Marine Biology

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  1. Published

    Comparative Genomic Analyses of Flavobacterium psychrophilum Isolates Reveals New Putative Genetic Determinants of Virulence Traits

    Castillo, D., Donati, V. L., Jørgensen, J., Sundell, K., Dalsgaard, I., Madsen, L., Wiklund, T. & Middelboe, Mathias, 2021, In: Microorganisms. 9, 8, 15 p., 1658.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Genome Sequences of Shewanella baltica and Shewanella morhuae Strains Isolated from the Gastrointestinal Tract of Freshwater Fish

    Castillo, D., Gram, L. & Dailey, F. E., 2018, In: Genome Announcements. 6, 25, p. 1-2 e00541-18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Large Phenotypic and Genetic Diversity of Prophages Induced from the Fish Pathogen Vibrio anguillarum

    Castillo, D., Andersen, N., Kalatzis, Panagiotis & Middelboe, Mathias, 2019, In: Viruses. 11, 11, 15 p., 983.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Phage defense mechanisms and their genomic and phenotypic implications in the fish pathogen Vibrio anguillarum

    Castillo, D., Rørbo, N., Jørgensen, J., Lange, J., Tan, D., Kalatzis, Panagiotis, Svenningsen, Sine Lo & Middelboe, Mathias, 2019, In: FEMS Microbiology Ecology. 95, 3, fiz004.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Widespread distribution of prophage-encoded virulence factors in marine Vibrio communities

    Castillo, D., Kauffman, K., Hussain, F., Kalatzis, Panagiotis, Rørbo, N., Polz, M. F. & Middelboe, Mathias, 2018, In: Scientific Reports. 8, p. 1-9 9973.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Draft Genome Sequences of Six Vibrio diazotrophicus Strains Isolated from Deep Subsurface Sediments of the Baltic Sea

    Castillo, D., Vandieken, V., Engelen, B., Engelhardt, T. & Middelboe, Mathias, 2018, In: Genome Announcements. 6, 10, p. 1-2 e00081-18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    In Vitro Evolution of Specific Phages Infecting the Fish Pathogen Flavobacterium psychrophilum

    Castillo, D., Højsting, A. R., Roosvall, A., Smyrlis, G., Jørgensen, J. & Middelboe, Mathias, 2022, In: PHAGE: Therapy, Applications, and Research. 3, 1, p. 28-37 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Genome-informed approach to identify genetic determinants of Flavobacterium psychrophilum phage susceptibility

    Castillo, D., Jørgensen, J., Sundell, K., Madsen, L., Dalsgaard, I., Wiklund, T. & Middelboe, Mathias, 2021, In: Environmental Microbiology. 23, 8, p. 4185-4199 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Complete Genome Sequence of Shewanella sp. WE21, a Rare Isolate with Multiple Novel Large Genomic Islands

    Castillo, D., Gram, L. & Dailey, F. E., 2018, In: Genome Announcements. 6, 16, p. 1-2 e00277-18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Diversity of Flavobacterium psychrophilum and the potential use of its phages for protection against bacterial cold water disease in salmonids

    Castillo, D., Higuera, G., Villa, M., Middelboe, Mathias, Dalsgaard, I., Madsen, L. & Espejo, R. T., 2012, In: Journal of Fish Diseases Online. 35, 3, p. 193-201 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Kleptoplast photosynthesis is nutritionally relevant in the sea slug Elysia viridis

    Cartaxana, P., Trampe, Erik, Kühl, Michael & Cruz, S., 2017, In: Scientific Reports. 7, 10 p., 7714.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Photosynthesis from stolen chloroplasts can support sea slug reproductive fitness

    Cartaxana, P., Rey, F., LeKieffre, C., Lopes, D., Hubas, C., Spangenberg, J. E., Escrig, S., Jesus, B., Calado, G., Domingues, R., Kühl, Michael, Calado, R., Meibom, A. & Cruz, S., 2021, In: Proceedings of the Royal Society B: Biological Sciences. 288, 1959, 9 p., 20211779.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    New stalked and sessile cirripedes from the Eocene Mo Clay, northwest Jutland (Denmark)

    Carriol, R., Bonde, N. C., Jakobsen, S. L. & Høeg, Jens Thorvald, 2016, In: Museum National d'Histoire Naturelle. Geodiversitas. 38, 1, p. 21-32 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Autofluorescence imaging system to discriminate and quantify the distribution of benthic cyanobacteria and diatoms

    Carreira, C., Staal, M. J., Middelboe, Mathias & Brussaard, C. P. D., 2015, In: Limnology and Oceanography: Methods. 13, 4, p. 169-177 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Heterogeneous distribution of prokaryotes and viruses at the microscale in a tidal sediment

    Carreira, C., Larsen, M., Glud, R. N., Brussaard, C. P. D. & Middelboe, Mathias, 2013, In: Aquatic Microbial Ecology. 69, 3, p. 183-192 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Microscale spatial distributions of microbes and viruses in intertidal photosynthetic microbial mats

    Carreira, C., Piel, T., Staal, M. J., Stuut, J. W., Middelboe, Mathias & Brussaard, C. P. D., 2015, In: SpringerPlus. 4, 11 p., 239.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Fungi and viruses as important players in microbial mats

    Carreira, C., Lønborg, C., Kühl, Michael, Lillebø, A. I., Sandaa, R., Villanueva, L. & Cruz, S., 2020, In: FEMS Microbiology Ecology. 96, 11, 13 p., fiaa187.

    Research output: Contribution to journal › Review › Research › peer-review

  18. Published

    Disruption of photoautotrophic intertidal mats by filamentous fungi

    Carreira, C., Staal, M. J., Falkoski, D., de Vries, R. P., Middelboe, Mathias & Brussaard, C. P. D., 2015, In: Environmental Microbiology. 17, 8, p. 2910-2921 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Counting viruses and bacteria in photosynthetic microbial mats

    Carreira, C., Staal, M. J., Middelboe, Mathias & Brussaard, C. P. D., 2015, In: Applied and Environmental Microbiology. 81, 6, p. 2149-2155 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Hypoxia-induced retinopathy model in adult zebrafish

    Cao, Z., Jensen, L. D., Rouhi, P., Hosaka, K., Lanne, T., Steffensen, John Fleng, Wahlberg, E. & Cao, Y., 1 Dec 2010, In: Nature Protocols (Print). 5, 12, p. 1903-1910 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Light-driven oxidation of polysaccharides by photosynthetic pigments and a metalloenzyme

    Cannella, D., Möllers, K. B., Frigaard, Niels-Ulrik, Jensen, Poul Erik, Bjerrum, Morten Jannik, Johansen, Katja Salomon & Felby, C., 2016, In: Nature Communications. 7, 11134.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Erratum: Gait transition and oxygen consumption in swimming striped perch Embiotoca lateralis Agassiz (Journal of Fish Biology (2006) 69 (1612-1625))

    Cannas, M., Schaefer, J., Domenici, P. & Steffensen, John Fleng, 2007, In: Journal of Fish Biology.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Gait transition and oxygen consumption in swimming striped surfperch Embiotoca lateralis Agassiz

    Cannas, M., Schaefer, J., Domenici, P. & Steffensen, John Fleng, 2006, In: Journal of Fish Biology. 69, 6, p. 1612-1625

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Photosynthetic pigment laser-induced fluorescence indicators for the detection of changes associated with trace element stress in the diatom model species Phaeodactylum tricornutum

    Cabrita, M. T., Gameiro, C., Utkin, A. B., Duarte, B., Caçador, I. & Cartaxana, P., 2016, In: Environmental Monitoring and Assessment. 188, 5, 13 p., 285.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Legally protect marine food web’s lower echelons

    Bürkert, Johanna Sophie, Catonini, Federica, Bittner, Meriel Jennifer, Moedt, Sanne Mariël & Lützenburg, Gregor, 2023, In: Nature. 614, p. 624

    Research output: Contribution to journal › Comment/debate › Research

  26. Published

    Reshaping of sandstone surfaces by cryptoendolithic cyanobacteria: bioalkalization causes chemical weathering in arid landscapes

    Büdel, B., Weber, B., Kühl, Michael, Pfanz, H., Sültemeyer, D. & Wessel, D., 2004, In: Geobiology. 2, p. 261-268

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Macromolecular capillary permeability of three species of fish.

    Bushnell, P., Steffensen, John Fleng, Brill, R. & Jones, D., 1997, In: The FASEB Journal. 3, p. 558

    Research output: Contribution to journal › Conference abstract in journal › Research

  28. Published

    Exercise metabolism in two species of cod in arctic waters

    Bushnell, P. G., Steffensen, John Fleng, Schurmann, H. & Jones, D. R., 1994, In: Polar Biology. 14, p. 43-48

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Reproductive strategy of two deep-sea scalpellid barnacles (Crustacea: Cirripedia: Thoracica) associated with decapods and pycnogonids and the first description of a penis in scalpellid dwarf males

    Buhl-Mortensen, L. & Høeg, Jens Thorvald, 2013, In: Organisms Diversity & Evolution. 13, 4, p. 545-557 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    The nutrition of the gill parasitic monogenean Pseudodactylogyrus anguillae

    Buchmann, Kurt, Køie, M. & Prentø, P., 1987, In: Parasitology Reseach. 73, 6, p. 532-537 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Comparative and functional genomics of anoxygenic green bacteria from the taxa Chlorobi, Chloroflexi, and Acidobacteria

    Bryant, D. A., Liu, Z., Li, T., Zhao, F., Klatt, C. G., Ward, D. M., Frigaard, Niels-Ulrik & Overmann, J., 2012, Functional genomics and evolution of photosynthetic systems. Burnap, R. L. & Vermaas, W. F. J. (eds.). Springer, p. 47-102 56 p. (Advances in Photosynthesis and Respiration, Vol. 33).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  32. Published

    Chlorosome protein structure and function and the complete genome sequence of Chlorobium tepidum

    Bryant, D. A., Frigaard, Niels-Ulrik, Vassilieva, E. V. & Eisen, J. A., 2001, In: Photosynthesis Research.

    Research output: Contribution to journal › Journal article › Research

  33. Published

    Global-scale processes with a nanoscale drive - the role of marine viruses

    Brussard, C. P. D., Wilhelm, S. W., Thinhstad, T. F., Weinbauer, T. F., Bratbak, M. G., Heldal, M., Kimmance, S. A., Middelboe, Mathias, Nagasaki, K., Paul, J. H., Schroeder, D. C., Suttle, C. A., Vaque, D. & Wommack, K. E., 2008, In: ISME Journal. 2, p. 575-578

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Species associated with stipes and holdfast of Laminaria hyperborea

    Bruntse, G., Kongsrud, J. A. & Worsaae, Katrine, 1999, Marine benthic algae and invertebrate communities from the shallow waters of the Faroe Islands. p. 50-51

    Research output: Chapter in Book/Report/Conference proceeding › Report chapter › Research

  35. Published

    Discussion

    Bruntse, G., Kongsrud, J. A. & Worsaae, Katrine, 1999, Marine benthic angae and invertebrate communities from the shallow waters of the Faroe Islands. p. 62-65

    Research output: Chapter in Book/Report/Conference proceeding › Preface/postscript › Research

  36. Published

    Nitrogen cycling in deep-sea sediments of the Porcupine Abyssal Plain, NE Atlantic

    Brunnegård, J., Grandel, S., Ståhl, H., Tengberg, A. & Hall, P. O. J., 2004, In: Progress in Oceanography. 63, p. 159-181

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Accelerometer tags: detecting and identifying activities in fish and the effect of sampling frequency

    Broell, F. B., Noda, T., Wright, S., Domenici, P., Steffensen, John Fleng, Auclair, J. & Taggart, C. T., 2013, In: Journal of Experimental Biology. 216, 7, p. 1255-1264 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    ASSESSING CRYPTIC MARINE BIODIVERSITY: Environmental DNA detection, microhabitat dependences and functional ecology of cryptic fauna

    Brodnicke, O. B., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 120 p.

    Research output: Book/Report › Ph.D. thesis › Research

  39. Published

    Functional impact and trophic morphology of small, sand‐sifting fishes on coral reefs

    Brodnicke, O. B., Hansen, C. E., Huie, J. M., Brandl, S. J. & Worsaae, Katrine, 2022, In: Functional Ecology. 36, 8, p. 1936-1948 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Deep-sea sponge derived environmental DNA analysis reveals demersal fish biodiversity of a remote Arctic ecosystem

    Brodnicke, O. B., Meyer, H. K., Busch, K., Xavier, J. R., Knudsen, Steen Wilhelm, Møller, Peter Rask, Hentschel, U. H. & Sweet, M. J., 2023, In: Environmental DNA. 5, 6, p. 1405-1417 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Unravelling the links between heat stress, bleaching and disease: fate of tabular corals following a combined disease and bleaching event

    Brodnicke, O. B., Bourne, D. G., Heron, S. F., Pears, R. J., Stella, J. S., Smith, H. A. & Willis, B. L., 2019, In: Coral Reefs. 38, 4, p. 591-603 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Rhizome, Root/Sediment interactions, Aerenchyma and Internal Pressure Changes in Seagrasses

    Brodersen, Kasper Elgetti, Kühl, Michael, Nielsen, D. A., Pedersen, Ole & Larkum, A. W. D., 2018, Seagrasses of Australia: Structure, Ecology and Conservation. Larkum, A. W. D., Kendrick, G. A. & Ralph, P. J. (eds.). Springer, p. 393-418 26 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  43. Published

    Seagrass-mediated rhizosphere redox gradients are linked with ammonium accumulation driven by diazotrophs

    Brodersen, Kasper Elgetti, Moßhammer, Maria, Bittner, Meriel Jennifer, Hallstrøm, S., Santner, J., Riemann, Lasse & Kühl, Michael, 2024, In: Microbiology Spectrum. 12, 4, 20 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Effects of Epiphytes on the Seagrass Phyllosphere

    Brodersen, Kasper Elgetti & Kühl, Michael, 2022, In: Frontiers in Marine Science. 9, 10 p., 821614.

    Research output: Contribution to journal › Review › Research › peer-review

  45. Published

    Seagrass rhizosphere microenvironment alters plant-associated microbial community composition

    Brodersen, Kasper Elgetti, Siboni, N., Nielsen, D. A., Pernice, M., Ralph, P. J., Seymour, J. & Kühl, Michael, 2018, In: Environmental Microbiology. 20, 8, p. 2854-2864

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Epiphyte-cover on seagrass (Zostera marina L.) leaves impedes plant performance and radial O2 loss from the below-ground tissue

    Brodersen, Kasper Elgetti, Lichtenberg, Mads, Paz, L. & Kühl, Michael, 2015, In: Frontiers in Marine Science. 2, 11 p., 58.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Radiative energy budget reveals high photosynthetic efficiency in symbiont-bearing corals

    Brodersen, Kasper Elgetti, Lichtenberg, Mads, Ralph, P. J., Kühl, Michael & Wangpraseurt, D., 2014, In: Journal of the Royal Society. Interface. 11, 93, 11 p., 20130997.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Editorial: Ecophysiology and biogeochemistry of marine plants in the anthropocene

    Brodersen, Kasper Elgetti, Trevathan-Tackett, S. M., Noisette, F., Björk, M., Larkum, A. W. D., Holmer, M. & Kühl, Michael, 2022, In: Frontiers in Marine Science. 9, 4 p., 1010651.

    Research output: Contribution to journal › Editorial › Research › peer-review

  49. Published

    Oxic microshield and local pH enhancement protects Zostera muelleri from sediment derived hydrogen sulphide

    Brodersen, Kasper Elgetti, Nielsen, D. A., Ralph, P. J. & Kühl, Michael, 2015, In: New Phytologist. 205, 3, p. 1264–1276 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Strong leaf surface basification and CO2 limitation of seagrass induced by epiphytic biofilm microenvironments

    Brodersen, Kasper Elgetti, Koren, K., Revsbech, N. P. & Kühl, Michael, 2020, In: Plant, Cell and Environment. 43, 1, p. 174-187

    Research output: Contribution to journal › Journal article › Research › peer-review

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