Functional Genomics

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  1. Published

    "Population structure of drug-susceptible, -resistant and ESBL-producing Escherichia coli from community-acquired urinary tract infections"

    Hertz, F. B., Nielsen, J. B., Schønning, Kristian, Littauer, P., Knudsen, J. D., Løbner-Olesen, Anders & Frimodt-Møller, N., 11 Apr 2016, In: BMC Microbiology. 16, 6 p., 63.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    (p)ppGpp Regulates a Bacterial Nucleosidase by an Allosteric Two-Domain Switch

    ZHANG, YONG, Bærentsen, R. L., Fuhrer, T., Sauer, U., Gerdes, K. & Brodersen, D. E., 2019, In: Molecular Cell. 74, 6, p. 1239-1249, e1-e4

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    (p)ppGpp-Dependent Regulation of the Nucleotide Hydrolase PpnN Confers Complement Resistance in Salmonella enterica Serovar Typhimurium

    Chau, N. Y. E., Pérez-Morales, D., Elhenawy, W., Bustamante, V. H., ZHANG, YONG & Coombes, B. K., 2021, In: Infection and Immunity. 89, 2, 14 p., e00639-20.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    (p)ppGpp-mediated stress response induced by defects in outer membrane biogenesis and ATP production promotes survival in Escherichia coli

    Roghanian, Mohammad, Semsey, S., Løbner-Olesen, Anders & Jalalvand, F., 2019, In: Scientific Reports. 9, p. 1-11 2934.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    3Rs tightly intertwined to maintain genome stability

    Lisby, Michael & Mortensen, U. H., Jan 2017, In: FEMS Yeast Research. 17, 1, 2 p., fox003.

    Research output: Contribution to journal › Editorial › Research

  6. Published

    57miRNA regulation during oncogene-induced senescence


    Christoffersen, N. R., Frankel, Lisa, Klausen, M., Jacobsen, A., Krogh, Anders & Lund, Anders H., May 2008.

    Research output: Contribution to conference › Conference abstract for conference › Research

  7. Published

    7. Proprioceptive evoked potentials (PEP) in man: Cerebral responses of changing weight loads on the hand

    Arnfred, Sidse Marie , CHEN, Ao, Eder, D. N., Glenthøj, Birte Yding & Hemmingsen, Ralf Peter, Oct 2001, In: Brain and Cognition. 47, 1-2, p. 54-57 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Arabidopsis VARIEGATED 3 encodes a chloroplast-targeted, zinc-finger protein required for chloroplast and palisade cell development

    Næsted, H., Holm, A., Jenkins, T., Nielsen, H. B., Harris, C. A., Beale, M. H., Andersen, M., Mant, A., Scheller, H. V., Camara, B., Mattsson, O. & Mundy, J., 2004, In: Journal of Cell Science. 117, 20, p. 4807-18 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Arabidopsis MAP Kinase 4 Negatively Regulates Systemic Acquired Resistance

    Petersen, Morten, Brodersen, P., Naested, H., Andreasson, E., Lindhart, U., Johansen, B., Nielsen, H. B., Lacy, M., Austin, M. J., Parker, J. E., Sharma, S. B., Klessig, D. F., Martienssen, R., Mattsson, O., Jensen, A. B. & Mundy, J. W., 2000, In: Gekkan Saibo. 103, 7, p. 1111-1120

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Arabidopsis MAP kinase 4 regulates gene expression through transcription factor release in the nucleus

    Qiu, J., Fiil, Berthe Katrine, Petersen, K., Nielsen, H. B., Botanga, C. J., Thorgrimsen, S. P., Palma, K., Suarez Rodriguez, M. C., Sandbech-Clausen, S., Lichota, J., Brodersen, P., Grasser, K. D., Mattsson, O., Glazebrook, J., Mundy, J. & Petersen, Morten, 2008, In: EMBO Journal. 27, 16, p. 2214-2221 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    C-locked analogs of the antimicrobial peptide BP214

    Andersen, I. K. L., Thomsen, T. T., Rashid, J., Bobak, T. R., Oddo, A., Franzyk, Henrik, Løbner-Olesen, Anders & Hansen, Paul Robert, 2022, In: Antibiotics. 11, 8, 10 p., 1080.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Chloranthus genome provides insights into the early diversification of angiosperms

    Guo, X., Fang, D., Sahu, S. K., Yang, S., Guang, X., Folk, R., Smith, S. A., Chanderbali, A. S., Chen, S., Liu, M., Yang, T., Zhang, S., Liu, X., Xu, X., Soltis, P. S., Soltis, D. E. & Liu, Huan, 2021, In: Nature Communications. 12, 14 p., 6930.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Escherichia coli belonging to ST131 rarely transfers blactx-m-15 to fecal Escherichia coli

    Thingholm, K. R., Hertz, F. B., Løbner-Olesen, Anders, Frimodt-Møller, N. & Nielsen, K. L., 2019, In: Infection and Drug Resistance. 12, p. 2429-2435

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    In silico evolution of lysis-lysogeny strategies reproduces observed lysogeny propensities in temperate bacteriophages

    Sinha, V., Goyal, A., Svenningsen, Sine Lo, Semsey, S. & Krishna, S., 26 Jul 2017, In: Frontiers in Microbiology. 8, 11 p., 1386.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    In vivo and in vitro protein imaging in thermophilic archaea by exploiting a novel protein tag

    Visone, V., Han, W., Perugino, G., del Monaco, G., She, Q., Rossi, M., Valenti, A. & Ciaramella, M., 3 Oct 2017, In: PLoS ONE. 12, 10, 19 p., e0185791.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Salmonella Typhimurium undergoes distinct genetic adaption during chronic infections of mice

    Søndberg, E. & Jelsbak, L., 2016, In: BMC Microbiology. 16, 11 p., 30.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Schinus terebinthifolia leaf lectin (SteLL) has anti-infective action and modulates the response of Staphylococcus aureus-infected macrophages

    Lima, I. M. D. S. F., Zagmignan, A., Santos, D. M., Maia, H. S., Silva, L. D. S., Cutrim, B. D. S., Vieira, S. L., Filho, C. M. B., de Sousa, E. M., Napoleão, T. H., Krogfelt, K. A., Løbner-Olesen, Anders, Paiva, P. M. G. & da Silva, L. C. N., 2019, In: Scientific Reports. 9, 14 p., 18159.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Age- and tactic-related paternity success in male African elephants

    Rasmussen, H. B., Okello, J. B. A., Wittemyer, G., Siegismund, Hans Redlef, Arctander, P., Vollrath, F. & Douglas-Hamilton, I., 2008, In: Behavioral Ecology. 19, 1, p. 9-15

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    A CRISPR-associated factor Csa3a regulates DNA damage repair in Crenarchaeon Sulfolobus islandicus

    Liu, Z., Sun, M., Liu, J., Liu, T., Ye, Q., Li, Y. & Peng, N., 2020, In: Nucleic Acids Research. 48, 17, p. 9681-9693 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    A Comparative Analysis of Weizmannia coagulans Genomes Unravels the Genetic Potential for Biotechnological Applications

    Aulitto, M., Martinez Alvarez, Laura, Fiorentino, G., Limauro, D., Peng, Xu & Contursi, P., 2022, In: International Journal of Molecular Sciences . 23, 6, 23 p., 3135.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    A Critical Role for Dna2 at Unwound Telomeres

    Markiewicz-Potoczny, M., Lisby, Michael & Lydall, D., 2018, In: Genetics. 209, 1, p. 129-141 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    A Flp-nick system to study repair of a single protein-bound nick in vivo

    Nielsen, I., Bentsen, I. B., Lisby, Michael, Hansen, S., Mundbjerg, K., Andersen, A. H. & Bjergbaek, L., 2009, In: Nature Methods. 6, 10, p. 753-757 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    A High Resolution, High Throughput Approach for Subcellular Spatial Omics

    CHEN, Ao, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 130 p.

    Research output: Book/Report › Ph.D. thesis › Research

  24. Published

    A Membrane-Associated DHH-DHHA1 Nuclease Degrades Type III CRISPR Second Messenger

    Zhao, R., Yang, Y., Zheng, F., Zeng, Z., Feng, W., Jin, X., Wang, J., Yang, K., Liang, Y. X., She, Q. & Han, W., 2020, In: Cell Reports. 32, 11, 16 p., 108133.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    A Novel Fluorescence-Based Screen for Inhibitors of the Initiation of DNA Replication in Bacteria

    Klitgaard, R. N. & Løbner-Olesen, Anders, 2019, In: Current Drug Discovery Technologies. 16, 3, p. 272-277

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    A Robust Proton Flux (pHlux) Assay for Studying the Function and Inhibition of the Influenza A M2 Proton Channel

    Santner, P., Martins, J. M. D. S., Laursen, J. S., Behrendt, L., Riber, Leise, Olsen, Christian Adam, Arkin, I. T., Winther, Jakob R., Willemoës, Martin & Lindorff-Larsen, Kresten, 2018, In: Biochemistry. 57, 41, p. 5949-5956

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    A Type III-B Cmr effector complex catalyzes the synthesis of cyclic oligoadenylate second messengers by cooperative substrate binding

    Han, W., Stella, S., Zhang, Y., Guo, T., Sulek, K., Peng-Lundgren, L., Montoya, Guillermo & She, Q., 2018, In: Nucleic Acids Research. 46, 19, p. 10319-10330 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    A Unified Nomenclature for Protein Subunits of Mediator Complexes Linking Transcriptional Regulators to RNA Polymerase II

    Bourbon, H. M., Aguilera, A., Ansari, A. Z., Asturias, F. J., Berk, A. J., Bjorklund, S., Blackwell, T. K., Borggrefe, T., Carey, M., Carlson, M., Conaway, J. W., Conaway, R. C., Emmons, S. W., Fondell, J. D., Freedman, L. P., Fukasawa, T., Gustafsson, C. M., Han, M., He, X., Herman, P. K. & 27 others, Hinnebusch, A. G., Holmberg, Steen, Holstege, F. C., Jaehning, J. A., Kim, Y., Kuras, L., Leutz, A., Lis, J. T., Meisterernest, M., Naar, A. M., Nasmyth, K., Parvin, J. D., Ptashne, M., Reinberg, D., Ronne, H., Sadowski, I., Sakurai, H., Sipiczki, M., Sternberg, P. W., Stillman, D. J., Strich, R., Struhl, K., Svejstrup, J. Q., Tuck, S., Winston, F., Roeder, R. G. & Kornberg, R. D., 2004, In: Molecular Cell. 14, 5, p. 553-557

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    A Unified Resource for Tracking Anti-CRISPR Names

    Bondy-Denomy, J., Davidson, A. R., Doudna, J. A., Fineran, P. C., Maxwell, K. L., Moineau, S., Peng, Xu, Sontheimer, E. J. & Wiedenheft, B., 2018, In: CRISPR Journal. 1, 5, p. 304-305

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  30. Published

    A backward view from 16S rRNA to archaea to the universal tree of life to progenotes Reminiscences of Carl Woese

    Garrett, Roger Antony, 2014, In: R N A Biology. 11, 3, p. 232-235 4 p.

    Research output: Contribution to journal › Review › Research › peer-review

  31. Published

    A bacterial ras-like small GTP-binding protein and its cognate GAP establish a dynamic spatial polarity axis to control directed motility

    ZHANG, YONG, Franco, M., Ducret, A. & Mignot, T., Jul 2010, In: PLOS Biology. 8, 7

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    A chromosome-level genome assembly of rugged rose (Rosa rugosa) provides insights into its evolution, ecology, and floral characteristics

    Chen, F., Su, L., Hu, S., Xue, J., Liu, H., Liu, G., Jiang, Y., Du, J., Qiao, Y., Fan, Y., Liu, Huan, Yang, Q., Lu, W., Shao, Z., Zhang, J., Zhang, L., Chen, F. & Cheng, Z. (., 2021, In: Horticulture Research. 8, 13 p., 141.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    A clade of RHH proteins ubiquitous in Sulfolobales and their viruses regulates cell cycle progression

    Li, X., Lozano-Madueno, C., Martinez Alvarez, Laura & Peng, Xu, 2023, In: Nucleic acids symposium series. 51, 4, 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    A comparative method for finding and folding RNA secondary structures within protein-coding regions.

    Pedersen, J. S., Meyer, I. M., Forsberg, R., Simmonds, P. & Hein, J., 2004, In: Nucleic Acids Research. 32, 16, p. 4925-36 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    A complex of BRCA2 and PP2A-B56 is required for DNA repair by homologous recombination

    Ambjørn, Sara Marie, Duxin, Julien, Hertz, Emil Peter Thrane, Nasa, I., Duro, Joana Maria, Kruse, Thomas, Lopez-Mendez, B., Rymarczyk, B., Cressey, L. E., van Overeem Hansen, T., Kettenbach, A. N., Østergaard, Vibe Hallundbæk, Lisby, Michael & Nilsson, Jakob, 2021, In: Nature Communications. 12, 1, 11 p., 5748.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    A conformational switch in the DiGIR1 ribozyme involved in release and folding of the downstream I-DirI mRNA

    Nielsen, Henrik, Einvik, C., Lentz, T. E., Hedegaard, M. M. & Johansen, S. D., 2009, In: RNA: A publication of the RNA Society. 15, 5, p. 958-67 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    A context-dependent and disordered ubiquitin-binding motif

    Dreier, Jesper Elmsted, Prestel, Andreas, Martins, J. M., Brøndum, S. S., Nielsen, Olaf, Garbers, Anna Engstrøm, Suga, H., Boomsma, Wouter, Rogers, Joseph Matthew, Hartmann-Petersen, Rasmus & Kragelund, Birthe Brandt, 2022, In: Cellular and molecular life sciences : CMLS. 79, 9, 21 p., 484.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    A converging subset of soil bacterial taxa is permissive to the IncP-1 plasmid pKJK5 across a range of soil copper contamination

    Song, J., Klümper, U., Riber, Leise, Dechesne, A., Smets, B. F., Sørensen, Søren Johannes & Brandt, Kristian Koefoed, 2020, In: FEMS Microbiology Ecology. 96, 11, 10 p., fiaa200.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    A dimeric Rep protein initiates replication of a linear archaeal virus genome: implications for the Rep mechanism and viral replication

    Oke, M., Kerou, M., Liu, H., Peng, Xu, Garrett, Roger Antony, Prangishvili, D., Naismith, J. H. & White, M. F., 2011, In: Journal of Virology. 85, 2, p. 925-31 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    A distinct role for recombination repair factors in an early cellular response to transcription-replication conflicts

    Shao, Xin, Joergensen, A. M., Howlett, N. G., Lisby, Michael & Østergaard, Vibe Hallundbæk, 2020, In: Nucleic Acids Research. 48, 10, p. 5467-5484 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    A draft genome of the medicinal plant Cremastra appendiculata (D. Don) provides insights into the colchicine biosynthetic pathway

    Wang, J., Xie, J., Chen, H., Qiu, X., Cui, H., Liu, Y., Sahu, S. K., Fang, D., Li, T., Wang, M., Chen, Y., Liu, Huan, Zhang, J. & Wang, B., 2022, In: Communications Biology . 5, 12 p., 1294.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    A guanosine quadruplex and two stable hairpins flank a major cleavage site in insulin-like growth factor II mRNA

    Christiansen, Jan, Kofod, M. & Nielsen, F. C., 1994, In: Nucleic Acids Research. 22, 25, p. 5709-16 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    A human topoisomerase IIα heterodimer with only one ATP binding site can go through successive catalytic cycles

    Skouboe, C., Bjergbaek, L., Østergaard, Vibe Hallundbæk, Larsen, M. K., Knudsen, B. R. & Andersen, A. H., 21 Feb 2003, In: Journal of Biological Chemistry. 278, 8, p. 5768-5774 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    A long-standing Pleistocene refugium in southern Africa and a mosaic of refugia in East Africa: insights from mtDNA and the common eland antelope

    Lorenzen, Eline, Masembe, C., Arctander, P. & Siegismund, Hans Redlef, 2010, In: Journal of Biogeography. 37, 3, p. 571-581 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    A novel Sulfolobus non-conjugative extrachromosomal genetic element capable of integration into the host genome and spreading in the presence of a fusellovirus

    Wang, Y., Duan, Z., Zhu, H., Guo, X., Wang, Z., Zhou, J., She, Q. & Huang, L., 2007, In: Virology. 363, 1, p. 124-33 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    A novel carboxyl-terminal protease derived from Paenibacillus lautus CHN26 exhibiting high activities at multiple sites of substrates

    Li, Y., Pan, Y., She, Q. & Chen, L., 2013, In: B M C Biotechnology. 13, 13 p., 89.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    A novel esterase from Saccharomyces carlsbergensis, a possible function for the yeast TIP1 gene

    Horsted, M. W., Dey, E. S., Holmberg, Steen & Kielland-Brandt, M. C., 1998, In: Yeast. 14, 9, p. 793-803 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    A novel interference mechanism by a type IIIB CRISPR-Cmr module in Sulfolobus

    Deng, Ling, Garrett, Roger Antony, Shah, S. A., Peng, Xu & She, Q., 2013, In: Molecular Microbiology. 87, 5, p. 1088-1099 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    A novel rudivirus, ARV1, of the hyperthermophilic archaeal genus Acidianus

    Vestergaard, G. A., Häring, M., Peng, Xu, Rachel, R., Garrett, Roger Antony & Prangishvili, D., 2005, In: Virology. 336, 1, p. 83-92 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    A novel single-tailed fusiform Sulfolobus virus STSV2 infecting model Sulfolobus species

    Erdmann, S., Chen, B., Huang, X., Deng, Ling, Liu, C., Shah, S. A., Bauer, S. L. M., León Sobrino, C., Wang, H., Wei, Y., She, Q., Garrett, Roger Antony, Huang, L. & Lin, L., 2014, In: Extremophiles. 18, 1, p. 51-60 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    A novel type III CRISPR-Cas system in Lactobacilli: Molecular mechanisms and its application potential

    Lin, Jinzhong, 2019, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  52. Published

    A novel type of silencing factor, Clr2, is necessary for transcriptional silencing at various chromosomal locations in the fission yeast Schizosaccharomyces pombe

    Bjerling, P., Ekwall, K., Egel, Richard & Thon, Genevieve, 2004, In: Nucleic Acids Research. 32, 15, p. 4421-8 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    A promoter within the E6 ORF of human papillomavirus type 16 contributes to the expression of the E7 oncoprotein from a monocistronic mRNA

    Glahder, J. H., Hansen, C. N., Vinther, Jeppe, Madsen, B. S. & Norrild, B., 2003, In: Journal of General Virology. 84, Pt 12, p. 3429-41 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    A putative ABC transporter is involved in negative regulation of biofilm formation by Listeria monocytogenes.

    Zhu, X., Long, F., Chen, Y., Knoechel, Susanne, She, Q. & Shi, X., 2008, In: Applied and Environmental Microbiology. 74, 24, p. 7675-7683

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    A putative flavin-containing mono-oxygenase as a marker for certain defense and cell death pathways

    Olszak, B., Malinovsky, F. G., Brodersen, P., Grell, M., Giese, H., Petersen, Morten & Mundy, J., 2006, In: Plant Science. 170, 3, p. 614-623

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    A putative viral defence mechanism in archaeal cells

    Lillestøl, R. K., Redder, P., Garrett, Roger Antony & Brügger, K., 2006, In: Archaea. 2, 1, p. 59-72 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    A seed motif for target RNA capture enables efficient immune defence by a type III-B CRISPR-Cas system

    Pan, S., Li, Q., Deng, Ling, Jiang, S., Jin, X., Peng, N., Liang, Y., She, Q. & Li, Y., 2019, In: RNA Biology. 16, 9, p. 1166-1178

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    A site-specific endonuclease encoded by a typical archaeal intron.

    Dalgaard, J., Garrett, Roger Antony & Belfort, M., 1993, In: Proceedings of the National Academy of Science of the United States of America. 90, 12, p. 5414-5417

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    A sparsomycin-resistant mutant of Halobacterium salinarium lacks a modification at nucleotide U2603 in the peptidyl transferase centre of 23 S rRNA

    Lázaro, E., Rodriguez-Fonseca, C., Porse, Bo Torben, Ureña, D., Garrett, Roger Antony & Ballesta, J. P. G., 16 Aug 1996, In: Journal of Molecular Biology. 261, 2, p. 231-238 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    A synthetic arabinose-inducible promoter confers high levels of recombinant protein expression in hyperthermophilic archaeon Sulfolobus islandicus

    Peng, N., Deng, Ling, Mei, Y., Jiang, D., Hu, Y., Awayez, M., Liang, Y. & She, Q., 2012, In: Applied and Environmental Microbiology. 78, 16, p. 5630-5637 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    A transcriptional factor B paralog functions as an activator to DNA damage-responsive expression in archaea

    Feng, X., Sun, M., Han, W., Liang, Y. X. & She, Q., 2018, In: Nucleic Acids Research. 46, 14, p. 7085-7096

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    A two-step model for senescence triggered by a single critically short telomere

    Abdallah, P., Luciano, P., Runge, K. W., Lisby, Michael, Géli, V., Gilson, E. & Teixeira, M. T., 2009, In: Nature Cell Biology. 11, 8, p. 988-93 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  63. Published

    A type III-A CRISPR-Cas system mediates co-transcriptional DNA cleavage at the transcriptional bubbles in close proximity to active effectors

    Lin, Jinzhong, Shen, Y., Ni, J. & She, Q., 2021, In: Nucleic Acids Research. 49, 13, p. 7628-7643 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    A type III-B CRISPR-Cas effector complex mediating massive target DNA destruction

    Han, W., Li, Y., Deng, Ling, Feng, M., Peng, W., Hallstrøm, S., Zhang, J., Peng, N., Liang, Y. X., White, M. F. & She, Q., 2017, In: Nucleic Acids Research. 45, 4, p. 1983–1993 11 p., gkw1274.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    AAA ATPase p529 of Acidianus two-tailed virus ATV and host receptor recognition

    Erdmann, S., Scheele, U. & Garrett, Roger Antony, 2011, In: Virology. 421, 1, p. 61-66 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    ACD 11: Programmed Cell Death, Sphingolipids and Plant Defense

    Petersen, N. H. T., 2008, Department of Biology: Museum Tusculanum. 143 p.

    Research output: Book/Report › Ph.D. thesis › Research

  67. Published

    AFV1, a novel virus infecting hyperthermophilic archaea of the genus Acidianus.

    Bettstetter, M., Peng, Xu & Garrett RA, Prangishvili D., G. R. P. D., 2003, In: Virology.

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    ALG-2 participates in recovery of cells after plasma membrane damage by electroporation and digitonin treatment

    la Cour, J. M., Gojkovic, P. W., Ambjorner, S. E. B., Bagge, J., Jensen, S. M., Panina, S. & Berchtold, Martin Werner, 2018, In: PLOS ONE. 13, 9, p. 1-13 e0204520.

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. Published

    ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana

    Jensen, M. K., Lindemose, Søren, Masi, F. D., Reimer, J. J., Nielsen, M., Perera, V., Workman, C. T., Turck, F., Grant, M. R., Mundy, J., Petersen, Morten & Skriver, Karen, 2013, In: FEBS Open Bio. 3, p. 321-327 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    Abc1: a new ABC transporter from the fission yeast Schizosaccharomyces pombe

    Christensen, P. U., Davis, K., Nielsen, O., Davey, W. J. & Nielsen, Olaf, 1 Feb 1997, In: F E M S Microbiology Letters. 147, 1, p. 97-102 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    Actin homolog MreB and RNA polymerase interact and are both required for chromosome segregation in Escherichia coli

    Kruse, Thomas, Blagoev, B., Løbner-Olesen, Anders, Wachi, M., Sasaki, K., Iwai, N., Mann, Matthias & Gerdes, K., 1 Jan 2006, In: Genes & Development. 20, 1, p. 113-124 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    Activating the Cpx response induces tolerance to antisense PNA delivered by an arginine-rich peptide in Escherichia coli

    Frimodt-Møller, Jakob, Koulouktsis, A., Charbon, Godefroid, Otterlei, M., Nielsen, Peter E. & Løbner-Olesen, Anders, 2021, In: Molecular Therapy - Nucleic Acids. 25, p. 444-454 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Activation of the Stringent Response by Loading of RelA-tRNA Complexes at the Ribosomal A-Site

    Winther, K. S., Roghanian, Mohammad & Gerdes, K., 2018, In: Molecular Cell. 70, 1, p. 95-105, e1-e4 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    Adaptation to diverse nitrogen-limited environments by deletion or extrachromosomal element formation of the GAP1 locus

    Gresham, D., Usaite, R., Germann, S. M., Lisby, Michael, Botstein, D. & Regenberg, Birgitte, 2010, In: Proceedings of the National Academy of Science of the United States of America. 107, 43, p. 18551-6 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    Adenosine triphosphatases of thermophilic archaeal double-stranded DNA viruses

    Happonen, L. J., Erdmann, S., Garrett, Roger Antony & Butcher, S. J., 2014, In: Cell & Bioscience. 4, 37, p. 37-52 16 p.

    Research output: Contribution to journal › Review › Research › peer-review

  76. Published

    Adenylylation of gyrase and topo IV by FicT toxins disrupts bacterial DNA topology

    Harms, A., Stanger, F. V., Scheu, P. D., de Jong, I. G., Goepfert, A., Glatter, T., Gerdes, K., Schirmer, T. & Dehio, C., 2015, In: Cell Reports. 12, 9, p. 1497-1507 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Adipokinetic hormones and their G protein-coupled receptors emerged in Lophotrochozoa

    Li, S., Hauser, Frank, Skadborg, S. K., Nielsen, S. V., Kirketerp-Møller, N. & Grimmelikhuijzen, Cornelis (Cok), 2016, In: Scientific Reports. 6, 13 p., 32789.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    Alarmone (p)ppGpp regulates the transition from pathogenicity to mutualism in Photorhabdus luminescens

    Skjerning, R. B., Roghanian, Mohammad, Gerdes, K. & Clarke, D. J., 2016, In: Molecular Microbiology. 100, 4, p. 735-747 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    Alcoholysis and strand joining by the Flp site-specific recombinase: Mechanistically equivalent reactions mediated by distinct catalytic configurations

    Knudsen, B. R., Lee, J., Lisby, Michael, Westergaard, O. & Jayaram, M., 21 Aug 1998, In: Journal of Biological Chemistry. 273, 34, p. 22028-22036 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    Algae Genome Studies Reveal the Evolutionary History of Green Plants

    Wang, S., 2021, Department of Biology, Faculty of Science, University of Copenhagen. 134 p.

    Research output: Book/Report › Ph.D. thesis › Research

  81. Published

    Algorithms for Protein Structure Prediction

    Paluszewski, M., 2008, København: Department of Computer Science, University of Copenhagen. 196 p.

    Research output: Book/Report › Ph.D. thesis › Research

  82. Published

    Allosteric regulation of Csx1, a type IIIB-associated CARF domain ribonuclease by RNAs carrying a tetraadenylate tail

    Han, W., Pan, S., López-Méndez, B., Montoya, Guillermo & She, Q., 13 Oct 2017, In: Nucleic Acids Research. 45, 18, p. 10740-10750 11 p., gkx726.

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    An Arabidopsis callose synthase.

    Ostergaard, L., Petersen, Morten, Mattsson, O. & Mundy, J., 2002, In: Plant Molecular Biology. 49, 6, p. 559-566 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    An IPTG-inducible derivative of the fission yeast nmt promoter

    Kjærulff, S. & Nielsen, Olaf, 2015, In: Yeast. 32, p. 469-478 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    An Orc1/Cdc6 ortholog functions as a key regulator in the DNA damage response in Archaea

    Sun, M., Feng, X., Liu, Z., Han, W., Liang, Y. X. & She, Q., 2018, In: Nucleic Acids Research. 46, 13, p. 6697-6711

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    An RNA gene expressed during cortical development evolved rapidly in humans.

    Pollard, K. S., Salama, S. R., Lambert, N., Lambot, M., Coppens, S., Pedersen, J. S., Katzman, S., King, B., Onodera, C., Siepel, A., Kern, A. D., Dehay, C., Igel, H., Ares, M., Vanderhaeghen, P. & Haussler, D., 2006, In: Nature. 443, 7108, p. 167-72 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    An amphipathic undecapeptide with all D-amino acids shows promising activity against colistin-resistant strains of Acinetobacter baumannii and a dual mode of action

    Oddo, A., Thomsen, T. T., Kjelstrup, S., Gorey, C., Franzyk, Henrik, Frimodt-Møller, N., Løbner-Olesen, Anders & Hansen, Paul Robert, 2016, In: Antimicrobial Agents and Chemotherapy. 60, 1, p. 592-599 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    An archaeal CRISPR type III-B system exhibiting distinctive RNA targeting features and mediating dual RNA and DNA interference

    Peng, W., Feng, M., Feng, X., Liang, Y. X. & She, Q., 2015, In: Nucleic Acids Research. 43, 1, p. 406-417 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    An archaeal protein evolutionarily conserved in prokaryotes is a zinc-dependent metalloprotease

    Hu, Y., Peng, N., Han, W., Mei, Y., Chen, Z., Feng, X., Liang, Y. X. & She, Q., 2012, In: Bioscience Reports. 32, p. 609-618 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    An efficient pipeline for ancient DNA mapping and recovery of endogenous ancient DNA from whole-genome sequencing data

    Xu, W., Lin, Y., Zhao, K., Li, H., Tian, Y., Ngatia, J. N., Ma, Y., Sahu, S. K., Guo, H., Guo, X., Xu, Y. C., Liu, Huan, Kristiansen, Karsten, Lan, T. & Zhou, X., 2021, In: Ecology and Evolution. 11, 1, p. 390-401 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    An evolutionary model for protein-coding regions with conserved RNA structure.

    Pedersen, J. S., Forsberg, R., Meyer, I. M. & Hein, J., 2004, In: Molecular Biology and Evolution. 21, 10, p. 1913-22 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    An exceptional case of historical outbreeding in African sable antelope populations

    Pitra, C., Hansen, Anders Johannes, Lieckfeldt, D. & Arctander, P., 2002, In: Molecular Ecology. 11, 7, p. 1197-208

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    An improved PCR method for endogenous DNA retrieval in contaminated Neandertal samples based on the usage of blocking primers

    Gigli, E., Rasmussen, M., Civit, S., Rosas, A., de la Rasilla, M., Fortea, J., Gilbert, M Thomas P, Willerslev, Eske & Lalueza-Fox, C., 2009, In: Journal of Archaeological Science. 36, p. 2676-2679

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    An improved direct metamobilome approach increases the detection of larger-sized circular elements across kingdoms

    Alanin, K. W. S., Jørgensen, T. S., Browne, Patrick Denis, Petersen, Bent, Riber, Leise, Kot, Witold & Hansen, Lars Hestbjerg, 2021, In: Plasmid. 115, 11 p., 102576.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    An innate immunity pathway in the moss Physcomitrella patens

    Bressendorff, Simon, Azevedo da Silva, R., Kenchappa, C. S., Ponce de León, I., Olsen, J. V., Rasmussen, M. W., Erbs, G., Newman, Mari-Anne, Petersen, Morten & Mundy, J., 2016, In: The Plant Cell. 28, 6, p. 1328-1342 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    An intriguing relationship between the cyclic diguanylate signaling system and horizontal gene transfer

    Madsen, Jonas Stenløkke, Hylling, Ole, Jacquiod, S. J. A., Pécastaings, S., Hansen, L. H., Riber, Leise, Vestergaard, G. A. & Sørensen, Søren Johannes, 2018, In: ISME Journal. 12, 9, p. 2330-2334 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    An updated evolutionary classification of CRISPR-Cas systems

    Makarova, K. S., Wolf, Y. I., Alkhnbashi, O. S., Costa, F., Shah, S. A., Saunders, S. J., Barrangou, R., Brouns, S. J. J., Charpentier, E., Haft, D. H., Horvath, P., Moineau, S., Mojica, F. J. M., Terns, R. M., Terns, M. P., White, M. F., Yakunin, A. F., Garrett, R. A., van der Oost, J., Backofen, R. & 1 others, Koonin, E. V., 2015, In: Nature Reviews. Microbiology. 13, 11, p. 722-736 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    An upstream activation element exerting differential transcriptional activation on an archaeal promoter

    Peng, N., Xia, Q., Chen, Z., Liang, Y. X. & She, Q., 2009, In: Molecular Microbiology. 74, 4, p. 928-939

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Analogues of a Cyclic Antimicrobial Peptide with a Flexible Linker Show Promising Activity Against Pseudomonas aeruginosa and Staphylococcus aureus

    Thomsen, T. T., Mendel, H. C., Al-Mansour, W., Oddo, A., Løbner-Olesen, Anders & Hansen, Paul Robert, 2020, In: Antibiotics. 9, 7, 13 p., 366.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    Analysis of Escherichia coli mutants with altered DNA content

    Trun, N. J., Gottesman, S. & Løbner-Olesen, Anders, 1991, In: Cold Spring Harbor Symposia on Quantitative Biology. 56, p. 353-8 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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