Marine Biology

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  1. Published

    Species associated with stipes and holdfast of Laminaria hyperborea

    Bruntse, G., Kongsrud, J. A. & Worsaae, Katrine, 1999, Marine benthic algae and invertebrate communities from the shallow waters of the Faroe Islands. p. 50-51

    Research output: Chapter in Book/Report/Conference proceeding › Report chapter › Research

  2. Published

    Discussion

    Bruntse, G., Kongsrud, J. A. & Worsaae, Katrine, 1999, Marine benthic angae and invertebrate communities from the shallow waters of the Faroe Islands. p. 62-65

    Research output: Chapter in Book/Report/Conference proceeding › Preface/postscript › Research

  3. Published

    Global-scale processes with a nanoscale drive - the role of marine viruses

    Brussard, C. P. D., Wilhelm, S. W., Thinhstad, T. F., Weinbauer, T. F., Bratbak, M. G., Heldal, M., Kimmance, S. A., Middelboe, Mathias, Nagasaki, K., Paul, J. H., Schroeder, D. C., Suttle, C. A., Vaque, D. & Wommack, K. E., 2008, In: ISME Journal. 2, p. 575-578

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Chlorosome protein structure and function and the complete genome sequence of Chlorobium tepidum

    Bryant, D. A., Frigaard, Niels-Ulrik, Vassilieva, E. V. & Eisen, J. A., 2001, In: Photosynthesis Research.

    Research output: Contribution to journal › Journal article › Research

  5. Published

    Comparative and functional genomics of anoxygenic green bacteria from the taxa Chlorobi, Chloroflexi, and Acidobacteria

    Bryant, D. A., Liu, Z., Li, T., Zhao, F., Klatt, C. G., Ward, D. M., Frigaard, Niels-Ulrik & Overmann, J., 2012, Functional genomics and evolution of photosynthetic systems. Burnap, R. L. & Vermaas, W. F. J. (eds.). Springer, p. 47-102 56 p. (Advances in Photosynthesis and Respiration, Vol. 33).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  6. Published

    The nutrition of the gill parasitic monogenean Pseudodactylogyrus anguillae

    Buchmann, Kurt, Køie, M. & Prentø, P., 1987, In: Parasitology Reseach. 73, 6, p. 532-537 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Reproductive strategy of two deep-sea scalpellid barnacles (Crustacea: Cirripedia: Thoracica) associated with decapods and pycnogonids and the first description of a penis in scalpellid dwarf males

    Buhl-Mortensen, L. & Høeg, Jens Thorvald, 2013, In: Organisms Diversity & Evolution. 13, 4, p. 545-557 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Exercise metabolism in two species of cod in arctic waters

    Bushnell, P. G., Steffensen, John Fleng, Schurmann, H. & Jones, D. R., 1994, In: Polar Biology. 14, p. 43-48

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Macromolecular capillary permeability of three species of fish.

    Bushnell, P., Steffensen, John Fleng, Brill, R. & Jones, D., 1997, In: The FASEB Journal. 3, p. 558

    Research output: Contribution to journal › Conference abstract in journal › Research

  10. Published

    Reshaping of sandstone surfaces by cryptoendolithic cyanobacteria: bioalkalization causes chemical weathering in arid landscapes

    Büdel, B., Weber, B., Kühl, Michael, Pfanz, H., Sültemeyer, D. & Wessel, D., 2004, In: Geobiology. 2, p. 261-268

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Legally protect marine food web’s lower echelons

    Bürkert, Johanna Sophie, Catonini, Federica, Bittner, Meriel Jennifer, Moedt, Sanne Mariël & Lützenburg, Gregor, 2023, In: Nature. 614, p. 624

    Research output: Contribution to journal › Comment/debate › Research

  12. Published

    Photosynthetic pigment laser-induced fluorescence indicators for the detection of changes associated with trace element stress in the diatom model species Phaeodactylum tricornutum

    Cabrita, M. T., Gameiro, C., Utkin, A. B., Duarte, B., Caçador, I. & Cartaxana, P., 2016, In: Environmental Monitoring and Assessment. 188, 5, 13 p., 285.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Erratum: Gait transition and oxygen consumption in swimming striped perch Embiotoca lateralis Agassiz (Journal of Fish Biology (2006) 69 (1612-1625))

    Cannas, M., Schaefer, J., Domenici, P. & Steffensen, John Fleng, 2007, In: Journal of Fish Biology.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Gait transition and oxygen consumption in swimming striped surfperch Embiotoca lateralis Agassiz

    Cannas, M., Schaefer, J., Domenici, P. & Steffensen, John Fleng, 2006, In: Journal of Fish Biology. 69, 6, p. 1612-1625

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Light-driven oxidation of polysaccharides by photosynthetic pigments and a metalloenzyme

    Cannella, D., Möllers, K. B., Frigaard, Niels-Ulrik, Jensen, Poul Erik, Bjerrum, Morten Jannik, Johansen, Katja Salomon & Felby, C., 2016, In: Nature Communications. 7, 11134.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Hypoxia-induced retinopathy model in adult zebrafish

    Cao, Z., Jensen, L. D., Rouhi, P., Hosaka, K., Lanne, T., Steffensen, John Fleng, Wahlberg, E. & Cao, Y., 1 Dec 2010, In: Nature Protocols (Print). 5, 12, p. 1903-1910 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Counting viruses and bacteria in photosynthetic microbial mats

    Carreira, C., Staal, M. J., Middelboe, Mathias & Brussaard, C. P. D., 2015, In: Applied and Environmental Microbiology. 81, 6, p. 2149-2155 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Autofluorescence imaging system to discriminate and quantify the distribution of benthic cyanobacteria and diatoms

    Carreira, C., Staal, M. J., Middelboe, Mathias & Brussaard, C. P. D., 2015, In: Limnology and Oceanography: Methods. 13, 4, p. 169-177 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Heterogeneous distribution of prokaryotes and viruses at the microscale in a tidal sediment

    Carreira, C., Larsen, M., Glud, R. N., Brussaard, C. P. D. & Middelboe, Mathias, 2013, In: Aquatic Microbial Ecology. 69, 3, p. 183-192 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Microscale spatial distributions of microbes and viruses in intertidal photosynthetic microbial mats

    Carreira, C., Piel, T., Staal, M. J., Stuut, J. W., Middelboe, Mathias & Brussaard, C. P. D., 2015, In: SpringerPlus. 4, 11 p., 239.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Fungi and viruses as important players in microbial mats

    Carreira, C., Lønborg, C., Kühl, Michael, Lillebø, A. I., Sandaa, R., Villanueva, L. & Cruz, S., 2020, In: FEMS Microbiology Ecology. 96, 11, 13 p., fiaa187.

    Research output: Contribution to journal › Review › Research › peer-review

  22. Published

    Disruption of photoautotrophic intertidal mats by filamentous fungi

    Carreira, C., Staal, M. J., Falkoski, D., de Vries, R. P., Middelboe, Mathias & Brussaard, C. P. D., 2015, In: Environmental Microbiology. 17, 8, p. 2910-2921 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    New stalked and sessile cirripedes from the Eocene Mo Clay, northwest Jutland (Denmark)

    Carriol, R., Bonde, N. C., Jakobsen, S. L. & Høeg, Jens Thorvald, 2016, In: Museum National d'Histoire Naturelle. Geodiversitas. 38, 1, p. 21-32 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Kleptoplast photosynthesis is nutritionally relevant in the sea slug Elysia viridis

    Cartaxana, P., Trampe, Erik, Kühl, Michael & Cruz, S., 2017, In: Scientific Reports. 7, 10 p., 7714.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Photosynthesis from stolen chloroplasts can support sea slug reproductive fitness

    Cartaxana, P., Rey, F., LeKieffre, C., Lopes, D., Hubas, C., Spangenberg, J. E., Escrig, S., Jesus, B., Calado, G., Domingues, R., Kühl, Michael, Calado, R., Meibom, A. & Cruz, S., 2021, In: Proceedings of the Royal Society B: Biological Sciences. 288, 1959, 9 p., 20211779.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Diversity of Flavobacterium psychrophilum and the potential use of its phages for protection against bacterial cold water disease in salmonids

    Castillo, D., Higuera, G., Villa, M., Middelboe, Mathias, Dalsgaard, I., Madsen, L. & Espejo, R. T., 2012, In: Journal of Fish Diseases Online. 35, 3, p. 193-201 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Comparative Genomic Analyses of Flavobacterium psychrophilum Isolates Reveals New Putative Genetic Determinants of Virulence Traits

    Castillo, D., Donati, V. L., Jørgensen, J., Sundell, K., Dalsgaard, I., Madsen, L., Wiklund, T. & Middelboe, Mathias, 2021, In: Microorganisms. 9, 8, 15 p., 1658.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Genome Sequences of Shewanella baltica and Shewanella morhuae Strains Isolated from the Gastrointestinal Tract of Freshwater Fish

    Castillo, D., Gram, L. & Dailey, F. E., 2018, In: Genome Announcements. 6, 25, p. 1-2 e00541-18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Large Phenotypic and Genetic Diversity of Prophages Induced from the Fish Pathogen Vibrio anguillarum

    Castillo, D., Andersen, N., Kalatzis, Panagiotis & Middelboe, Mathias, 2019, In: Viruses. 11, 11, 15 p., 983.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Phage defense mechanisms and their genomic and phenotypic implications in the fish pathogen Vibrio anguillarum

    Castillo, D., Rørbo, N., Jørgensen, J., Lange, J., Tan, D., Kalatzis, Panagiotis, Svenningsen, Sine Lo & Middelboe, Mathias, 2019, In: FEMS Microbiology Ecology. 95, 3, fiz004.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Widespread distribution of prophage-encoded virulence factors in marine Vibrio communities

    Castillo, D., Kauffman, K., Hussain, F., Kalatzis, Panagiotis, Rørbo, N., Polz, M. F. & Middelboe, Mathias, 2018, In: Scientific Reports. 8, p. 1-9 9973.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Draft Genome Sequences of Six Vibrio diazotrophicus Strains Isolated from Deep Subsurface Sediments of the Baltic Sea

    Castillo, D., Vandieken, V., Engelen, B., Engelhardt, T. & Middelboe, Mathias, 2018, In: Genome Announcements. 6, 10, p. 1-2 e00081-18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    In Vitro Evolution of Specific Phages Infecting the Fish Pathogen Flavobacterium psychrophilum

    Castillo, D., Højsting, A. R., Roosvall, A., Smyrlis, G., Jørgensen, J. & Middelboe, Mathias, 2022, In: PHAGE: Therapy, Applications, and Research. 3, 1, p. 28-37 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Genome-informed approach to identify genetic determinants of Flavobacterium psychrophilum phage susceptibility

    Castillo, D., Jørgensen, J., Sundell, K., Madsen, L., Dalsgaard, I., Wiklund, T. & Middelboe, Mathias, 2021, In: Environmental Microbiology. 23, 8, p. 4185-4199 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Complete Genome Sequence of Shewanella sp. WE21, a Rare Isolate with Multiple Novel Large Genomic Islands

    Castillo, D., Gram, L. & Dailey, F. E., 2018, In: Genome Announcements. 6, 16, p. 1-2 e00277-18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Exploring the Genomic Traits of Non-toxigenic Vibrio parahaemolyticus Strains Isolated in Southern Chile

    Castillo Bermúdez, D. E., Pérez-Reytor, D., Plaza, N., Ramírez-Araya, S., Blondel, C. J., Corsini, G., Bastías, R., Loyola, D. E., Jaña, V., Pavez, L. & García, K., 2018, In: Frontiers in Microbiology. 9, 15 p., 161.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Draft genome sequences of the fish pathogen Vibrio harveyi strains VH2 and VH5

    Castillo Bermúdez, D. E., D'Alvise, P., Middelboe, Mathias, Gram, L., Liu, S., Kalatzis, Panagiotis, Kokkari, C. & Katharios, P., 2015, In: Genome Announcements. 3, 5, 2 p., e01062-15.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Genomic structure of bacteriophage 6H and its distribution as prophage in Flavobacterium psychrophilum strains

    Castillo Bermúdez, D. E., Espejo, R. & Middelboe, Mathias, 2014, In: FEMS Microbiology Letters. 351, 1, p. 51-58 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Diversity and geographical distribution of Flavobacterium psychrophilum isolates and their phages: patterns of susceptibility to phage infection and phage host range

    Castillo Bermúdez, D. E., Christiansen, R. H., Espejo, R. & Middelboe, Mathias, 2014, In: Microbial Ecology. 67, 4, p. 748-757 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Draft genome sequences of Vibrio alginolyticus strains V1 and V2, opportunistic marine pathogens

    Castillo Bermúdez, D. E., D'Alvise, P., Kalatzis, Panagiotis, Kokkari, C., Middelboe, Mathias, Gram, L., Liu, S. & Katharios, P., 2015, In: Genome Announcements. 3, 4, 2 p., e00729-15.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Draft genome sequence of Vibrio parahaemolyticus VH3, isolated from an Aquaculture environment in Greece

    Castillo Bermúdez, D. E., Jun, J. W., D'Alvise, P., Middelboe, Mathias, Gram, L., Liu, S. & Katharios, P., 2015, In: Genome Announcements. 3, 4, 2 p., e00731-15.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Comparative genome analyses of Vibrio anguillarum strains reveal a link with pathogenicity traits

    Castillo Bermúdez, D. E., Alvise, P. D., Xu, R., Zhang, F., Middelboe, Mathias & Gram, L., 28 Feb 2017, In: mSystems. 2, 1, 14 p., e00001-17.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Genomic diversity of bacteriophages infecting the fish pathogen Flavobacterium psychrophilum

    Castillo Bermúdez, D. E. & Middelboe, Mathias, 2016, In: F E M S Microbiology Letters. 363, 24, 6 p., fnw272.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Comparative genome analysis provides Insights into the pathogenicity of Flavobacterium psychrophilum

    Castillo Bermúdez, D. E., Christiansen, R. H., Dalsgaard, I., Madsen, L., Espejo, R. & Middelboe, Mathias, 2016, In: P L o S One. 11, 4, 18 p., e0152515.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Bacteriophage resistance mechanisms in the fish pathogen Flavobacterium psychrophilum: linking genomic mutations to changes in bacterial virulence factors

    Castillo Bermúdez, D. E., Cristiansen, R. H., Dalsgaard, I., Madsen, L. & Middelboe, Mathias, 2015, In: Applied and Environmental Microbiology. 81, 3, p. 1157-1167 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    The impact of human activities on the marine environment quality and health: The EC impacts cluster.

    Caumette, P., Bonin, B., Herbert, R., Widdel, F., Grimalt, J., Guerrero, R., Esteve, I., Kühl, Michael, Cohen, Y. & Muyzer, G., 2002, Role of Microbial Mats in the Biodegradation of oil and hydrocarbons in the Coastal Zones (MATBIOL). p. 201-223

    Research output: Chapter in Book/Report/Conference proceeding › Report chapter › Research

  47. Published

    Preface

    Caumette, P., Cohen, Y., Grimalt, J., Herbert, R. & Kühl, Michael, 2004, In: Ophelia. 58, 3, p. 133-134 2 p.

    Research output: Contribution to journal › Editorial › Research › peer-review

  48. Published

    The determination of standard metabolic rate in fishes

    Chabot, D., Steffensen, John Fleng & Farrell, A. P., 2016, In: Journal of Fish Biology. 88, 1, p. 81-121 41 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Quantifying nitrogen fixation by heterotrophic bacteria in sinking marine particles

    Chakraborty, S., Andersen, K. H., Visser, A. W., Inomura, K., Follows, M. J. & Riemann, Lasse, 2021, In: Nature Communications. 12, 14 p., 4085.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Diversity in the marine diatom Chaetoceros (Bacillariophyceae) in Thai waters - revisiting Chaetoceros compressus and Chaetoceros contortus

    Chamnansinp, A., Moestrup, Øjvind & Lundholm, Nina, 2015, In: Phycologia. 54, 2, p. 161-175 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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