A transcriptome-based phylogeny for Polynoidae (Annelida: Aphroditiformia)
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A transcriptome-based phylogeny for Polynoidae (Annelida: Aphroditiformia). / Gonzalez, Brett C.; González, Vanessa L.; Martínez, Alejandro; Worsaae, Katrine; Osborn, Karen J.
In: Molecular Phylogenetics and Evolution, Vol. 185, 107811, 2023.Research output: Contribution to journal › Journal article › Research › peer-review
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TY - JOUR
T1 - A transcriptome-based phylogeny for Polynoidae (Annelida: Aphroditiformia)
AU - Gonzalez, Brett C.
AU - González, Vanessa L.
AU - Martínez, Alejandro
AU - Worsaae, Katrine
AU - Osborn, Karen J.
N1 - Publisher Copyright: © 2023 Elsevier Inc.
PY - 2023
Y1 - 2023
N2 - Polynoidae is the most diverse radiation of Aphroditiformia and one of the most successful groups of all Annelida in terms of diversity and habitats colonized. With such an unmatched diversity, phylogenetic investigations have struggled to understand their evolutionary relationships. Previous phylogenetic analyses have slowly increased taxon sampling and employed methodologies, but despite their diversity and biological importance, large genomic sampling is limited. To investigate the internal relationships within Polynoidae, we conducted the first phylogenomic analyses of the group based on 12 transcriptomes collected from species inhabiting a broad array of habitats, including shallow and deep waters, as well as hydrothermal vents, anchialine caves and the midwater. Our phylogenomic analyses of Polynoidae recovered congruent tree topologies representing the clades Polynoinae, Macellicephalinae and Lepidonotopodinae. Members of Polynoinae and Macellicephalinae clustered in well-supported and independent clades. In contrast, Lepidonotopodinae taxa were always recovered nested within Macellicephalinae. Though our sampling only covers a small proportion of the species known for Polynoidae, our results provide a robust phylogenomic framework to build from, emphasizing previously hypothesized relationships between Macellicephalinae and Lepidonotopodinae taxa, while providing new insights on the origin of enigmatic cave and pelagic lineages.
AB - Polynoidae is the most diverse radiation of Aphroditiformia and one of the most successful groups of all Annelida in terms of diversity and habitats colonized. With such an unmatched diversity, phylogenetic investigations have struggled to understand their evolutionary relationships. Previous phylogenetic analyses have slowly increased taxon sampling and employed methodologies, but despite their diversity and biological importance, large genomic sampling is limited. To investigate the internal relationships within Polynoidae, we conducted the first phylogenomic analyses of the group based on 12 transcriptomes collected from species inhabiting a broad array of habitats, including shallow and deep waters, as well as hydrothermal vents, anchialine caves and the midwater. Our phylogenomic analyses of Polynoidae recovered congruent tree topologies representing the clades Polynoinae, Macellicephalinae and Lepidonotopodinae. Members of Polynoinae and Macellicephalinae clustered in well-supported and independent clades. In contrast, Lepidonotopodinae taxa were always recovered nested within Macellicephalinae. Though our sampling only covers a small proportion of the species known for Polynoidae, our results provide a robust phylogenomic framework to build from, emphasizing previously hypothesized relationships between Macellicephalinae and Lepidonotopodinae taxa, while providing new insights on the origin of enigmatic cave and pelagic lineages.
KW - Lepidonotopodinae
KW - Macellicephalinae
KW - Phylogenomics
KW - Scale worms
KW - Transcriptomics
U2 - 10.1016/j.ympev.2023.107811
DO - 10.1016/j.ympev.2023.107811
M3 - Journal article
C2 - 37169231
AN - SCOPUS:85160592677
VL - 185
JO - Molecular Phylogenetics and Evolution
JF - Molecular Phylogenetics and Evolution
SN - 1055-7903
M1 - 107811
ER -
ID: 356420246