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Diversity of Flavobacterium psychrophilum and the potential use of its phages for protection against bacterial cold water disease in salmonids
Castillo, D., Higuera, G., Villa, M., Middelboe, Mathias, Dalsgaard, I., Madsen, L. & Espejo, R. T., 2012, In: Journal of Fish Diseases Online. 35, 3, p. 193-201 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Comparative Genomic Analyses of Flavobacterium psychrophilum Isolates Reveals New Putative Genetic Determinants of Virulence Traits
Castillo, D., Donati, V. L., Jørgensen, J., Sundell, K., Dalsgaard, I., Madsen, L., Wiklund, T. & Middelboe, Mathias, 2021, In: Microorganisms. 9, 8, 15 p., 1658.Research output: Contribution to journal › Journal article › Research › peer-review
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Genome Sequences of Shewanella baltica and Shewanella morhuae Strains Isolated from the Gastrointestinal Tract of Freshwater Fish
Castillo, D., Gram, L. & Dailey, F. E., 2018, In: Genome Announcements. 6, 25, p. 1-2 e00541-18.Research output: Contribution to journal › Journal article › Research › peer-review
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Large Phenotypic and Genetic Diversity of Prophages Induced from the Fish Pathogen Vibrio anguillarum
Castillo, D., Andersen, N., Kalatzis, Panagiotis & Middelboe, Mathias, 2019, In: Viruses. 11, 11, 15 p., 983.Research output: Contribution to journal › Journal article › Research › peer-review
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Phage defense mechanisms and their genomic and phenotypic implications in the fish pathogen Vibrio anguillarum
Castillo, D., Rørbo, N., Jørgensen, J., Lange, J., Tan, D., Kalatzis, Panagiotis, Svenningsen, Sine Lo & Middelboe, Mathias, 2019, In: FEMS Microbiology Ecology. 95, 3, fiz004.Research output: Contribution to journal › Journal article › Research › peer-review
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Widespread distribution of prophage-encoded virulence factors in marine Vibrio communities
Castillo, D., Kauffman, K., Hussain, F., Kalatzis, Panagiotis, Rørbo, N., Polz, M. F. & Middelboe, Mathias, 2018, In: Scientific Reports. 8, p. 1-9 9973.Research output: Contribution to journal › Journal article › Research › peer-review
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Draft Genome Sequences of Six Vibrio diazotrophicus Strains Isolated from Deep Subsurface Sediments of the Baltic Sea
Castillo, D., Vandieken, V., Engelen, B., Engelhardt, T. & Middelboe, Mathias, 2018, In: Genome Announcements. 6, 10, p. 1-2 e00081-18.Research output: Contribution to journal › Journal article › Research › peer-review
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In Vitro Evolution of Specific Phages Infecting the Fish Pathogen Flavobacterium psychrophilum
Castillo, D., Højsting, A. R., Roosvall, A., Smyrlis, G., Jørgensen, J. & Middelboe, Mathias, 2022, In: PHAGE: Therapy, Applications, and Research. 3, 1, p. 28-37 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Genome-informed approach to identify genetic determinants of Flavobacterium psychrophilum phage susceptibility
Castillo, D., Jørgensen, J., Sundell, K., Madsen, L., Dalsgaard, I., Wiklund, T. & Middelboe, Mathias, 2021, In: Environmental Microbiology. 23, 8, p. 4185-4199 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Complete Genome Sequence of Shewanella sp. WE21, a Rare Isolate with Multiple Novel Large Genomic Islands
Castillo, D., Gram, L. & Dailey, F. E., 2018, In: Genome Announcements. 6, 16, p. 1-2 e00277-18.Research output: Contribution to journal › Journal article › Research › peer-review
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Exploring the Genomic Traits of Non-toxigenic Vibrio parahaemolyticus Strains Isolated in Southern Chile
Castillo Bermúdez, D. E., Pérez-Reytor, D., Plaza, N., Ramírez-Araya, S., Blondel, C. J., Corsini, G., Bastías, R., Loyola, D. E., Jaña, V., Pavez, L. & García, K., 2018, In: Frontiers in Microbiology. 9, 15 p., 161.Research output: Contribution to journal › Journal article › Research › peer-review
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Draft genome sequences of the fish pathogen Vibrio harveyi strains VH2 and VH5
Castillo Bermúdez, D. E., D'Alvise, P., Middelboe, Mathias, Gram, L., Liu, S., Kalatzis, Panagiotis, Kokkari, C. & Katharios, P., 2015, In: Genome Announcements. 3, 5, 2 p., e01062-15.Research output: Contribution to journal › Journal article › Research › peer-review
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Genomic structure of bacteriophage 6H and its distribution as prophage in Flavobacterium psychrophilum strains
Castillo Bermúdez, D. E., Espejo, R. & Middelboe, Mathias, 2014, In: FEMS Microbiology Letters. 351, 1, p. 51-58 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Diversity and geographical distribution of Flavobacterium psychrophilum isolates and their phages: patterns of susceptibility to phage infection and phage host range
Castillo Bermúdez, D. E., Christiansen, R. H., Espejo, R. & Middelboe, Mathias, 2014, In: Microbial Ecology. 67, 4, p. 748-757 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Draft genome sequences of Vibrio alginolyticus strains V1 and V2, opportunistic marine pathogens
Castillo Bermúdez, D. E., D'Alvise, P., Kalatzis, Panagiotis, Kokkari, C., Middelboe, Mathias, Gram, L., Liu, S. & Katharios, P., 2015, In: Genome Announcements. 3, 4, 2 p., e00729-15.Research output: Contribution to journal › Journal article › Research › peer-review
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Draft genome sequence of Vibrio parahaemolyticus VH3, isolated from an Aquaculture environment in Greece
Castillo Bermúdez, D. E., Jun, J. W., D'Alvise, P., Middelboe, Mathias, Gram, L., Liu, S. & Katharios, P., 2015, In: Genome Announcements. 3, 4, 2 p., e00731-15.Research output: Contribution to journal › Journal article › Research › peer-review
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Comparative genome analyses of Vibrio anguillarum strains reveal a link with pathogenicity traits
Castillo Bermúdez, D. E., Alvise, P. D., Xu, R., Zhang, F., Middelboe, Mathias & Gram, L., 28 Feb 2017, In: mSystems. 2, 1, 14 p., e00001-17.Research output: Contribution to journal › Journal article › Research › peer-review
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Genomic diversity of bacteriophages infecting the fish pathogen Flavobacterium psychrophilum
Castillo Bermúdez, D. E. & Middelboe, Mathias, 2016, In: F E M S Microbiology Letters. 363, 24, 6 p., fnw272.Research output: Contribution to journal › Journal article › Research › peer-review
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Comparative genome analysis provides Insights into the pathogenicity of Flavobacterium psychrophilum
Castillo Bermúdez, D. E., Christiansen, R. H., Dalsgaard, I., Madsen, L., Espejo, R. & Middelboe, Mathias, 2016, In: P L o S One. 11, 4, 18 p., e0152515.Research output: Contribution to journal › Journal article › Research › peer-review
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Bacteriophage resistance mechanisms in the fish pathogen Flavobacterium psychrophilum: linking genomic mutations to changes in bacterial virulence factors
Castillo Bermúdez, D. E., Cristiansen, R. H., Dalsgaard, I., Madsen, L. & Middelboe, Mathias, 2015, In: Applied and Environmental Microbiology. 81, 3, p. 1157-1167 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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The impact of human activities on the marine environment quality and health: The EC impacts cluster.
Caumette, P., Bonin, B., Herbert, R., Widdel, F., Grimalt, J., Guerrero, R., Esteve, I., Kühl, Michael, Cohen, Y. & Muyzer, G., 2002, Role of Microbial Mats in the Biodegradation of oil and hydrocarbons in the Coastal Zones (MATBIOL). p. 201-223Research output: Chapter in Book/Report/Conference proceeding › Report chapter › Research
- Published
Preface
Caumette, P., Cohen, Y., Grimalt, J., Herbert, R. & Kühl, Michael, 2004, In: Ophelia. 58, 3, p. 133-134 2 p.Research output: Contribution to journal › Editorial › Research › peer-review
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The determination of standard metabolic rate in fishes
Chabot, D., Steffensen, John Fleng & Farrell, A. P., 2016, In: Journal of Fish Biology. 88, 1, p. 81-121 41 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Quantifying nitrogen fixation by heterotrophic bacteria in sinking marine particles
Chakraborty, S., Andersen, K. H., Visser, A. W., Inomura, K., Follows, M. J. & Riemann, Lasse, 2021, In: Nature Communications. 12, 14 p., 4085.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Diversity in the marine diatom Chaetoceros (Bacillariophyceae) in Thai waters - revisiting Chaetoceros compressus and Chaetoceros contortus
Chamnansinp, A., Moestrup, Øjvind & Lundholm, Nina, 2015, In: Phycologia. 54, 2, p. 161-175 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Physiological levels of nitrate support anoxic growth by denitrification of Pseudomonas aeruginosa at growth rates reported in cystic fibrosis lungs and sputum
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Extreme emission of n2o from tropical wetland soil (pantanal, South America)
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Detailed reconstruction of the musculature in Limnognathia maerski (Micrognathozoa) and comparison with other Gnathifera
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