Marine Biology

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  1. Published

    Comparative and functional genomics of anoxygenic green bacteria from the taxa Chlorobi, Chloroflexi, and Acidobacteria

    Bryant, D. A., Liu, Z., Li, T., Zhao, F., Klatt, C. G., Ward, D. M., Frigaard, Niels-Ulrik & Overmann, J., 2012, Functional genomics and evolution of photosynthetic systems. Burnap, R. L. & Vermaas, W. F. J. (eds.). Springer, p. 47-102 56 p. (Advances in Photosynthesis and Respiration, Vol. 33).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  2. Published

    Comparative assessment of Vibrio virulence in marine fish larvae

    Rønneseth, A., Castillo Bermúdez, D. E., D'Alvise, P., Tønnesen, Ø., Haugland, G., Grotkjær, T., Engell-Sørensen, K., Nørremark, L., Bergh, Ø., Wergeland, H. I. & Gram, L., Oct 2017, In: Journal of Fish Diseases. 40, 10, p. 1373-1385 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Comparative functional genomic analysis of two Vibrio phages reveals complex metabolic interactions with the host cell

    Skliros, D., Kalatzis, Panagiotis, Katharios, P. & Flemetakis, E., 2016, In: Frontiers in Microbiology. 7, 13 p., 1807.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Comparative genome analyses of Vibrio anguillarum strains reveal a link with pathogenicity traits

    Castillo Bermúdez, D. E., Alvise, P. D., Xu, R., Zhang, F., Middelboe, Mathias & Gram, L., 28 Feb 2017, In: mSystems. 2, 1, 14 p., e00001-17.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Comparative genome analysis provides Insights into the pathogenicity of Flavobacterium psychrophilum

    Castillo Bermúdez, D. E., Christiansen, R. H., Dalsgaard, I., Madsen, L., Espejo, R. & Middelboe, Mathias, 2016, In: P L o S One. 11, 4, 18 p., e0152515.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Comparative genomics of Stutzerimonas balearica (Pseudomonas balearica): diversity, habitats, and biodegradation of aromatic compounds

    Salvà-Serra, F., Pérez-Pantoja, D., Donoso, R. A., Jaén-Luchoro, D., Fernandez Juarez, Victor, Engström-Jakobsson, H., Moore, E. R. B., Lalucat, J. & Bennasar-Figueras, A., 2023, In: Frontiers in Microbiology. 14, 19 p., 1159176.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Comparative molecular and morphological species delineation of Halammohydra Remane, 1927 (Hydrozoa): with the description of four new species

    Tödter, L., Worsaae, Katrine & Schmidt-Rhaesa, A., 2023, In: Organisms Diversity and Evolution. 23, p. 455-476 22 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Comparative myoanatomy of cycliophoran life cycle stages

    Neves, R. C., Cunha, M. R., Funch, P., Kristensen, Reinhardt Møbjerg & Wanninger, A. W. G., 2010, In: Journal of Morphology. 271, 5, p. 596-611 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Comparative proteomics and activity of a green sulfur bacterium across the water column of Lake Cadagno, Switzerland

    Habicht, K. S., Miller, M., Cox, R. P., Frigaard, Niels-Ulrik, Tonolla, M., Peduzzi, S., Falkenby, L. G. & Andersen, J. S., 2011, In: Environmental Microbiology. 13, 1, p. 203-215 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Comparative studies of jaw morphology and ontogeny in two species of asexually reproducing Dorvilleidae (Annelida)

    Macnaughton, M. O., Eibye-Jacobsen, Danny & Worsaae, Katrine, 2011, In: Zoologischer Anzeiger. 250, 2, p. 134-142 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Comparative ultrastructure of the root system in rhizocephalan barnacles (Crustacea: Cirripedia: Rhizocephala)

    Bresciani, J. & Høeg, Jens Thorvald, 2001, In: Journal of Morphology. 249, 1, p. 9-42 34 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Comparison of Delivery Methods in Phage Therapy against Flavobacterium columnare Infections in Rainbow Trout

    Kunttu, H. M. T., Runtuvuori-Salmela, A., Middelboe, Mathias, Clark, J. & Sundberg, L. R., 2021, In: Antibiotics. 10, 8, 19 p., 914.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Comparison of metabolic rate during forced and spontaneous activity of seabream (Sparus aurata)

    Steinhausen, M. F. & Steffensen, John Fleng, 2005, In: Comparative Biochemistry and Physiology A. 3, p. S213

    Research output: Contribution to journal › Conference abstract in journal › Research

  14. Published

    Comparison of neuromuscular development in two dinophilid species (Annelida) suggests progenetic origin of Dinophilus gyrociliatus

    Kerbl, A., Fofanova, E. G., Mayorova, T. D., Voronezhskaya, E. E. & Worsaae, Katrine, 2016, In: Frontiers in Zoology. 13, 39 p., 49.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Comparison of the organic matrix found in intestinal CaCO3 precipitates produced by several marine teleost species

    Schauer, K. L., Christensen, E. A. F. & Grosell, M., 2018, In: Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology. 221, p. 15-23 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Comparison of the sedimentation of a diatom spring bloom and of a subsurface chlorophyll maximum

    Olesen, Michael, 1995, In: Marine Biology. 121, p. 541-547

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Complete Genome Sequence of Shewanella sp. WE21, a Rare Isolate with Multiple Novel Large Genomic Islands

    Castillo, D., Gram, L. & Dailey, F. E., 2018, In: Genome Announcements. 6, 16, p. 1-2 e00277-18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Complete Genome Sequence of Vibrio anguillarum Nontailed Bacteriophage NO16

    Kalatzis, Panagiotis, Carstens, A. B., Katharios, P., Castillo, D., Hansen, L. H. & Middelboe, Mathias, 2019, In: Microbiology resource announcements. 8, 15, p. 1-2 e00020-19.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Complete genome of Ignavibacterium album, a metabolically versatile, flagellated, facultative anaerobe from the phylum Chlorobi

    Liu, Z., Frigaard, Niels-Ulrik, Vogl, K., Iino, T., Ohkuma, M., Overmann, J. & Bryant, D. A., 2012, In: Frontiers in Microbiology. 3, 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Complete genome sequence of "Thiodictyon syntrophicum" sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno

    Luedin, S. M., Pothier, J. F., Danza, F., Storelli, N., Frigaard, Niels-Ulrik, Wittwer, M. & Tonolla, M., 9 May 2018, In: Standards in Genomic Sciences. 13, 14.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Complete genome sequence of Vibrio anguillarum phage CHOED successfully used for phage therapy in aquaculture

    Romero, J., Higuera, G., Gajardo, F., Castillo Bermúdez, D. E., Middelboe, Mathias, García, K., Ramírez, C. & Espejo, R. T., 2014, In: Genome Announcements. 2, 4, 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important pathogenic phenotypes

    Jakobsen, T. H., Hansen, M. A., Jensen, P. Ø., Hansen, L., Riber, L., Cockburn, A. P. I., Kolpen, M., Hansen, C. R., Ridderberg, W., Eickhardt-Sørensen, S. R., Hansen, M., Kerpedjiev, P., Alhede, M., Qvortrup, K., Burmølle, M., Moser, C. E., Kühl, M., Ciofu, O., Givskov, M., Sørensen, S. J. & 2 others, Høiby, Niels & Bjarnsholt, Thomas, 2013, In: P L o S One. 8, 7, 17 p., e68484.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Complete genome sequence of the photoautotrophic and bacteriochlorophyll e-synthesizing green sulfur bacterium Chlorobaculum limnaeum DSM 1677T

    Tank, M., Liu, Z., Frigaard, Niels-Ulrik, Tomsho, L. P., Schuster, S. C. & Bryant, D. A., Jun 2017, In: Genome Announcements. 5, 24, 2 p., e00529-17.

    Research output: Contribution to journal › Journal article › Research

  24. Published

    Complex Flagellar Motions and Swimming Patterns of the Flagellates Paraphysomonas vestita and Pteridomonas danica

    Christensen-Dalsgaard, K.K. & Fenchel, Tom, 2004, In: Protist. 155, p. 79-87

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Complex pattern formation of marine gradient bacteria explained by a simple computer model

    Thar, R. & Fenchel, Tom, 2005, In: FEMS Microbiology Letters. 246, p. 75-59

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Composition and distribution of diazotrophs in the Baltic Sea

    Salamon Slater, E. R., Turk-kubo, K. A., Hallstrøm, S., Kesy, K., Laas, P., Magasin, J., Zehr, J. P., Labrenz, M. & Riemann, Lasse, 2023, In: Estuarine, Coastal and Shelf Science. 294, 12 p., 108527.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Concentration and bacterial utilization of sub-micron particles and dissolved organic carbon in lakes and a coastal area

    Middelboe, Mathias & Sondergaard, M., 1 Jan 1995, In: Archiv fur Hydrobiologie. 133, 2, p. 129-147 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Concentration and bacterial utilization of submicron particles and dissolved organic carbon in lakes and a coastal area

    Middelboe, Mathias & Søndergaard, M., 1995, In: Polskie Archiwum Hydrobiologii. 133 (2), p. 129-147

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Concentration and transport of nitrate by the mat-forming sulphur bacterium Thioploca

    Fossing, H., Gallardo, V. A., Jørgensen, B. B., Hüttel, M., Nielsen, L. P., Schulz, H., Canfield, D. E., Foster, S., Glud, R., Gundersen, J. K., Küver, J., Ramsing, N. B., Teske, A., Thamdrup, B. & Ulloa, O., 1995, In: Nature. Vol 374, p. 713-715

    Research output: Contribution to journal › Letter › Research

  30. Published

    Consequences of increased temperature and acidification on bacterioplankton community composition during a mesocosm spring bloom in the Baltic Sea

    Lindh, M., Riemann, Lasse, Baltar, F., Romero-Oliva, C., Salomon, P., Granéli, E. & Pinhassi, J., 2013, In: Environmental Microbiology Reports. 5, 2, p. 252-262 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Conservation of Small Regulatory RNAs in Vibrio parahaemolyticus: Possible role of RNA-OUT Encoded by the Pathogenicity Island (VPaI-7) of Pandemic Strains

    Plaza, N., Perez-Reytor, D., Ramirez-Araya, S., Pavon, A., Corsini, G., Loyola, D. E., Jaña, V., Pavez, L., Navarrete, P., Bastías, R., Castillo Bermúdez, D. E. & García, K., 2019, In: International Journal of Molecular Sciences (Online). 20, 11, 15 p., 2827.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Conservation physiology of marine fishes: state of the art and prospects for policy

    McKenzie, D. J., Axelsson, M., Chabot, D., Claireaux, G., Cooke, S. J., Corner, R. A., De Boeck, G., Domenici, P., Guerreiro, P. M., Hamer, B., Jørgensen, C., Killen, S. S., Lefevre, S., Marras, S., Michaelidis, B., Nilsson, G. E., Peck, M. A., Perez-Ruzafa, A., Rijnsdorp, A. D., Shiels, H. A. & 9 others, Steffensen, John Fleng, Svendsen, J. C., Svendsen, M. B. S., Teal, L. R., van der Meer, J., Wang, T., Wilson, J. M., Wilson, R. W. & Metcalfe, J. D., 2016, In: Conservation Physiology. 4, 1, 20 p., cow046.

    Research output: Contribution to journal › Review › Research › peer-review

  33. Published

    Conservation physiology of marine fishes: advancing the predictive capacity of models

    Jørgensen, C., Peck, M. A., Antognarelli, F., Azzurro, E., Burrows, M. T., Cheung, W. W. L., Cucco, A., Holt, R. E., Huebert, K. B., Marras, S., McKenzie, D., Metcalfe, J., Perez-Ruzafa, A., Sinerchia, M., Steffensen, John Fleng, Teal, L. R. & Domenici, P., 2012, In: Biology Letters. 8, 6, p. 900-903 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Conservative route to genome compaction in a miniature annelid

    Martín-Durán, J. M., Vellutini, B. C., Marlétaz, F., Cetrangolo, V., Cvetesic, N., Thiel, D., Henriet, S., Grau-Bové, X., Carrillo-Baltodano, A. M., Gu, W., Kerbl, A., Marquez, Y., Bekkouche, N., Chourrout, D., Gómez-Skarmeta, J. L., Irimia, M., Lenhard, B., Worsaae, Katrine & Hejnol, A., 2021, In: Nature Ecology and Evolution. 5, 2, p. 231-242

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Conspicuous veils formed by vibrioid bacteria on sulfidic marine sediment

    Thar, R. M. & Kühl, Michael, 2002, In: Applied and Environmental Microbiology. 68, 12, p. 6310-6320

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Contrast and rate of light intensity decrease control directional swimming in the box jellyfish Tripedalia cystophora (Cnidaria: Cubomedusae)

    Petie, R., Garm, Anders Lydik & Nilsson, D., 2013, In: Hydrobiologia. 703, 1, p. 69-77 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Contrasting Roles of DOP as a Source of Phosphorus and Energy for Marine Diazotrophs: [Correction]

    Filella, A., Riemann, Lasse, Van Wambeke, F., Pulido-Villena, E., Vogts, A., Bonnet, S., Grosso, O., Diaz, J. M., Duhamel, S. & Benavides, M., 2022, In: Frontiers in Marine Science. 9, 10 p., 923765.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Contrasting impacts of light reduction on sediment biogeochemistry in deep- and shallow-water tropical seagrass assemblages (Green Island, Great Barrier Reef)

    Schrameyer, V., York, P. H., Chartrand, K., Ralph, P. J., Kühl, Michael, Brodersen, Kasper Elgetti & Rasheed, M. A., 2018, In: Marine Environmental Research. 136, p. 38–47 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Contributions to the Diatom flora of the Black Sea from ultrastructural and molecular studies: new records of Skeletonema marinoi, Pseudo-nitzschia pungens var. aveirensis and Chaetoceros tenuissimus for the marine flora of Turkey

    Baytut, Ö., Moestrup, Øjvind, Lundholm, Nina & Gönülol, A., 2013, In: Nova Hedwigia. 96, 3-4, p. 427-444 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Control of red cell volume and pH in trout: Effects of isoproterenol, transport inhibitors, and extracellular pH in bicarbonate/carbon dioxide-buffered media

    NIKINMAA, M., Steffensen, John Fleng, TUFTS, B. & RANDALL, D., 1987, In: Journal of Experimental Zoology. Part A: Ecological Genetics and Physiology (Print Edition). 242, 3, p. 273-281

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Convergent evolution of the ladder-like ventral nerve cord in Annelida

    Helm, C., Beckers, P., Bartolomaeus, T., Drukewitz, S. H., Kourtesis, I., Weigert, A., Purschke, G., Worsaae, Katrine, Struck, T. H. & Bleidorn, C., 2018, In: Frontiers in Zoology. 15, p. 1-17 36.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Conversion and conservation of light energy in a photosynthetic microbial mat ecosystem

    Al-Najjar, A. A., de Beer, D., Jørgensen, B. B., Kühl, Michael & Polerecky, L., 2010, In: I S M E Journal. 4, 3, p. 440-9 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Conversion and conservation of light energy in a photosynthetic microbial mat ecosystem

    Al-Najjar, A. A., De Beer, D., Jørgensen, B. B., Kühl, Michael & Polerecky, L., 2011, In: Nederlands Tijdschrift voor Medische Microbiologie. 19, Suppl., p. S98-S99

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  44. Published

    Coordination and development of a master course with many teachers - using a "Competence matrix" for the planning process.

    Worsaae, Katrine, 2010, Improving University Science Teaching and Learning : Pedagogical Projects 2008. Christiansen, F. V., Rump, C. & Degn, L. (eds.). København: Department of Science Education, University of Copenhagen, Vol. 1. p. 183 - 190 7 p.

    Research output: Chapter in Book/Report/Conference proceeding › Report chapter › Research

  45. Published

    Copepod carcasses in the subtropical convergence zone of the Sargasso Sea: implications for microbial community composition, system respiration and carbon flux

    Tang, K. W., Backhaus, L., Riemann, Lasse, Koski, M., Grossart, H., Munk, P. & Nielsen, T. G., 2019, In: Journal of Plankton Research. 41, 4, p. 549-560

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Coral photobiology studied with a new imaging pulse amplitude modulated fluorometer

    Ralph, P. J., Schreiber, U., Gademann, R., Kühl, Michael & Larkum, A. W. D., 2005, In: Journal of Phycology. 41, p. 335-342

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Coral reef survival under accelerating ocean deoxygenation

    Hughes, D. J., Alderdice, R., Cooney, C., Kühl, Michael, Pernice, M., Voolstra, C. R. & Sugget, D. J., 2020, In: Nature Climate Change. 10, 4, p. 296–307

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Coronary ligation reduces maximum sustained swimming speed in Chinook salmon, Oncorhynchus tshawytscha.

    Farrell, A. P. & Steffensen, John Fleng, 1987, In: Comparative Biochemistry and Physiology - Part A: Comparative Physiology. 87, 1, p. 35-7 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Correlation of bio-optical properties with photosynthetic pigment and microorganism distribution in microbial mats from Hamelin Pool, Australia

    Fisher, A., Wangpraseurt, D., Larkum, A. W. D., Johnson, M., Kühl, Michael, Chen, M., Wong, H. L. & Burns, B. P., 2019, In: F E M S Microbiology Ecology. 95, 1, p. 1-13 fiy219.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Cosmopolitan Metapopulations of Free-Living Microbial Eukaryotes

    Finlay, B. J. & Fenchel, Tom, 2004, In: Protist. 155, p. 237-244

    Research output: Contribution to journal › Journal article › Research › peer-review

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