Mathias Middelboe

Mathias Middelboe

Professor

ORCID: 0000-0002-9587-9171

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  1. Published

    Sharp contrasts between freshwater and marine microbial enzymatic capabilities, community composition, and DOM pools in a NE Greenland fjord

    Balmonte, J. P., Hasler-Sheetal, H., Glud, R. N., Andersen, Thorbjørn Joest, Sejr, M. K., Middelboe, Mathias, Teske, A. & Arnosti, C., 2020, In: Limnology and Oceanography. 65, 1, p. 77-95 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Influence of bacterial uptake on deep-ocean dissolved organic carbon

    Bendtsen, J., Lundsgaard, C., Middelboe, Mathias & Archer, D., 2002, In: Global Biogeochemical Cycles. vol. 16(0), p. 1-13

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Marine Viruses: Community Dynamics, Diversity and Impact on Microbial Processes

    Breitbart, M., Middelboe, Mathias & Rohwer, F., 2008, Microbial Ecology of the Oceans. Second Edition ed. IEEE Computer Society Press, p. 443-479

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  4. Published

    Global-scale processes with a nanoscale drive - the role of marine viruses

    Brussard, C. P. D., Wilhelm, S. W., Thinhstad, T. F., Weinbauer, T. F., Bratbak, M. G., Heldal, M., Kimmance, S. A., Middelboe, Mathias, Nagasaki, K., Paul, J. H., Schroeder, D. C., Suttle, C. A., Vaque, D. & Wommack, K. E., 2008, In: ISME Journal. 2, p. 575-578

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Counting viruses and bacteria in photosynthetic microbial mats

    Carreira, C., Staal, M. J., Middelboe, Mathias & Brussaard, C. P. D., 2015, In: Applied and Environmental Microbiology. 81, 6, p. 2149-2155 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Autofluorescence imaging system to discriminate and quantify the distribution of benthic cyanobacteria and diatoms

    Carreira, C., Staal, M. J., Middelboe, Mathias & Brussaard, C. P. D., 2015, In: Limnology and Oceanography: Methods. 13, 4, p. 169-177 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Heterogeneous distribution of prokaryotes and viruses at the microscale in a tidal sediment

    Carreira, C., Larsen, M., Glud, R. N., Brussaard, C. P. D. & Middelboe, Mathias, 2013, In: Aquatic Microbial Ecology. 69, 3, p. 183-192 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Microscale spatial distributions of microbes and viruses in intertidal photosynthetic microbial mats

    Carreira, C., Piel, T., Staal, M. J., Stuut, J. W., Middelboe, Mathias & Brussaard, C. P. D., 2015, In: SpringerPlus. 4, 11 p., 239.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Disruption of photoautotrophic intertidal mats by filamentous fungi

    Carreira, C., Staal, M. J., Falkoski, D., de Vries, R. P., Middelboe, Mathias & Brussaard, C. P. D., 2015, In: Environmental Microbiology. 17, 8, p. 2910-2921 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Diversity of Flavobacterium psychrophilum and the potential use of its phages for protection against bacterial cold water disease in salmonids

    Castillo, D., Higuera, G., Villa, M., Middelboe, Mathias, Dalsgaard, I., Madsen, L. & Espejo, R. T., 2012, In: Journal of Fish Diseases Online. 35, 3, p. 193-201 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Comparative Genomic Analyses of Flavobacterium psychrophilum Isolates Reveals New Putative Genetic Determinants of Virulence Traits

    Castillo, D., Donati, V. L., Jørgensen, J., Sundell, K., Dalsgaard, I., Madsen, L., Wiklund, T. & Middelboe, Mathias, 2021, In: Microorganisms. 9, 8, 15 p., 1658.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Widespread distribution of prophage-encoded virulence factors in marine Vibrio communities

    Castillo, D., Kauffman, K., Hussain, F., Kalatzis, Panagiotis, Rørbo, N., Polz, M. F. & Middelboe, Mathias, 2018, In: Scientific Reports. 8, p. 1-9 9973.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Draft Genome Sequences of Six Vibrio diazotrophicus Strains Isolated from Deep Subsurface Sediments of the Baltic Sea

    Castillo, D., Vandieken, V., Engelen, B., Engelhardt, T. & Middelboe, Mathias, 2018, In: Genome Announcements. 6, 10, p. 1-2 e00081-18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Phage defense mechanisms and their genomic and phenotypic implications in the fish pathogen Vibrio anguillarum

    Castillo, D., Rørbo, N., Jørgensen, J., Lange, J., Tan, D., Kalatzis, Panagiotis, Svenningsen, Sine Lo & Middelboe, Mathias, 2019, In: FEMS Microbiology Ecology. 95, 3, fiz004.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Large Phenotypic and Genetic Diversity of Prophages Induced from the Fish Pathogen Vibrio anguillarum

    Castillo, D., Andersen, N., Kalatzis, Panagiotis & Middelboe, Mathias, 2019, In: Viruses. 11, 11, 15 p., 983.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    In Vitro Evolution of Specific Phages Infecting the Fish Pathogen Flavobacterium psychrophilum

    Castillo, D., Højsting, A. R., Roosvall, A., Smyrlis, G., Jørgensen, J. & Middelboe, Mathias, 2022, In: PHAGE: Therapy, Applications, and Research. 3, 1, p. 28-37 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Genome-informed approach to identify genetic determinants of Flavobacterium psychrophilum phage susceptibility

    Castillo, D., Jørgensen, J., Sundell, K., Madsen, L., Dalsgaard, I., Wiklund, T. & Middelboe, Mathias, 2021, In: Environmental Microbiology. 23, 8, p. 4185-4199 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Bacteriophage resistance mechanisms in the fish pathogen Flavobacterium psychrophilum: linking genomic mutations to changes in bacterial virulence factors

    Castillo Bermúdez, D. E., Cristiansen, R. H., Dalsgaard, I., Madsen, L. & Middelboe, Mathias, 2015, In: Applied and Environmental Microbiology. 81, 3, p. 1157-1167 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Draft genome sequences of the fish pathogen Vibrio harveyi strains VH2 and VH5

    Castillo Bermúdez, D. E., D'Alvise, P., Middelboe, Mathias, Gram, L., Liu, S., Kalatzis, Panagiotis, Kokkari, C. & Katharios, P., 2015, In: Genome Announcements. 3, 5, 2 p., e01062-15.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Genomic structure of bacteriophage 6H and its distribution as prophage in Flavobacterium psychrophilum strains

    Castillo Bermúdez, D. E., Espejo, R. & Middelboe, Mathias, 2014, In: FEMS Microbiology Letters. 351, 1, p. 51-58 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Diversity and geographical distribution of Flavobacterium psychrophilum isolates and their phages: patterns of susceptibility to phage infection and phage host range

    Castillo Bermúdez, D. E., Christiansen, R. H., Espejo, R. & Middelboe, Mathias, 2014, In: Microbial Ecology. 67, 4, p. 748-757 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Draft genome sequences of Vibrio alginolyticus strains V1 and V2, opportunistic marine pathogens

    Castillo Bermúdez, D. E., D'Alvise, P., Kalatzis, Panagiotis, Kokkari, C., Middelboe, Mathias, Gram, L., Liu, S. & Katharios, P., 2015, In: Genome Announcements. 3, 4, 2 p., e00729-15.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Draft genome sequence of Vibrio parahaemolyticus VH3, isolated from an Aquaculture environment in Greece

    Castillo Bermúdez, D. E., Jun, J. W., D'Alvise, P., Middelboe, Mathias, Gram, L., Liu, S. & Katharios, P., 2015, In: Genome Announcements. 3, 4, 2 p., e00731-15.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Comparative genome analyses of Vibrio anguillarum strains reveal a link with pathogenicity traits

    Castillo Bermúdez, D. E., Alvise, P. D., Xu, R., Zhang, F., Middelboe, Mathias & Gram, L., 28 Feb 2017, In: mSystems. 2, 1, 14 p., e00001-17.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Genomic diversity of bacteriophages infecting the fish pathogen Flavobacterium psychrophilum

    Castillo Bermúdez, D. E. & Middelboe, Mathias, 2016, In: F E M S Microbiology Letters. 363, 24, 6 p., fnw272.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Comparative genome analysis provides Insights into the pathogenicity of Flavobacterium psychrophilum

    Castillo Bermúdez, D. E., Christiansen, R. H., Dalsgaard, I., Madsen, L., Espejo, R. & Middelboe, Mathias, 2016, In: P L o S One. 11, 4, 18 p., e0152515.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Primer Registro de Abundancia Viral en Bahia Coliumo y Plataforma Continental Frente a Chile Central: First Record of Viral Abundance in Coliumo Bay and the Continental Shelf off Central Chile.

    Chiang, O. E., Middelboe, Mathias & Quiñones, R. A., 2007, In: Gayana. 71, 1, p. 124-131

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    First Record of Viral Abundance in Coliumo Bay and the Continental Shelf off Central Chile

    Chiang, O. E., Middelboe, Mathias & Quiñones, R. A., 2007, In: Gayana. 71, 1, p. 124-131

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Detection and quantification of Flavobacterium psychrophilum-specific bacteriophages In Vivo in rainbow trout upon oral administration: implications for disease control in aquaculture

    Christiansen, R. H., Dalsgaard, I., Middelboe, Mathias, Lauritsen, A. H. & Madsen, L., 2014, In: Applied and Environmental Microbiology. 80, 24, p. 7683-7693 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Effect of bacteriophages on the growth of Favobacterium psychrophilum and development of phage-resistant strains

    Christiansen, R. H., Madsen, L., Dalsgaard, I., Castillo Bermúdez, D. E., Kalatzis, P. G. & Middelboe, Mathias, 2016, In: Microbial Ecology. 71, 4, p. 845-859 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Separation of free virus from sediments in aquatic systems

    Danovaro, R. & Middelboe, Mathias, 2010, Manual of Aquatic Viral Ecology. Wilhelm, S. W., Weinbauer, M. G. & Suttle, C. A. (eds.). ASLO, p. 74-81 8 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  32. Published

    Interactions between Rainbow Trout Eyed Eggs and Flavobacterium spp. Using a Bath Challenge Model: Preliminary Evaluation of Bacteriophages as Pathogen Control Agents

    Donati, V. L., Dalsgaard, I., Runtuvuori-Salmela, A., Kunttu, H., Jørgensen, J., Castillo, D., Sundberg, L., Middelboe, Mathias & Madsen, L., 2021, In: Microorganisms. 9, 5, 31 p., 971.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Phage-Mediated Control of Flavobacterium psychrophilum in Aquaculture: In vivo Experiments to Compare Delivery Methods

    Donati, V. L., Dalsgaard, I., Sundell, K., Castillo, D., Er-Rafik, M., Clark, J., Wiklund, T., Middelboe, Mathias & Madsen, L., 2021, In: Frontiers in Microbiology. 12, 16 p., 628309.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    The Gut Microbiota of Healthy and Flavobacterium psychrophilum-Infected Rainbow Trout Fry Is Shaped by Antibiotics and Phage Therapies

    Donati, V. L., Madsen, L., Middelboe, Mathias, Strube, M. L. & Dalsgaard, I., 2022, In: Frontiers in Microbiology. 13, 21 p., 771296.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Ny viden om virus' betydning for Jordens kulstofomsætning.

    Drejet, L. & Middelboe, Mathias, 2007, In: Dansk Kemi. 88, 2, p. 11-13

    Research output: Contribution to journal › Journal article › Communication

  36. Published

    Genomic Analysis of Pasteurella atlantica Provides Insight on Its Virulence Factors and Phylogeny and Highlights the Potential of Reverse Vaccinology in Aquaculture

    Ellul, R. M., Kalatzis, Panagiotis, Frantzen, C., Haugland, G. T., Gulla, S., Colquhoun, D. J., Middelboe, Mathias, Wergeland, H. I. & Rønneseth, A., 2021, In: Microorganisms. 9, 6, 22 p., 1215.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Viral abundance and genome size distribution in the sediment and water column of marine and freshwater ecosystems

    Filippini, M. & Middelboe, Mathias, 2007, In: FEMS Microbiology Ecology. 60, p. 397-410

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Virus and bacteria dynamics of a coastal sediment: Implication for benthic carbon cycling.

    Glud, R. N. & Middelboe, Mathias, 2004, In: Limnology and Oceanography. 49(6), p. 2073-2081

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Havbunden - et levested for vigtige aktører i havets husholdning

    Glud, R. N. & Middelboe, Mathias, 2006, In: Naturens Verden. 11/12, p. 2-9

    Research output: Contribution to journal › Journal article › Research

  40. Published

    Distribution of oxygen in surface sediments from central Sagami Bay, Japan: In situ measurements by microelectrodes and planar optodes

    Glud, R. N., Wenzhöfer, F., Tengberg, A., Middelboe, Mathias, Oguri, K. & Kitazato, H., 2005, In: Deep Sea Research - Part I - Oceanographic Research Papers. Part I (52), p. 1974-1987

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    High rates of microbial carbon turnover in sediments in the deepest oceanic trench on Earth

    Glud, R. N., Wenzhöfer, F., Middelboe, Mathias, Oguri, K., Turnewitsch, R., Canfield, D. E. & Kitazato, H., 2013, In: Nature Geoscience. 6, p. 284-288 5 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  42. Published

    Utilization of marine sedimentary dissolved organic nitrogen by native anaerobic bacteria

    Guldberg, L. B., Finster, K., Jørgensen, Niels O. G., Middelboe, Mathias & Lomstein, B. A., 2002, In: Limnology and Oceanography. 47, 6, p. 1712-1722 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Viral lysis of Phaeocystis pouchetii: implications for algal population dynamics and heterotrophic C, N and P cycling

    Haaber, J. B. B. & Middelboe, Mathias, 2009, In: ISME Journal. 3, 4, p. 430-441 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Big Impact of the Tiny: Bacteriophage–Bacteria Interactions in Biofilms

    Hansen, Mads Frederik, Svenningsen, Sine Lo, Røder, Henriette Lyng, Middelboe, Mathias & Burmølle, Mette, 2019, In: Trends in Microbiology. 27, 9, p. 739-752 14 p.

    Research output: Contribution to journal › Review › Research › peer-review

  45. Published

    Effects of allochthonous dissolved organic matter input on microbial composition and nitrogen-cycling genes at two contrasting estuarine sites

    Happel, E. M., Markussen, T. M., Teikari, J. E., Huchaiah, V., Alneberg, J., Andersson, A. F., Sivonen, K., Middelboe, Mathias, Kisand, V. & Riemann, Lasse, 2019, In: F E M S Microbiology Ecology. 95, 9, 10 p., fiz123.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    P. aeruginosa flow-cell biofilms are enhanced by repeated phage treatments but can be eradicated by phage-ciprofloxacin combination: —monitoring the phage–P. aeruginosa biofilms interactions

    Henriksen, K., Rørbo, N., Rybtke, Morten Levin, Martinet, M. G., Tolker-Nielsen, Tim, Høiby, Niels, Middelboe, Mathias & Ciofu, Oana, 2019, In: Pathogens and Disease. 77, 2, 11 p., ftz011.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Dynamics of Baltic Sea phages driven by environmental changes

    Hoetzinger, M., Nilsson, E., Arabi, R., Osbeck, C. M. G., Pontiller, B., Hutinet, G., Bayfield, O. W., Traving, S., Kisand, V., Lundin, D., Pinhassi, J., Middelboe, Mathias & Holmfeldt, K., 2021, In: Environmental Microbiology. 23, 8, p. 4576-4594 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Large variabilities in host strain susceptibility and phage host range govern interactions between lytic marine phages and their Flavobacterium hosts

    Holmfeldt, K., Middelboe, Mathias, Nybroe, O. & Riemann, L., 2007, In: Applied and Environmental Microbiology. 73, 21, p. 6730-6739 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Cultivated single stranded DNA phages that infect marine Bacteroidetes prove difficult to detect with DNA binding stains

    Holmfeldt, K., Odic, D., Sullivan, M. B., Middelboe, Mathias & Riemann, Lasse, 2012, In: Applied and Environmental Microbiology. 78, 3, p. 892-894

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Reversible mutations in gliding motility and virulence genes: A flexible and efficient phage defence mechanism in Flavobacterium psychrophilum

    Jørgensen, J., Sundell, K., Castillo, D., Dramshøj, L. S., Jørgensen, N. B., Madsen, S. B., Landor, L., Wiklund, T., Donati, V. L., Madsen, L., Dalsgaard, I. & Middelboe, Mathias, 2022, In: Environmental Microbiology. 24, 10, p. 4915-4930

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Global trends in the fluorescence characteristics and distribution of marine dissolved organic matter

    Jørgensen, L., Stedmon, C., Kragh, T., Markager, S., Middelboe, Mathias & Søndergaard, M., 2011, In: Marine Chemistry. 126, 1-4, p. 139-148 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Tracing the long-term microbial production of recalcitrant fluorescent dissolved organic matter in seawater

    Jørgensen, L., Stedmon, C. A., Granskog, M. A. & Middelboe, Mathias, 2014, In: Geophysical Research Letters. 41, 7, p. 2481-2488 8 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  53. Published

    Production and transformation of dissolved neutral sugars and amino acids by bacteria in seawater

    Jørgensen, L., Lechtenfeld, O. J., Benner, R., Middelboe, Mathias & Stedmon, C. A., 2014, In: Biogeosciences. 11, p. 5349-5363 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Changes in the composition and bioavailability of dissolved organic matter during sea ice formation

    Jørgensen, L., Stedmon, C. A., Kaartokallio, H., Middelboe, Mathias & Thomas, D. N., 2015, In: Limnology and Oceanography. 60, 3, p. 817-830 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    Occurrence and bacterial cycling of D amino acid isomers in an estuarine environment

    Jørgensen, Niels O. G. & Middelboe, Mathias, 2006, In: Biogeochemistry. 81, 1, p. 77-94 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Bacteriophage Interactions with Marine Pathogenic Vibrios: Implications for Phage Therapy

    Kalatzis, Panagiotis, Castillo Bermúdez, D. E., Katharios, P. & Middelboe, Mathias, 2018, In: Antibiotics. 7, 1, 23 p., 15.

    Research output: Contribution to journal › Review › Research › peer-review

  57. Published

    Stumbling across the same phage: comparative genomics of widespread temperate phages infecting the fish pathogen Vibrio anguillarum

    Kalatzis, Panagiotis, Rørbo, N. I., Castillo Bermúdez, D. E., Mauritzen, Jesper Juel, Jørgensen, J., Kokkari, C., Zhang, F., Katharios, P. & Middelboe, Mathias, 20 May 2017, In: Viruses. 9, 5, 19 p., 122.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    Staying below the Radar: Unraveling a New Family of Ubiquitous “Cryptic” Non-Tailed Temperate Vibriophages and Implications for Their Bacterial Hosts

    Kalatzis, P. G., Mauritzen, Jesper Juel, Winther-Have, Caroline Sophie W, Michniewski, S., Millard, A., Tsertou, M. I., Katharios, P. & Middelboe, Mathias, 2023, In: International Journal of Molecular Sciences. 24, 4, 23 p., 3937.

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    Complete Genome Sequence of Vibrio anguillarum Nontailed Bacteriophage NO16

    Kalatzis, Panagiotis, Carstens, A. B., Katharios, P., Castillo, D., Hansen, L. H. & Middelboe, Mathias, 2019, In: Microbiology resource announcements. 8, 15, p. 1-2 e00020-19.

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    Isolation and characterization of a N4-like lytic bacteriophage infecting Vibrio splendidus, a pathogen of fish and bivalves

    Katharios, P., Kalatzis, Panagiotis, Kokkari, C., Sarropoulou, E. & Middelboe, Mathias, 28 Dec 2017, In: PLoS ONE. 12, 12, 14 p., e0190083.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    Comparison of Delivery Methods in Phage Therapy against Flavobacterium columnare Infections in Rainbow Trout

    Kunttu, H. M. T., Runtuvuori-Salmela, A., Middelboe, Mathias, Clark, J. & Sundberg, L. R., 2021, In: Antibiotics. 10, 8, 19 p., 914.

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    Bacteriophage Resistance Affects Flavobacterium columnare Virulence Partly via Mutations in Genes Related to Gliding Motility and the Type IX Secretion System

    Kunttu, H. M. T., Runtuvuori-Salmela, A., Sundell, K., Wiklund, T., Middelboe, Mathias, Landor, L., Ashrafi, R., Hoikkala, V. & Sundberg, L., 2021, In: Applied and Environmental Microbiology. 87, 16, 19 p., e00812-21 .

    Research output: Contribution to journal › Journal article › Research › peer-review

  63. Published

    Predation and selection for antibiotic resistance in natural environments

    Leisner, Jørgen, Jørgensen, Niels O. G. & Middelboe, Mathias, 2016, In: Evolutionary Applications (Online). 9, 3, p. 427-434 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    Interactions between the Prophage 919TP and Its Vibrio cholerae Host: Implications of gmd Mutation for Phage Resistance, Cell Auto-Aggregation, and Motility

    Li, N., Zeng, Y., Hu, B., Zhu, T., Svenningsen, Sine Lo, Middelboe, Mathias & Tan, D., 2021, In: Viruses. 13, 12, 15 p., 2342.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    Viral lysis of Micromonas pusilla: impacts on dissolved organic matter production and composition

    Lonborg, C., Middelboe, Mathias & Brussaard, C. P. D., 2013, In: Biogeochemistry. 116, 1-3, p. 231-240 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    Dispersal and survival of Flavobacterium psychrophilum phages In Vivo in rainbow trout and In Vitro under laboratory conditions: implications for their use in phage therapy

    Madsen, L., Bertelsen, S. K., Dalsgaard, I. & Middelboe, Mathias, 2013, In: Applied and Environmental Microbiology. 79, 16, p. 4853-4861 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    Coupling biogeochemical process rates and metagenomic blueprints of coastal bacterial assemblages in the context of environmental change

    Markussen, T. M., Happel, E. M., Teikari, J. E., Huchaiah, V., Alneberg, J., Andersson, A. F., Sivonen, K., Riemann, Lasse, Middelboe, Mathias & Kisand, V., 2018, In: Environmental Microbiology. 20, 8, p. 3083-3099

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    Antagonistic coevolution of marine planktonic viruses and their hosts

    Martiny, J. B. H., Riemann, Lasse, Marston, M. F. & Middelboe, Mathias, 2014, In: Annual Review of Marine Science. 6, p. 393-414 22 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. Published

    Strain-specific quorum-sensing responses determine virulence properties in Vibrio anguillarum

    Mauritzen, Jesper Juel, Søndberg, E., Kalatzis, Panagiotis, Roager, L., Gram, L., Svenningsen, Sine Lo & Middelboe, Mathias, 2023, In: Environmental Microbiology. 25, 7, 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    Beyond Cholera: Characterization of zot-Encoding Filamentous Phages in the Marine Fish Pathogen Vibrio anguillarum

    Mauritzen, Jesper Juel, Castillo, D., Tan, D., Svenningsen, Sine Lo & Middelboe, Mathias, 2020, In: Viruses. 12, 7, 17 p., 730.

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    Distribution of viruses and bacteria in relation to diagenetic activity in an estuarine sediment

    Middelboe, Mathias, Glud, R. N. & Finster, K., 2003, In: Limnology and Oceanography. 48(4), p. 1447-1456

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    Concentration and bacterial utilization of sub-micron particles and dissolved organic carbon in lakes and a coastal area

    Middelboe, Mathias & Sondergaard, M., 1 Jan 1995, In: Archiv fur Hydrobiologie. 133, 2, p. 129-147 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Microbial activity in the Greenland Sea: role of DOC lability, mineral nutrients and temperature.

    Middelboe, Mathias & Lundsgaard, C., 2003, In: Aquatic Microbial Ecology. 32, p. 151-163

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    Spatial distribution and activity of viruses in the deep-sea sediments of Sagami Bay, Japan

    Middelboe, Mathias, Glud, R. N., Wenzhöfer, F., Oguri, K. & Kitazato, H., 2006, In: Deep-Sea Res. I. 53, p. 1-13

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    Attached and free-living bacteria: Production and polymer hydrolysis during a diatom bloom

    Middelboe, Mathias, Søndergaard, M., Letarte, Y. & Borch, N. H., 1 May 1995, In: Microbial Ecology. 29, 3, p. 231-248 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    Bacteriophages drive strain diversification in a marine Flavobacterium: implications for phage resistance and physiological properties

    Middelboe, Mathias, Holmfeldt, K., Riemann, Lasse, Nybroe, O. & Haaber, J. B. B., 2009, In: Environmental Microbiology. 11, 8, p. 1971-1982 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Influence of sediment on pelagic carbon and nitrogen turnover in a shallow Danish estuary

    Middelboe, Mathias, Kroer, Niels, Jørgensen, N. O. G. & Pakulski, D., 1998, In: Microbial Ecology. 14, p. 81-90

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    Effects of Bacteriophages on the Population Dynamics of Four Strains of Pelagic Marine Bacteria

    Middelboe, Mathias, Hagström, Å., Blackburn, N., Sinn, B., Fischer, U., Borch, N. H., Pinhassi, J., Simu, K. & Lorenz, M. G., 2001, In: Microbial Ecology. 42, p. 395-406

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    Bacterial carbon cycling in a subarctic fjord: a seasonal study on microbial activity, growth efficiency, and virus-induced mortality in Kobbefjord, Greenland

    Middelboe, Mathias, Glud, R. N. & Sejr, M. K., 2012, In: Limnology and Oceanography. 57, 6, p. 1732-1742 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    Regeneration of dissolved organic matter by viral lysis in marine microbial communities

    Middelboe, Mathias & Lyck, P. G., 2002, In: Aquatic Microbial Ecology. 27, p. 187-194

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Bacterial utilization of dissolved free amino acids, dissolved combined amino acids and ammonium in the Delaware Bay estuary: effects of carbon and nitrogen limitation

    Middelboe, Mathias, Borch, N. H. & Kirchman, D. L., 1995, In: Marine Ecology - Progress Series. 128, p. 109-120 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Viral activity along a trophic gradient in continental margin sediments off central Chile

    Middelboe, Mathias & Glud, R. N., Mar 2006, In: Marine Biology Research. 2, 1, p. 41-51 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    Nye studier af bakterieplanktonets økologi

    Middelboe, Mathias, Nielsen, B. & Søndergaard, M., 1992, In: Vand og miljø. 4, p. 115-118

    Research output: Contribution to journal › Journal article › Research

  84. Published

    Viral lysis of bacteria: an important source of dissolved amino acids and cell wall compounds

    Middelboe, Mathias & Jørgensen, Niels O. G., 2006, In: Journal of the Marine Biological Association of the United Kingdom. 86, 3, p. 605-612 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    Effects of viruses on nutrient turnover and growth efficiency of noninfected marine bacterioplankton

    Middelboe, Mathias, Jørgensen, Niels O. G. & Kroer, Niels, 1996, In: Applied and Environmental Microbiology. 62, 6, p. 1991-1997 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    De frie vandmassers stofomsætning

    Middelboe, Mathias & Olesen, Michael, 2006, HAVET: Naturen i Danmark. Fenchel, T. (ed.). Gyldendal, p. 351-369

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Communication

  87. Published

    Isolation and life cycle characterization of lytic viruses infecting heterotrophic bacteria and cyanobacteria

    Middelboe, Mathias, Chan, A. & Bertelsen, S. K., 2010, Manual of aquatic viral ecology. Wilhelm, S. W., Weinbauer, M. G. & Suttle, C. A. (eds.). Waco, Tex: American Society of Limnology and Oceanography, Inc., p. 118-33 16 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  88. Published

    Virus - havbundens mindste beboere

    Middelboe, Mathias & Glud, R. N., 2006, In: Naturens Verden. 4, p. 32-40

    Research output: Contribution to journal › Journal article › Research

  89. Published

    Attached and freeliving bacteria: Production and polymer hydrolysis during a diatom bloom

    Middelboe, Mathias, Søndergaard, M., Letarte, Y. & Borch, N. H., 1995, In: Microbial Ecology. 29, p. 231-248

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    Virus - de mindste biologiske strukturer i havet.

    Middelboe, Mathias, 2003, In: Carlsbergfondets Årsskrift. IV, p. 28-35

    Research output: Contribution to journal › Journal article › Research

  91. Published

    Microbial disease in the sea: Effects of viruses on carbon and nutrient cycling

    Middelboe, Mathias, 16 Dec 2010, Infectious Disease Ecology: Effects of Ecosystems on Disease and of Disease on Ecosystems. Princeton University Press, p. 242-259 18 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  92. Published

    Virus-induced transfer of organic carbon between marine bacteria in a model community.

    Middelboe, Mathias, Riemann, Lasse, Steward, G. F., Hansen, V. & Nybroe, O., 2003, In: Aquatic Microbial Ecology. 33, 1, p. 1-10 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    Concentration and bacterial utilization of submicron particles and dissolved organic carbon in lakes and a coastal area

    Middelboe, Mathias & Søndergaard, M., 1995, In: Polskie Archiwum Hydrobiologii. 133 (2), p. 129-147

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    Viruses in freshwater ecosystems: An introduction to the exploration of viruses in new aquatic habitats

    Middelboe, Mathias, Jacquet, S. & Weinbauer, M., 2008, In: Freshwater Biology. 53, 6, p. 1069-1075

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    Viral abundance and activity in the deep sub-seafloor biosphere

    Middelboe, Mathias, Glud, R. N. & Filippini, M., 2011, In: Aquatic Microbial Ecology. 63, 1, p. 1-8

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Bacterial Growth Rate and Marine Virus-Host Dynamics

    Middelboe, Mathias, 2000, In: Microbial Ecology. 40, p. 114-124

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    Marine viruses: key players in marine ecosystems

    Middelboe, Mathias & Brussaard, C. P. D., Oct 2017, In: Viruses. 9, 10, 6 p., 302.

    Research output: Contribution to journal › Editorial › Research

  98. Published

    Bacterioplankton growth yield: Seasonal variations and coupling to substrate lability and *GB*-glucosidase activity

    Middelboe, Mathias & Søndergaard, M., 1993, In: Applied and Environmental Microbiology. 59, p. 3916-3921

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Microbial Disease in the Sea: Effects of Viruses on Marine Carbon and Nutrient Cycling

    Middelboe, Mathias, 2008, Infections Disease Ecology. Princeton University Press, p. 242-260

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  100. Published

    Bacterial utilization of dissolved organic carbon (DOC) in coastal waters - determination of growth yield.

    Middelboe, Mathias, Nielsen, B. & Søndergaard, M., 1992, In: Arch. Hydrobiol. Beih.. 37, p. 51-61

    Research output: Contribution to journal › Journal article › Research › peer-review

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