- 2020
- Published
Inhibition of Escherichia coli chromosome replication by rifampicin treatment or during the stringent response is overcome by de novo DnaA protein synthesis
Riber, Leise & Løbner-Olesen, Anders, 2020, In: Molecular Microbiology. 114, 6, p. 906-919Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Autophagy mediates temporary reprogramming and dedifferentiation in plant somatic cells
Rodriguez, Eleazar, Chevalier, J., Olsen, J., Ansbøl, J., Kapousidou, V., Zuo, Zhangli Thomsen, Svenning, S., Loefke, C., Koemeda, S., Drozdowskyj, P. S., Jez, J., Durnberger, G., Kuenzl, F., Schutzbier, M., Mechtler, K., Ebstrup, E. N., Lolle, S., Dagdas, Y. & Petersen, Morten, 2020, In: EMBO Journal. 39, 4, 11 p., e103315.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Draft genomes of two Artocarpus plants, Jackfruit (A. heterophyllus) and Breadfruit (A. altilis)
Sahu, S. K., Liu, M., Yssel, A., Kariba, R., Muthemba, S., Jiang, S., Song, B., Hendre, P. S., Muchugi, A., Jamnadass, R., Kao, S., Featherston, J., Zerega, N. J. C., Xu, X., Yang, H., Van Deynze, A., Van de Peer, Y., Liu, X. & Liu, Huan, 2020, In: Genes. 11, 1, 27.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A distinct role for recombination repair factors in an early cellular response to transcription-replication conflicts
Shao, Xin, Joergensen, A. M., Howlett, N. G., Lisby, Michael & Østergaard, Vibe Hallundbæk, 2020, In: Nucleic Acids Research. 48, 10, p. 5467-5484 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacterial Chromosome Replication and DNA Repair During the Stringent Response
Sinha, A. K., Løbner-Olesen, Anders & Riber, Leise, 2020, In: Frontiers in Microbiology. 11, 9 p., 582113.Research output: Contribution to journal › Review › Research › peer-review
- Published
The Roles of Bacterial DNA Double-Strand Break Repair Proteins in Chromosomal DNA Replication
Sinha, A. K., Possoz, C. & Leach, D. R. F., 2020, In: FEMS Microbiology Reviews. 44, 3, p. 351-368Research output: Contribution to journal › Review › Research › peer-review
- Published
Structures of the Cmr-β Complex Reveal the Regulation of the Immunity Mechanism of Type III-B CRISPR-Cas
Sofos, N., Feng, M., Stella, S., Pape, T., Fuglsang, Anders, Lin, Jinzhong, Huang, Q., Li, Y., She, Q. & Montoya, Guillermo, 2020, In: Molecular Cell. 79, 5, p. 741-757Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A converging subset of soil bacterial taxa is permissive to the IncP-1 plasmid pKJK5 across a range of soil copper contamination
Song, J., Klümper, U., Riber, Leise, Dechesne, A., Smets, B. F., Sørensen, Søren Johannes & Brandt, Kristian Koefoed, 2020, In: FEMS Microbiology Ecology. 96, 11, 10 p., fiaa200.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Analogues of a Cyclic Antimicrobial Peptide with a Flexible Linker Show Promising Activity Against Pseudomonas aeruginosa and Staphylococcus aureus
Thomsen, T. T., Mendel, H. C., Al-Mansour, W., Oddo, A., Løbner-Olesen, Anders & Hansen, Paul Robert, 2020, In: Antibiotics. 9, 7, 13 p., 366.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ethanol exposure increases mutation rate through error-prone polymerases
Voordeckers, K., S.Colding-Christensen, Camilla, Grasso, L., Pardo, B., Hoes, L., Kominek, J., Gielens, K., Dekoster, K., Gordon, J., Van der Zande, E., Bircham, P., Swings, T., Michiels, J., Van Loo, P., Nuyts, S., Pasero, P., Lisby, Michael & Verstrepen, K. J., 2020, In: Nature Communications. 11, 16 p., 3664.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative transcriptomic analyses of chlorogenic acid and luteolosides biosynthesis pathways at different flowering stages of diploid and tetraploid Lonicera japonica
Wang, H., Li, Y., Wang, S., Kong, D., Sahu, S. K., Bai, M., Li, H., Li, L., Xu, Y., Liang, H., Liu, Huan & Wu, H., 2020, In: PeerJ. 8, 24 p., e8690.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomes of early-diverging streptophyte algae shed light on plant terrestrialization
Wang, S., Li, L., Li, H., Sahu, S. K., Wang, H., Xu, Y., Xian, W., Song, B., Liang, H., Cheng, S., Chang, Y., Song, Y., Çebi, Z., Wittek, S., Reder, T., Peterson, M., Yang, H., Wang, J., Melkonian, B., Van de Peer, Y. & 5 others, , 2020, In: Nature Plants. 6, 2, p. 95-106Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Prophage-Related Gene VpaChn25_0724 Contributes to Cell Membrane Integrity and Growth of Vibrio parahaemolyticus CHN25
Yang, L., Wang, Y., Yu, P., Ren, S., Zhu, Z., Jin, Y., Yan, J., Peng, Xu & Chen, L., 2020, In: Frontiers in Cellular and Infection Microbiology. 10, 18 p., 595709.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The draft genome of mandrill (Mandrillus sphinx): an Old World monkey
Yin, Y., Yang, T., Liu, Huan, Huang, Z., Zhang, Y., Song, Y., Wang, W., Guang, X., Sahu, S. K. & Kristiansen, Karsten, 2020, In: Scientific Reports. 10, 8 p., 2431.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A Membrane-Associated DHH-DHHA1 Nuclease Degrades Type III CRISPR Second Messenger
Zhao, R., Yang, Y., Zheng, F., Zeng, Z., Feng, W., Jin, X., Wang, J., Yang, K., Liang, Y. X., She, Q. & Han, W., 2020, In: Cell Reports. 32, 11, 16 p., 108133.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative Proteomics and Secretomics Revealed Virulence and Antibiotic Resistance-Associated Factors in Vibrio parahaemolyticus Recovered From Commonly Consumed Aquatic Products
Zhu, Z., Yang, L., Yu, P., Wang, Y., Peng, Xu & Chen, L., 2020, In: Frontiers in Microbiology. 11, 31 p., 1453.Research output: Contribution to journal › Journal article › Research › peer-review
- 2019
- Published
Regulation of BRCA2 by the Protein Phosphatase 2A
Ambjørn, Sara Marie, 2019, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Quantitative sensing and signalling of single-stranded DNA during the DNA damage response
Bantele, S. C. S., Lisby, Michael & Pfander, B., 2019, In: Nature Communications. 10, p. 1-12 944.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The FANCM family Mph1 helicase localizes to the mitochondria and contributes to mtDNA stability
Bernal, M., Yang, X., Lisby, Michael & Mazón, G., 2019, In: DNA Repair. 82, 11 p., 102684.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Sulfolobus and SIRV2: An Enduring Love Story
Bhoobalan, Yuvaraj, 2019, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Inhibition of Type III CRISPR-Cas Immunity by an Archaeal Virus-Encoded Anti-CRISPR Protein
Bhoobalan, Yuvaraj, Johansen, T. B., Di Cianni, N. & Peng, Xu, 2019, In: Cell. 179, 2, p. 448-458, e1-e11Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evolution of the bacterial nucleosidase PpnN and its relation to the stringent response
Bærentsen, R. L., Brodersen, D. E. & ZHANG, YONG, 2019, In: Microbial Cell Factories. 6, 9, p. 450-453Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Development and Psychometric Evaluation of an Item Bank for Computerized Adaptive Testing of the EORTC Insomnia Dimension in Cancer Patients (EORTC CAT-SL)
Dirven, L., Petersen, Morten, Aaronson, N. K., Chie, W., Conroy, T., Costantini, A., Hammerlid, E., Velikova, G., Verdonck-de Leeuw, I. M., Young, T. & Grønvold, Mogens, 6 Dec 2019, In: Applied Research in Quality of Life. 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Current View of the Mechanisms Controlling the Transcription of the TOL Plasmid Aromatic Degradation Pathways
Domínguez-Cuevas, P. & Marqués, S., 2019, Aerobic Utilization of Hydrocarbons, Oils, and Lipids. Rojo, F. (ed.). Springer, p. 573-594 (Handbook of Hydrocarbon and Lipid Microbiology).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Efflux-Pump Upregulation: From Tolerance to High-level Antibiotic Resistance?
Frimodt-Møller, Jakob & Løbner-Olesen, Anders, 2019, In: Trends in Microbiology. 27, 4, p. 291-293Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative genomics for non-O1/O139 Vibrio cholerae isolates recovered from the Yangtze River Estuary versus V. cholerae representative isolates from serogroup O1
Gong, L., Yu, P., Zheng, H., Gu, W., He, W., Tang, Y., Wang, Y., Dong, Y., Peng, Xu, She, Q., Xie, L. & Chen, L., 2019, In: Molecular Genetics and Genomics. 294, 2, p. 417-430Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cmr3 regulates the suppression on cyclic oligoadenylate synthesis by tag complementarity in a Type III-B CRISPR-Cas system
Guo, T., Zheng, F., Zeng, Z., Yang, Y., Li, Q., She, Q. & Han, W., 2019, In: RNA Biology. 16, 10, p. 1513-1520Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Investigation of the Sulfolobus islandicus III-B Cmr-α CRISPR-Cas system and SMV1 anti-CRISPR activity
Guo, T., 2019, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Tolerance of Sulfolobus SMV1 virus to the immunity of I-A and III-B CRISPR-Cas systems in Sulfolobus islandicus
Guo, T., Han, W. & She, Q., 2019, In: RNA Biology. 16, 4, p. 549-556 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative activity of ceftriaxone, ciprofloxacin and gentamicin as a function of bacterial growth rate probed by Escherichia coli chromosome replication in the mouse peritonitis model
Haugan, M. S., Løbner-Olesen, Anders & Frimodt-Møller, N., 2019, In: Antimicrobial Agents and Chemotherapy. 63, 2, 13 p., e-02133-18.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Examination of bacterial growth rate during host infection and its importance for antimicrobial treatment
Haugan, M. S., 2019, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Growth Rate of Escherichia coli During Human Urinary Tract Infection: Implications for Antibiotic Effect
Haugan, M. S., Hertz, F. B., Charbon, Godefroid, Sahin, B., Løbner-Olesen, Anders & Frimodt-Møller, N., 2019, In: Antibiotics. 8, 3, 12 p., 92.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Synthesis of Shld Derivatives, Their Binding to the Destabilizing Domain, and Influence on Protein Accumulation in Transgenic Plants
Jørgensen, F. P., Madsen, D., Meldal, Morten Peter, Olsen, J. V., Petersen, Morten, Granhøj, J. & Bols, Mikael, 2019, In: Journal of Medicinal Chemistry. 62, 10, p. 5191-5216 26 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Esc2 promotes telomere stability in response to DNA replication stress
Jørgensen, S. W., Liberti, S. E., Larsen, N. B., Lisby, Michael, Mankouri, H. W. & Hickson, Ian David, 2019, In: Nucleic Acids Research. 47, 9, p. 4597-4611 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Guidelines for DNA recombination and repair studies: cellular assays of DNA repair pathways
Klein, H. L., Bacinskaja, G., Che, J., Cheblal, A., Elango, R., Epshtein, A., Fitzgerald, D. M., Gómez-González, B., Khan, S. R., Kumar, S., Leland, B. A., Marie, L., Mei, Q., Miné-Hattab, J., Piotrowska, A., Polleys, E. J., Putnam, C. D., Radchenko, E. A., Saada, A. A., Sakofsky, C. J. & 28 others, , 2019, In: Microbial Cell Factories. 6, 1, p. 1-64Research output: Contribution to journal › Review › Research › peer-review
- Published
A Novel Fluorescence-Based Screen for Inhibitors of the Initiation of DNA Replication in Bacteria
Klitgaard, R. N. & Løbner-Olesen, Anders, 2019, In: Current Drug Discovery Technologies. 16, 3, p. 272-277Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Phylogenomics Provides New Insights into Gains and Losses of Selenoproteins among Archaeplastida
Liang, H., Wei, T., Xu, Y., Li, L., Sahu, S. K., Wang, H., Li, H., Fu, X., Zhang, G., Melkonian, M., Liu, X., Wang, S. & Liu, Huan, 2019, In: International Journal of Molecular Sciences (Online). 20, 12, 14 p., 3020.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Schinus terebinthifolia leaf lectin (SteLL) has anti-infective action and modulates the response of Staphylococcus aureus-infected macrophages
Lima, I. M. D. S. F., Zagmignan, A., Santos, D. M., Maia, H. S., Silva, L. D. S., Cutrim, B. D. S., Vieira, S. L., Filho, C. M. B., de Sousa, E. M., Napoleão, T. H., Krogfelt, K. A., Løbner-Olesen, Anders, Paiva, P. M. G. & da Silva, L. C. N., 2019, In: Scientific Reports. 9, 14 p., 18159.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A novel type III CRISPR-Cas system in Lactobacilli: Molecular mechanisms and its application potential
Lin, Jinzhong, 2019, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Structure-Activity Study of an All-D Antimicrobial Octapeptide D2D
Lone, A., Thomsen, T. T., Nielsen, J. E., Thulstrup, Peter Waaben, Klitgaard, R. N., Løbner-Olesen, Anders, Lund, R., Jenssen, H. & Hansen, Paul Robert, 2019, In: Molecules. 24, 24, 17 p., 4571.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Regulation of Ribonucleotide Reductase and Screening for Species-Specific Inhibitors in Fission Yeast
Løvschal, K. V., 2019, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Predicted highly derived class 1 CRISPR-Cas system in Haloarchaea containing diverged Cas5 and Cas7 homologs but no CRISPR array
Makarova, K. S., Karamycheva, S., Shah, S. A., Vestergaard, G. A., Garrett, Roger Antony & Koonin, E. V., 2019, In: FEMS Microbiology Letters. 366, 7, 5 p., fnz079.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The E. coli HicB Antitoxin Contains a Structurally Stable Helix-Turn-Helix DNA Binding Domain
Manav, M. C., Turnbull, K. J., Jurėnas, D., Garcia-Pino, A., Gerdes, K. & Brodersen, D. E., 2019, In: Structure. 27, 11, p. 1675-1685, e1-e3Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Structure of Csx1-cOA4 complex reveals the basis of RNA decay in Type III-B CRISPR-Cas
Molina, R., Stella, S., Feng, M., Sofos, N., Jauniskis, V., Pozdnyakova, I., López-Méndez, B., She, Q. & Montoya, Guillermo, 2019, In: Nature Communications. 10, 14 p., 4302.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Serine-Threonine Kinases Encoded by Split hipA Homologs Inhibit Tryptophanyl-tRNA Synthetase
Nielsen, S. V., Turnbull, K. J., Roghanian, Mohammad, Bærentsen, R., Semanjski, M., Brodersen, D. E., Macek, B. & Gerdes, K., 2019, In: mBio. 10, 3, 16 p., e-01138-19.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A seed motif for target RNA capture enables efficient immune defence by a type III-B CRISPR-Cas system
Pan, S., Li, Q., Deng, Ling, Jiang, S., Jin, X., Peng, N., Liang, Y., She, Q. & Li, Y., 2019, In: RNA Biology. 16, 9, p. 1166-1178Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Stable maintenance of the rudivirus SIRV3 in a carrier state in Sulfolobus islandicus despite activation of the CRISPR-Cas immune response by a second virus SMV1
Papathanasiou, P., Erdmann, S., Leon-Sobrino, C., Sharma, K., Urlaub, H., Garrett, Roger Antony & Peng, Xu, 2019, In: RNA Biology. 16, 4, p. 557-565Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The PCNA interaction motifs revisited: thinking outside the PIP-box
Prestel, Andreas, Wichmann, N., Martins, J. M., Marabini, R., Kassem, N., Broendum, S. S., Otterlei, M., Nielsen, Olaf, Willemoës, Martin, Ploug, Michael, Boomsma, Wouter & Kragelund, Birthe Brandt, 2019, In: Cellular and Molecular Life Sciences. 76, 24, p. 4923-4943Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Toxin-antitoxin operon kacAT of Klebsiella pneumoniae is regulated by conditional cooperativity via a W-shaped KacA-KacT complex
Qian, H., Yu, H., Li, P., Zhu, E., Yao, Q., Tai, C., Deng, Z., Gerdes, K., He, X., Gan, J. & Ou, H., 2019, In: Nucleic Acids Research. 47, 14, p. 7690-7702Research output: Contribution to journal › Journal article › Research › peer-review
- Published
(p)ppGpp-mediated stress response induced by defects in outer membrane biogenesis and ATP production promotes survival in Escherichia coli
Roghanian, Mohammad, Semsey, S., Løbner-Olesen, Anders & Jalalvand, F., 2019, In: Scientific Reports. 9, p. 1-11 2934.Research output: Contribution to journal › Journal article › Research › peer-review
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Receptor-like kinase complexes in plant innate immunity
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MAP kinase cascades in Arabidopsis innate immunity
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relax: the analysis of biomolecular kinetics and thermodynamics using NMR relaxation dispersion data
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PICH deficiency limits the progression of MYC-induced B-cell lymphoma
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Regulatory sequence-based discovery of anti-defense genes in archaeal viruses
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Bacterial chromosomes and their replication
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