F., Bratbak, M. G., Heldal, M., Kimmance, S. A., Middelboe, Mathias, Nagasaki, K., Paul, J. H., Schroeder, D. C., Suttle, C. A., Vaque, D. & Wommack, K. E., 2008, In: ISME Journal. 2, p. 575-578

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Counting viruses and bacteria in photosynthetic microbial mats

    Carreira, C., Staal, M. J., Middelboe, Mathias & Brussaard, C. P. D., 2015, In: Applied and Environmental Microbiology. 81, 6, p. 2149-2155 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Autofluorescence imaging system to discriminate and quantify the distribution of benthic cyanobacteria and diatoms

    Carreira, C., Staal, M. J., Middelboe, Mathias & Brussaard, C. P. D., 2015, In: Limnology and Oceanography: Methods. 13, 4, p. 169-177 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Heterogeneous distribution of prokaryotes and viruses at the microscale in a tidal sediment

    Carreira, C., Larsen, M., Glud, R. N., Brussaard, C. P. D. & Middelboe, Mathias, 2013, In: Aquatic Microbial Ecology. 69, 3, p. 183-192 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Microscale spatial distributions of microbes and viruses in intertidal photosynthetic microbial mats

    Carreira, C., Piel, T., Staal, M. J., Stuut, J. W., Middelboe, Mathias & Brussaard, C. P. D., 2015, In: SpringerPlus. 4, 11 p., 239.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Disruption of photoautotrophic intertidal mats by filamentous fungi

    Carreira, C., Staal, M. J., Falkoski, D., de Vries, R. P., Middelboe, Mathias & Brussaard, C. P. D., 2015, In: Environmental Microbiology. 17, 8, p. 2910-2921 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Diversity of Flavobacterium psychrophilum and the potential use of its phages for protection against bacterial cold water disease in salmonids

    Castillo, D., Higuera, G., Villa, M., Middelboe, Mathias, Dalsgaard, I., Madsen, L. & Espejo, R. T., 2012, In: Journal of Fish Diseases Online. 35, 3, p. 193-201 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Comparative Genomic Analyses of Flavobacterium psychrophilum Isolates Reveals New Putative Genetic Determinants of Virulence Traits

    Castillo, D., Donati, V. L., Jørgensen, J., Sundell, K., Dalsgaard, I., Madsen, L., Wiklund, T. & Middelboe, Mathias, 2021, In: Microorganisms. 9, 8, 15 p., 1658.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Widespread distribution of prophage-encoded virulence factors in marine Vibrio communities

    Castillo, D., Kauffman, K., Hussain, F., Kalatzis, Panagiotis, Rørbo, N., Polz, M. F. & Middelboe, Mathias, 2018, In: Scientific Reports. 8, p. 1-9 9973.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Draft Genome Sequences of Six Vibrio diazotrophicus Strains Isolated from Deep Subsurface Sediments of the Baltic Sea

    Castillo, D., Vandieken, V., Engelen, B., Engelhardt, T. & Middelboe, Mathias, 2018, In: Genome Announcements. 6, 10, p. 1-2 e00081-18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Phage defense mechanisms and their genomic and phenotypic implications in the fish pathogen Vibrio anguillarum

    Castillo, D., Rørbo, N., Jørgensen, J., Lange, J., Tan, D., Kalatzis, Panagiotis, Svenningsen, Sine Lo & Middelboe, Mathias, 2019, In: FEMS Microbiology Ecology. 95, 3, fiz004.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Large Phenotypic and Genetic Diversity of Prophages Induced from the Fish Pathogen Vibrio anguillarum

    Castillo, D., Andersen, N., Kalatzis, Panagiotis & Middelboe, Mathias, 2019, In: Viruses. 11, 11, 15 p., 983.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    In Vitro Evolution of Specific Phages Infecting the Fish Pathogen Flavobacterium psychrophilum

    Castillo, D., Højsting, A. R., Roosvall, A., Smyrlis, G., Jørgensen, J. & Middelboe, Mathias, 2022, In: PHAGE: Therapy, Applications, and Research. 3, 1, p. 28-37 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Genome-informed approach to identify genetic determinants of Flavobacterium psychrophilum phage susceptibility

    Castillo, D., Jørgensen, J., Sundell, K., Madsen, L., Dalsgaard, I., Wiklund, T. & Middelboe, Mathias, 2021, In: Environmental Microbiology. 23, 8, p. 4185-4199 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Bacteriophage resistance mechanisms in the fish pathogen Flavobacterium psychrophilum: linking genomic mutations to changes in bacterial virulence factors

    Castillo Bermúdez, D. E., Cristiansen, R. H., Dalsgaard, I., Madsen, L. & Middelboe, Mathias, 2015, In: Applied and Environmental Microbiology. 81, 3, p. 1157-1167 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Draft genome sequences of the fish pathogen Vibrio harveyi strains VH2 and VH5

    Castillo Bermúdez, D. E., D'Alvise, P., Middelboe, Mathias, Gram, L., Liu, S., Kalatzis, Panagiotis, Kokkari, C. & Katharios, P., 2015, In: Genome Announcements. 3, 5, 2 p., e01062-15.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Genomic structure of bacteriophage 6H and its distribution as prophage in Flavobacterium psychrophilum strains

    Castillo Bermúdez, D. E., Espejo, R. & Middelboe, Mathias, 2014, In: FEMS Microbiology Letters. 351, 1, p. 51-58 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Diversity and geographical distribution of Flavobacterium psychrophilum isolates and their phages: patterns of susceptibility to phage infection and phage host range

    Castillo Bermúdez, D. E., Christiansen, R. H., Espejo, R. & Middelboe, Mathias, 2014, In: Microbial Ecology. 67, 4, p. 748-757 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Draft genome sequences of Vibrio alginolyticus strains V1 and V2, opportunistic marine pathogens

    Castillo Bermúdez, D. E., D'Alvise, P., Kalatzis, Panagiotis, Kokkari, C., Middelboe, Mathias, Gram, L., Liu, S. & Katharios, P., 2015, In: Genome Announcements. 3, 4, 2 p., e00729-15.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Draft genome sequence of Vibrio parahaemolyticus VH3, isolated from an Aquaculture environment in Greece

    Castillo Bermúdez, D. E., Jun, J. W., D'Alvise, P., Middelboe, Mathias, Gram, L., Liu, S. & Katharios, P., 2015, In: Genome Announcements. 3, 4, 2 p., e00731-15.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Comparative genome analyses of Vibrio anguillarum strains reveal a link with pathogenicity traits

    Castillo Bermúdez, D. E., Alvise, P. D., Xu, R., Zhang, F., Middelboe, Mathias & Gram, L., 28 Feb 2017, In: mSystems. 2, 1, 14 p., e00001-17.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Genomic diversity of bacteriophages infecting the fish pathogen Flavobacterium psychrophilum

    Castillo Bermúdez, D. E. & Middelboe, Mathias, 2016, In: F E M S Microbiology Letters. 363, 24, 6 p., fnw272.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Comparative genome analysis provides Insights into the pathogenicity of Flavobacterium psychrophilum

    Castillo Bermúdez, D. E., Christiansen, R. H., Dalsgaard, I., Madsen, L., Espejo, R. & Middelboe, Mathias, 2016, In: P L o S One. 11, 4, 18 p., e0152515.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Primer Registro de Abundancia Viral en Bahia Coliumo y Plataforma Continental Frente a Chile Central: First Record of Viral Abundance in Coliumo Bay and the Continental Shelf off Central Chile.

    Chiang, O. E., Middelboe, Mathias & Quiñones, R. A., 2007, In: Gayana. 71, 1, p. 124-131

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    First Record of Viral Abundance in Coliumo Bay and the Continental Shelf off Central Chile

    Chiang, O. E., Middelboe, Mathias & Quiñones, R. A., 2007, In: Gayana. 71, 1, p. 124-131

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Detection and quantification of Flavobacterium psychrophilum-specific bacteriophages In Vivo in rainbow trout upon oral administration: implications for disease control in aquaculture

    Christiansen, R. H., Dalsgaard, I., Middelboe, Mathias, Lauritsen, A. H. & Madsen, L., 2014, In: Applied and Environmental Microbiology. 80, 24, p. 7683-7693 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Effect of bacteriophages on the growth of Favobacterium psychrophilum and development of phage-resistant strains

    Christiansen, R. H., Madsen, L., Dalsgaard, I., Castillo Bermúdez, D. E., Kalatzis, P. G. & Middelboe, Mathias, 2016, In: Microbial Ecology. 71, 4, p. 845-859 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Separation of free virus from sediments in aquatic systems

    Danovaro, R. & Middelboe, Mathias, 2010, Manual of Aquatic Viral Ecology. Wilhelm, S. W., Weinbauer, M. G. & Suttle, C. A. (eds.). ASLO, p. 74-81 8 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  32. Published

    Interactions between Rainbow Trout Eyed Eggs and Flavobacterium spp. Using a Bath Challenge Model: Preliminary Evaluation of Bacteriophages as Pathogen Control Agents

    Donati, V. L., Dalsgaard, I., Runtuvuori-Salmela, A., Kunttu, H., Jørgensen, J., Castillo, D., Sundberg, L., Middelboe, Mathias & Madsen, L., 2021, In: Microorganisms. 9, 5, 31 p., 971.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Phage-Mediated Control of Flavobacterium psychrophilum in Aquaculture: In vivo Experiments to Compare Delivery Methods

    Donati, V. L., Dalsgaard, I., Sundell, K., Castillo, D., Er-Rafik, M., Clark, J., Wiklund, T., Middelboe, Mathias & Madsen, L., 2021, In: Frontiers in Microbiology. 12, 16 p., 628309.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    The Gut Microbiota of Healthy and Flavobacterium psychrophilum-Infected Rainbow Trout Fry Is Shaped by Antibiotics and Phage Therapies

    Donati, V. L., Madsen, L., Middelboe, Mathias, Strube, M. L. & Dalsgaard, I., 2022, In: Frontiers in Microbiology. 13, 21 p., 771296.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Ny viden om virus' betydning for Jordens kulstofomsætning.

    Drejet, L. & Middelboe, Mathias, 2007, In: Dansk Kemi. 88, 2, p. 11-13

    Research output: Contribution to journal › Journal article › Communication

  36. Published

    Genomic Analysis of Pasteurella atlantica Provides Insight on Its Virulence Factors and Phylogeny and Highlights the Potential of Reverse Vaccinology in Aquaculture

    Ellul, R. M., Kalatzis, Panagiotis, Frantzen, C., Haugland, G. T., Gulla, S., Colquhoun, D. J., Middelboe, Mathias, Wergeland, H. I. & Rønneseth, A., 2021, In: Microorganisms. 9, 6, 22 p., 1215.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Viral abundance and genome size distribution in the sediment and water column of marine and freshwater ecosystems

    Filippini, M. & Middelboe, Mathias, 2007, In: FEMS Microbiology Ecology. 60, p. 397-410

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Virus and bacteria dynamics of a coastal sediment: Implication for benthic carbon cycling.

    Glud, R. N. & Middelboe, Mathias, 2004, In: Limnology and Oceanography. 49(6), p. 2073-2081

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Havbunden - et levested for vigtige aktører i havets husholdning

    Glud, R. N. & Middelboe, Mathias, 2006, In: Naturens Verden. 11/12, p. 2-9

    Research output: Contribution to journal › Journal article › Research

  40. Published

    Distribution of oxygen in surface sediments from central Sagami Bay, Japan: In situ measurements by microelectrodes and planar optodes

    Glud, R. N., Wenzhöfer, F., Tengberg, A., Middelboe, Mathias, Oguri, K. & Kitazato, H., 2005, In: Deep Sea Research - Part I - Oceanographic Research Papers. Part I (52), p. 1974-1987

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    High rates of microbial carbon turnover in sediments in the deepest oceanic trench on Earth

    Glud, R. N., Wenzhöfer, F., Middelboe, Mathias, Oguri, K., Turnewitsch, R., Canfield, D. E. & Kitazato, H., 2013, In: Nature Geoscience. 6, p. 284-288 5 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  42. Published

    Utilization of marine sedimentary dissolved organic nitrogen by native anaerobic bacteria

    Guldberg, L. B., Finster, K., Jørgensen, Niels O. G., Middelboe, Mathias & Lomstein, B. A., 2002, In: Limnology and Oceanography. 47, 6, p. 1712-1722 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Viral lysis of Phaeocystis pouchetii: implications for algal population dynamics and heterotrophic C, N and P cycling

    Haaber, J. B. B. & Middelboe, Mathias, 2009, In: ISME Journal. 3, 4, p. 430-441 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Big Impact of the Tiny: Bacteriophage–Bacteria Interactions in Biofilms

    Hansen, Mads Frederik, Svenningsen, Sine Lo, Røder, Henriette Lyng, Middelboe, Mathias & Burmølle, Mette, 2019, In: Trends in Microbiology. 27, 9, p. 739-752 14 p.

    Research output: Contribution to journal › Review › Research › peer-review

  45. Published

    Effects of allochthonous dissolved organic matter input on microbial composition and nitrogen-cycling genes at two contrasting estuarine sites

    Happel, E. M., Markussen, T. M., Teikari, J. E., Huchaiah, V., Alneberg, J., Andersson, A. F., Sivonen, K., Middelboe, Mathias, Kisand, V. & Riemann, Lasse, 2019, In: F E M S Microbiology Ecology. 95, 9, 10 p., fiz123.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    P. aeruginosa flow-cell biofilms are enhanced by repeated phage treatments but can be eradicated by phage-ciprofloxacin combination: —monitoring the phage–P. aeruginosa biofilms interactions

    Henriksen, K., Rørbo, N., Rybtke, Morten Levin, Martinet, M. G., Tolker-Nielsen, Tim, Høiby, Niels, Middelboe, Mathias & Ciofu, Oana, 2019, In: Pathogens and Disease. 77, 2, 11 p., ftz011.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Dynamics of Baltic Sea phages driven by environmental changes

    Hoetzinger, M., Nilsson, E., Arabi, R., Osbeck, C. M. G., Pontiller, B., Hutinet, G., Bayfield, O. W., Traving, S., Kisand, V., Lundin, D., Pinhassi, J., Middelboe, Mathias & Holmfeldt, K., 2021, In: Environmental Microbiology. 23, 8, p. 4576-4594 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Large variabilities in host strain susceptibility and phage host range govern interactions between lytic marine phages and their Flavobacterium hosts

    Holmfeldt, K., Middelboe, Mathias, Nybroe, O. & Riemann, L., 2007, In: Applied and Environmental Microbiology. 73, 21, p. 6730-6739 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Cultivated single stranded DNA phages that infect marine Bacteroidetes prove difficult to detect with DNA binding stains

    Holmfeldt, K., Odic, D., Sullivan, M. B., Middelboe, Mathias & Riemann, Lasse, 2012, In: Applied and Environmental Microbiology. 78, 3, p. 892-894

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Reversible mutations in gliding motility and virulence genes: A flexible and efficient phage defence mechanism in Flavobacterium psychrophilum

    Jørgensen, J., Sundell, K., Castillo, D., Dramshøj, L. S., Jørgensen, N. B., Madsen, S. B., Landor, L., Wiklund, T., Donati, V. L., Madsen, L., Dalsgaard, I. & Middelboe, Mathias, 2022, In: Environmental Microbiology. 24, 10, p. 4915-4930

    Research output: Contribution to journal › Journal article › Research › peer-review

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