Functional Genomics

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relax: the analysis of biomolecular kinetics and thermodynamics using NMR relaxation dispersion data
Morin, S., Linnet, T. E., Lescanne, M., Schanda, P., Thompson, G. S., Tollinger, M., Teilum, Kaare, Gagne, S., Marion, D., Griesinger, C., Blackledge, M. & d’Auvergne, E. J., 2014, In: Bioinformatics. 30, 15, p. 2219-2220 2 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
miRMaid: a unified programming interface for microRNA data resources
Jacobsen, A., Krogh, Anders, Kauppinen, S. & Lindow, M., 2010, In: BMC Bioinformatics. 11, Suppl 1, p. 29
Research output: Contribution to journal › Journal article › Research › peer-review
Published
mRNA Decapping Factors LSM1 and PAT Paralogs Are Involved in Turnip Mosaic Virus Viral Infection
Zuo, Zhangli Thomsen, Roux, M., Rodriguez, Eleazar & Petersen, Morten, 2022, In: Molecular plant-microbe interactions : MPMI. 35, 2, p. 125-130 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
cAMP competitively inhibits periplasmic phosphatases to coordinate nutritional growth with competence of Haemophilus influenzae
Kronborg, Kristina & Zhang, Yong, 2023, In: Journal of Biological Chemistry. 299, 12, 13 p., 105404.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
[Pregnancy within the uterine scar of a prior Caesarean section].
Hartwell, D., Hoffmann, Eva, Krebs, Lone, Langhoff-Roos, J. & Petersen, K., Aug 2010, In: Ugeskrift for Laeger.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
ZGRF1 Contributes to DNA Repair, Secondary DNA Structure Regulation, and Transcriptional Alteration
Simonsen, Anne Katrine Wrist, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 153 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
Yeast transcriptional regulator Leu3p: Self-masking, specificity of masking, and evidence for regulation by the intracellular level of Leu3p
Wang, D., Zheng, F., Holmberg, Steen & Kohlhaw, G. B., 1999, In: The Journal of Biological Chemistry. 274 (27), p. 19017-19024
Research output: Contribution to journal › Journal article › Research
Published
Where sociality and relatedness diverge: the genetic basis for hierarchical social organization in African elephants
Wittemyer, G., Okello, J. B. A., Rasmussen, H. B., Arctander, P., Nyakaana, S., Douglas-Hamilton, I. & Siegismund, Hans Redlef, 2009, In: PROCEEDINGS OF THE ROYAL SOCIETY OF LONDON SERIES B-CONTAINING PAPERS OF A BIOLOGICAL CHARACTER. 276, 1672, p. 3513-3521
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Where is the field of autophagy research heading?
Abeliovich, H., Debnath, J., Ding, W. X., Jackson, W. T., Kim, D. H., Klionsky, D. J., Ktistakis, N., Margeta, M., Münz, C., Petersen, Morten, Sadoshima, J. & Vergne, I., 2023, In: Autophagy. 19, 4, 6 p.
Research output: Contribution to journal › Editorial › Research
Published
WAR: webserver for aligning structural RNAs
Þórarinsson, E. & Lindgreen, S., 2008, In: Nucleic Acids Research. 36, Suppl. 2, p. W79-W84 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Volume of Hsp90 ligand binding and the unfolding phase diagram as a function of pressure and temperature
Petrauskas, V., Gylyte, J., Toleikis, Z., Cimmperman, P. & Matulis, D., 2013, In: European Biophysics Journal. 42, 5, p. 355-362 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Viruses of the Archaea: a unifying view
Prangishvili, D., Forterre, P. & Garrett, Roger Antony, 1 Nov 2006, In: Nature Reviews. Microbiology. 4, 11, p. 837-48 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Viruses of the Archaea
Prangishvili, D., Basta, T., Garrett, Roger Antony & Krupovic, M., 2016, In: eLS. 9 p.
Research output: Contribution to journal › Review › Research › peer-review
Published
Viruses of the Archaea
Basta, T., Garrett, Roger Antony & Prangishvili, D., 2009, Encyclopedia of Life Sciences. Wiley, p. 1-8
Research output: Chapter in Book/Report/Conference proceeding › Encyclopedia chapter › Research
Published
Viruses in acidic geothermal environments of the Kamchatka Peninsula
Bize, A., Peng, Xu, Prokofeva, M., Maclellan, K., Lucas, S., Forterre, P., Garrett, Roger Antony, Bonch-Osmolovskaya, E. A. & Prangishvili, D., 2008, In: Research in Microbiology. 159, 5, p. 358-66 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Virulence, Resistance, and Genomic Fingerprint Traits of Vibrio cholerae Isolated from 12 Species of Aquatic Products in Shanghai, China
Fu, H., Yu, P., Liang, W., Kan, B., Peng, Xu & Chen, L., 2020, In: Microbial Drug Resistance. 26, 12, p. 1526-1539 14 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Virology: Independent virus development outside a host
Häring, M., Vestergaard, G. A., Rachel, R., Chen, L., Garrett, Roger Antony & Prangishvili, D., 2005, In: Nature. 436, 7054, p. 1101-1102
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Vesicles in electric fields: some novel aspects of membrane behavior
Dimova, R., Bezlyepkina, N. & Domange Jordö, M. E., 2009, In: Soft Matter. 5, 17, p. 3201-3212 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
VapCs of Mycobacterium tuberculosis cleave RNAs essential for translation
Winther, K. S., Tree, J. J., Tollervey, D. & Gerdes, K., 2016, In: Nucleic Acids Research. 44, 20, p. 9860-9871 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Valine-Induced Isoleucine Starvation in Escherichia coli K-12 Studied by Spike-In Normalized RNA Sequencing
Gummesson, Bertil, Shah, S. A., Borum, A. S., Fessler, M., Mitarai, Namiko, Sørensen, Michael Askvad & Svenningsen, Sine Lo, 2020, In: Frontiers in Genetics. 11, 17 p., 144.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Using transcriptomics to identify and validate novel biomarkers of human skeletal muscle cancer cachexia
Stephens, N. A., Gallagher, I. J., Rooyackers, O., Skipworth, R. J., Tan, B. H., Marstrand, T. T., Ross, J. A., Guttridge, D. C., Lundell, L., Fearon, K. C. & Timmons, J. A., 2010, In: Genome Medicine. 2, 12 p., 1.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Using an alignment of fragment strings for comparing protein structures.
Friedberg, I., Harder, T., Kolodny, R., Sitbon, E., Li, Z. & Godzik, A., 2007, In: Bioinformatics. 23, 2, p. e219-24
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Uropathogenic Escherichia coli metabolite-dependent quiescence and persistence may explain antibiotic tolerance during urinary tract infection
Leatham-Jensen, M. P., Mokszycki, M. E., Rowley, D. C., Deering, R., Camberg, J. L., Sokurenko, E. V., Tchesnokova, V. L., Frimodt-Møller, Jakob, Krogfelt, K. A., Nielsen, K. L., Frimodt-Møller, N., Sun, G. & Cohen, P. S., 2016, In: mSphere. 1, 1, 22 p., e00055-15.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Upregulated baseline plasma CCL19 and CCR7 cell-surface expression on monocytes in early rheumatoid arthritis normalized during treatment and CCL19 correlated with radiographic progression
Ellingsen, T., Hansen, I., Thorsen, J., Møller, B. K., Tarp, U., Lottenburger, T., Andersen, L. S., Skjødt, H., Pedersen, J. K., Lauridsen, U. B., Svendsen, A., Lindegaard, H., Jacobsen, S., Østergaard, M., Vestergaard, A., Jurik, A. G., Junker, P., Christensen, A. F., Hetland, M. L., Hørslev-Petersen, K. & 1 others, Stengaard-Pedersen, K., 2014, In: Scandinavian Journal of Rheumatology. 43, 2, p. 91-100 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Update on non-typeable Haemophilus influenzae-mediated disease and vaccine development
Jalalvand, F. & Riesbeck, K., 3 Jun 2018, In: Expert Review of Vaccines. 17, 6, p. 503-512
Research output: Contribution to journal › Review › Research › peer-review
Published
Unveiling cell surface and type IV secretion proteins responsible for archaeal rudivirus entry
Deng, Ling, He, F., Bhoobalan, Yuvaraj, Martinez Alvarez, Laura, Guo, Y. & Peng, Xu, 2014, In: Journal of Virology. 88, 17, p. 10264-10268 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Unravelling the role of the F55 regulator in the transition from lysogeny to UV induction of sulfolobus spindle-shaped virus 1
Fusco, S., She, Q., Fiorentino, G., Bartolucci, S. & Contursi, P., 2015, In: Journal of Virology. 89, 12, p. 6453-6461 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Unmarked gene deletion and host-vector system for the hyperthermophilic crenarchaeon Sulfolobus islandicus
Deng, L., Zhu, H., Chen, Z., Liang, Y. X. & She, Q., 2009, In: Extremophiles. 13, 4, p. 735-46 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Uncovering the roots of paranoid suicidal plants
Lolle, S., 2017, Department of Biology, Faculty of Science, University of Copenhagen.
Research output: Book/Report › Ph.D. thesis › Research
Published
UBL/BAG-domain co-chaperones cause cellular stress upon overexpression through constitutive activation of Hsf1
Poulsen, E. G., Kampmeyer, Caroline, Kriegenburg, F., Johansen, Jens Vilstrup, Hofmann, K., Holmberg, Christian & Hartmann-Petersen, Rasmus, Jan 2017, In: Cell Stress & Chaperones. 22, 1, p. 143-154 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Type IV CRISPR-Cas systems are highly diverse and involved in competition between plasmids
Pinilla Redondo, Rafael, Mayo-Muñoz, D., Russel, J., Garrett, Roger Antony, Randau, L., Sørensen, Søren Johannes & Shah, S. A., 2020, In: Nucleic Acids Research. 48, 4, p. 2000-2012 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Type III CRISPR/Cas system: introduction and its application for genetic manipulations
Liu, T., Pan, S., Li, Y., Peng, N. & She, Q., 2017, The CRISPR/Cas system: emerging technology and application. Jamal, M. (ed.). Caister Academic Press, p. 1-13 13 p.
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
Published
Type III CRISPR-Cas System: Introduction And Its Application for Genetic Manipulations
Liu, T., Pan, S., Li, Y., Peng, N. & She, Q., 1 Jan 2018, In: Current Issues in Molecular Biology. 26, p. 1-14 14 p.
Research output: Contribution to journal › Review › Research › peer-review
Published
Type II and type IV toxin-antitoxin systems show different evolutionary patterns in the global Klebsiella pneumoniae population
Horesh, G., Fino, C., Harms, A., Dorman, M. J., Parts, L., Gerdes, K., Heinz, E. & Thomson, N. R., 2020, In: Nucleic Acids Research. 48, 8, p. 4357-4370 14 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Two-step activation of meiosis by the mat1 locus in Schizosaccharomyces pombe
Willer, M., Hoffmann, U., Styrkársdóttir, U., Egel, Richard, Davey, W. J., Nielsen, O. & Nielsen, Olaf, 1 Sep 1995, In: Molecular and Cellular Biology. 15, 9, p. 4964-70 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Two portable recombination enhancers direct donor choice in fission yeast heterochromatin
Jakociunas, T., Holm, L. R., Hansen, J. V., Trusina, Ala & Thon, Genevieve, 2013, In: P L o S Genetics. 9, 10, 14 p., e1003762.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Two differentially regulated Arabidopsis genes define a new branch of the DFR superfamily.
Østergaard, L., Lauvergeat, V., Naested, H., Mattsson, O. & Mundy, J., 2001, In: Plant Science. 160, 3, p. 463-472 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Two conserved modules of Schizosaccharomyces pombe Mediator regulate distinct cellular pathways
Linder, T., Rasmussen, N., Samuelsen, C. O., Chatzidaki, E., Baraznenok, V., Beve, J., Henriksen, P., Gustafsson, C. M. & Holmberg, Steen, 2008, In: Nucleic Acids Research. 36, 8, p. 2489-504 15 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Trypanosome variable surface glycoproteins: composite genes and order of expression
Thon, Genevieve, Baltz, T., Giroud, C. & Eisen, H., 1990, In: Genes & Development. 4, 8, p. 1374-1383 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Truncated glucagon-like peptide I, an insulin-releasing hormone from the distal gut
Holst, Jens Juul, Ørskov, Cathrine, Nielsen, Olaf & Schwartz, Thue W., 1987, In: F E B S Letters. 211, 2, p. 169-74 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Transposon tagging and gene targeting in Lotus japonicus
Handberg, K., Thykjaer, T., Stiller, J., She, Q. & Stougaard, J., 1993, Current Plant Science and Biotechnology in Agriculture; New horizons in nitrogen fixation (R. Palacios, J. Mora W. E. Newton eds). p. 342 1 p.
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
Published
Translocation of non-lytic antimicrobial peptides and bacteria penetrating peptides across the inner membrane of the bacterial envelope
Frimodt-Møller, Jakob, Campion, C., Nielsen, Peter E. & Løbner-Olesen, Anders, 2022, In: Current Genetics. 68, 1, p. 83-90
Research output: Contribution to journal › Review › Research › peer-review
Published
Transcriptomic analysis of the SSV2 infection of Sulfolobus solfataricus with and without the integrative plasmid pSSVi
Ren, Y., She, Q. & Huang, L., 2013, In: Virology. 441, 2, p. 126-134 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Transcriptomes of the desiccation-tolerant resurrection plant Craterostigma plantagineum
Suarez Rodriguez, M. C., Edsgärd, D., Hussain, S. S., Alquezar Planas, D. E., Rasmussen, M., Gilbert, M Thomas P, Nielsen, B. H., Bartels, D. & Mundy, J., Jul 2010, In: The Plant Journal. 63, 2, p. 212-228 17 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Transcriptome-Wide Analysis of Protein-RNA and RNA-RNA Interactions in Pathogenic Bacteria
Tree, J. J., Gerdes, K. & Tollervey, D., 2018, High-Density Sequencing Applications in Microbial Molecular Genetics. Carpousis, A. J. (ed.). Academic Press, Vol. 612. p. 467-488 (Methods in Enzymology).
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
Published
Transcriptome responses to combinations of stresses in Arabidopsis
Rasmussen, S., Barah, P., Suarez Rodriguez, M. C., Bressendorff, Simon, Friis, P., Costantino, P., Bones, A. M., Nielsen, H. B. & Mundy, J., 2013, In: Plant Physiology. 161, 4, p. 1783-1794 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Transcriptome changes in STSV2-infected Sulfolobus islandicus REY15A undergoing continuous CRISPR spacer acquisition
León Sobrino, C., Kot, W. P. & Garrett, Roger Antony, 2016, In: Molecular Microbiology. 99, 4, p. 719-728 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Transcriptome and genome size analysis of the venus flytrap
Jensen, M. K., Vogt, J. K., Bressendorff, Simon, Seguin-Orlando, A., Petersen, Morten, Sicheritz-Pontén, T. & Mundy, J., 2015, In: P L o S One. 10, 4, 13 p., e0123887.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Transcriptome analysis of Sulfolobus solfataricus infected with two related fuselloviruses reveals novel insights into the regulation of CRISPR-Cas system
Fusco, S., Liguori, R., Limauro, D., Bartolucci, S., She, Q. & Contursi, P., 2015, In: Biochimie. 118, p. 322-332 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Transcriptional repression of the yeast CHA1 gene requires the chromatin-remodeling complex RSC
Moreira, José & Holmberg, Steen, 1999, In: E M B O Journal. 18, 10, p. 2836-44 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Transcriptional regulator-mediated activation of adaptation genes triggers CRISPR de novo spacer acquisition
Liu, T., Li, Y., Wang, X., Ye, Q., Li, H., Liang, Y., She, Q. & Peng, N., 30 Jan 2015, In: Nucleic Acids Research. 43, 2, p. 1044-1055 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Transcriptional profiling of extracellular amino acid sensing in Saccharomyces cerevisiae and the role of Stp 1 p and Stp2p
Eckert-Boulet, N., Nielsen, P. S., Friis, Carsten, Moreira dos Santos, M., Nielsen, J., Kielland-Brandt, M. C. & Regenberg, Birgitte, 1 Jun 2004, In: Yeast. 21, 8, p. 635-648 14 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Transcriptional Analysis of the Genetic Element pSSVx: Differential and Temporal Regulation of Gene Expression Reveals Correlation between Transcription and Replication
Contursi, P., Cannio, R., Prato, S., She, Q., Rossi, M. & Bartolucci, S., 2007, In: Journal of Bacteriology. 189, 17, p. 6339-50 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Transcription-replication conflicts at chromosomal fragile sites—consequences in M phase and beyond
Østergaard, Vibe Hallundbæk & Lisby, Michael, Mar 2017, In: Chromosoma. 126, 2, p. 213-222 10 p.
Research output: Contribution to journal › Review › Research › peer-review
Published
Transcription termination in the plasmid/virus hybrid pSSVx from Sulfolobus islandicus
Contursi, P., Cannio, R. & She, Q., 1 Sep 2010, In: Extremophiles. 14, 5, p. 453-63 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Transcription of the Alginate Operon in Pseudomonas aeruginosa Is Regulated by c-di-GMP
Liang, Z., Rybtke, Morten Levin, Kragh, K. N., Johnson, O., Schicketanz, Muriel Leandra, Zhang, Yong, Andersen, Jens Bo & Tolker-Nielsen, Tim, 2022, In: Microbiology Spectrum. 10, 4, 13 p., e00675-22.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Toxins, Targets, and Triggers: An Overview of Toxin-Antitoxin Biology
Harms, A., Brodersen, D. E., Mitarai, Namiko & Gerdes, K., 7 Jun 2018, In: Molecular Cell. 70, 5, p. 768-784 17 p.
Research output: Contribution to journal › Review › Research › peer-review
Published
Toxin-antitoxin operon kacAT of Klebsiella pneumoniae is regulated by conditional cooperativity via a W-shaped KacA-KacT complex
Qian, H., Yu, H., Li, P., Zhu, E., Yao, Q., Tai, C., Deng, Z., Gerdes, K., He, X., Gan, J. & Ou, H., 2019, In: Nucleic Acids Research. 47, 14, p. 7690-7702
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Toxin inhibition in C. crescentus VapBC1 is mediated by a flexible pseudo-palindromic protein motif and modulated by DNA binding
Bendtsen, K. L., Xu, K., Luckmann, M., Winther, K. S., Shah, S. A., Pedersen, C. N. S. & Brodersen, D. E., 2017, In: Nucleic Acids Research. 45, 5, p. 2875-2886 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Topoisomerase II deficiency leads to a postreplicative structural shift in all Saccharomyces cerevisiae chromosomes
Ayra-Plasencia, J., Ramos-Pérez, C., Santana-Sosa, S., Quevedo, O., Medina-Suárez, S., Matos-Perdomo, E., Zamora-Dorta, M., Brown, G. W., Lisby, Michael & Machín, F., 2021, In: Scientific Reports. 11, 16 p., 14940.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
TopBP1/Dpb11 binds DNA anaphase bridges to prevent genome instability
Germann, S. M., Schramke, V., Pedersen, R. T., Gallina, I., Eckert-Boulet, N., Østergaard, Vibe Hallundbæk & Lisby, Michael, 2014, In: Journal of Cell Biology. 204, 1, p. 45-59 15 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
TopBP1-mediated DNA processing during mitosis
Gallina, I., Christiansen, S. K., Pedersen, R. T., Lisby, Michael & Østergaard, Vibe Hallundbæk, 2016, In: Cell Cycle. 15, 2, p. 176-183 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
TopBP1 makes the final call for repair on the verge of cell division
Østergaard, Vibe Hallundbæk & Lisby, Michael, 2016, In: Molecular & Cellular Oncology. 3, 2, 3 p., e1093066.
Research output: Contribution to journal › Review › Research › peer-review
Published
TopBP1 is required at mitosis to reduce transmission of DNA damage to G1 daughter cells
Pedersen, R. T., Kruse, Thomas, Nilsson, Jakob, Østergaard, Vibe Hallundbæk & Lisby, Michael, 2015, In: Journal of Cell Biology. 210, 4, p. 565-582 18 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Top2 and Sgs1-Top3 act redundantly to ensure rDNA replication termination
Mundbjerg, K., Jørgensen, S. W., Fredsøe, J. C., Nielsen, I., Pedersen, J. M., Bentsen, I. B., Lisby, Michael, Bjergbaek, L. & Andersen, A. H., 2015, In: P L o S Genetics. 11, 12, 24 p., e1005697.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Tolerance of Sulfolobus SMV1 virus to the immunity of I-A and III-B CRISPR-Cas systems in Sulfolobus islandicus
Guo, T., Han, W. & She, Q., 2019, In: RNA Biology. 16, 4, p. 549-556 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Timing of chromosomal replication in Escherichia coli
Boye, E., Løbner-Olesen, Anders & Skarstad, K., 20 Dec 1988, In: B B A - Reviews on Cancer. 951, 2-3, p. 359-64 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Thresholds for clinical importance were established to improve interpretation of the EORTC QLQ-C30 in clinical practice and research
Giesinger, J. M., Loth, F. L. C., Aaronson, N. K., Arraras, J. I., Caocci, G., Efficace, F., Grønvold, Mogens, van Leeuwen, M., Petersen, Morten, Ramage, J., Tomaszewski, K. A., Young, T., Holzner, B. & EORTC Quality of Life Group, E. Q. O. L. G., 2020, In: Journal of Clinical Epidemiology. 118, p. 1-8 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Thresholds for clinical importance were defined for the European Organisation for Research and Treatment of Cancer Computer Adaptive Testing Core-an adaptive measure of core quality of life domains in oncology clinical practice and research
Giesinger, J. M., Loth, F. L. C., Aaronson, N. K., Arraras, J. I., Caocci, G., Efficace, F., Grønvold, Mogens, van Leeuwen, M., Petersen, Morten, Ramage, J., Tomaszewski, K. A., Young, T., Holzner, B. & EORTC Quality of Life Group, E. Q. O. L. G., 2020, In: Journal of Clinical Epidemiology. 117, p. 117-125 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Three reciprocally monophyletic mtDNA lineages elucidate the taxonomic status of Grant's gazelles
Lorenzen, Eline, Arctander, P. & Siegismund, Hans Redlef, 2008, In: Conservation Genetics. 9, 3, p. 593-601
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Three genetically divergent lineages of the Oryx in eastern Africa: Evidence for an ancient introgressive hybridization
Masembe, C., Muwanika, V. B., Nyakaana, S., Arctander, P. & Siegismund, Hans Redlef, 2006, In: Conservation Genetics. 7, 4, p. 551-562
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Three additional linkage groups that repress transcription and meiotic recombination in the mating-type region of Schizosaccharomyces pombe
Thon, Genevieve, Cohen, A. & Klar, A., 1994, In: Genetics. 138, 1, p. 29-38 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Theoretical analysis of epigenetic cell memory by nucleosome modification
Dodd, I. B., Micheelsen, M. A., Sneppen, Kim & Thon, Genevieve, 2007, In: Cell. 129, 4, p. 813-22 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The transcriptional regulator GalR self-assembles to form highly regular tubular structures
Agerschou, E. D., Christiansen, G., Schafer, N. P., Madsen, D. J., Brodersen, D. E., Semsey, S. & Otzen, D. E., 2016, In: Scientific Reports. 6, 13 p., 27672 .
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
Suzuki, H., Forrest, A. R. R., van Nimwegen, E., Daub, C. O., Balwierz, P. J., Irvine, K. M., Lassmann, T., Ravasi, T., Hasegawa, Y., de Hoon, M. J. L., Katayama, S., Schroder, K., Carninci, P., Tomaru, Y., Kanamori-Katayama, M., Kubosaki, A., Akalin, A., Ando, Y., Arner, E., Asada, M. & 31 others, Asahara, H., Bailey, T., Bajic, V. B., Bauer, D., Beckhouse, A. G., Bertin, N., Björkegren, J., Brombacher, F., Bulger, E., Chalk, A. M., Chiba, J., Cloonan, N., Dawe, A., Dostie, J., Engström, P. G., Essack, M., Faulkner, G. J., Fink, J. L., Fredman, D., Fujimori, K., Furuno, M., Gojobori, T., Gough, J., Grimmond, S. M., Jacobsen, A., Krogh, Anders, Nygaard, S., Sandelin, Albin Gustav, Valen, E., Winther, Ole & Riken Omics Science Center, R. O. S. C., 2009, In: Nature Genetics. 41, 5, p. 553-62 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The transcription factor Atf1 lowers the transition barrier for nucleosome-mediated establishment of heterochromatin
Nickels, Jan Fabio, Della-Rosa, M. E., Miguelez Goyeneche, I., Charlton, Sebastian Jespersen, Sneppen, Kim & Thon, Genevieve, 2022, In: Cell Reports. 39, 7, 17 p., 110828.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The transcription elongation factor Bur1-Bur2 interacts with replication protein A and maintains genome stability during replication stress
Clausing, E., Mayer, A., Chanarat, S., Müller, B., Germann, S. M., Cramer, P., Lisby, Michael & Strässer, K., 31 Dec 2010, In: Journal of Biological Chemistry. 285, 53, p. 41665-41674 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The sxa2-dependent inactivation of the P-factor mating pheromone in the fission yeast Schizosaccharomyces pombe
Ladds, G., Rasmussen, E. M., Young, T., Nielsen, O., Davey, W. J. & Nielsen, Olaf, 1 Apr 1996, In: Molecular Microbiology. 20, 1, p. 35-42 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The smt-0 mutation which abolishes mating-type switching in fission yeast is a deletion
Styrkársdóttir, U., Egel, Richard, Nielsen, O. & Nielsen, Olaf, 1 Feb 1993, In: Current Genetics. 23, 2, p. 184-6 3 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The role of the Saccharomyces cerevisiae Rdh54 DNA translocase at kinetochores
Bacinskaja, G., 2017, Department of Biology, Faculty of Science, University of Copenhagen.
Research output: Book/Report › Ph.D. thesis › Research
Published
The role of salicylic acid in the induction of cell death in Arabidopsis acd11
Brodersen, K. P., Malinovsky, F. G., Hématy, K., Newman, Mari-Anne & Mundy, J., 2005, In: Plant Physiology. 138, 2, p. 1037-1045 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The role of dam methyltransferase in the control of DNA replication in E. coli
Boye, E. & Løbner-Olesen, Anders, 7 Sep 1990, In: Cell. 62, 5, p. 981-9 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The role of caspase 3 and BclxL in the action of interleukin 7 (IL-7): a survival factor in activated human T cells
Amos, C. L., Woetmann, Anders , Nielsen, M., Geisler, Carsten, Odum, N., Brown, B. L. & Dobson, P. R., 1998, In: Cytokine. 10, 9, p. 662-8 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The role of HERC2 and RNF8 ubiquitin E3 ligases in the promotion of translesion DNA synthesis in the chicken DT40 cell line
Mohiuddin, M., Kobayashi, S., Keka, I. S., Guilbaud, G., Sale, J., Narita, Takeo, Abdel-Aziz, H. I., Wang, X., Ogawa, S., Sasanuma, H., Chiu, R., Østergaard, Vibe Hallundbæk, Lisby, Michael & Takeda, S., Apr 2016, In: DNA Repair. 40, p. 67-76 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The role of DNA double-strand breaks in spontaneous homologous recombination in S. cerevisiae
Lettier, G., Feng, Q., De Mayolo, A. A., Erdeniz, N., Reid, R. J. D., Lisby, Michael, Mortensen, U. H. & Rothstein, R., Nov 2006, In: PLOS Genetics. 2, 11, p. 1773-1786 14 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The role of C/EBPa in PD-1+ CD4+ T cells & modulation of RNR activity prolongs survival of mice with AML
Norrie, I. C., 2013, Department of Biology, Faculty of Science, University of Copenhagen. 118 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
The ras1 function of Schizosaccharomyces pombe mediates pheromone-induced transcription
Nielsen, O., Davey, W. J., Egel, Richard & Nielsen, Olaf, 1 Apr 1992, In: E M B O Journal. 11, 4, p. 1391-5 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The rad52-Y66A allele alters the choice of donor template during spontaneous chromosomal recombination
de Mayolo, A. A., Sunjevaric, I., Reid, R., Mortensen, U. H., Rothstein, R. & Lisby, Michael, 2010, In: DNA Repair. 9, 1, p. 23-32
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The pearl millet mitogen-activated protein kinase PgMPK4 is involved in responses to downy mildew infection and in jasmonic- and salicylic acid-mediated defense
Melvin, P., Prabhu, S. A., Veena, M., Shailasree, S., Petersen, Morten, Mundy, J., Shetty, S. H. & Kini, K. R., 2015, In: Plant Molecular Biology. 87, 3, p. 287-302 16 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The pat1 protein kinase controls transcription of the mating-type genes in fission yeast
Nielsen, O., Egel, Richard & Nielsen, Olaf, 1 May 1990, In: E M B O Journal. 9, 5, p. 1401-6 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The mosaic genome structure of the Wolbachia wRi strain infecting Drosophila simulans
Klasson, L., Westberg, J., Sapountzis, P., Näslund, K., Lutnaes, Y., Darby, A. C., Veneti, Z., Chen, L., Braig, H. R., Garrett, Roger Antony, Bourtzis, K. & Andersson, S. G. E., 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 14, p. 5725-5730
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The mRNA decay factor PAT1 functions in a pathway including MAP kinase 4 and immune receptor SUMM2
Roux, M. E., Rasmussen, M. W., Palma, K., Lolle, S., Regué, À. M., Bethke, G., Glazebrook, J., Zhang, W., Sieburth, L., Larsen, M. R., Mundy, J. & Petersen, Morten, 2015, In: E M B O Journal. 34, 5, p. 593-608 16 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The mRNA decapping machinery targets LBD3/ASL9 to mediate apical hook and lateral root development
Zuo, Zhangli Thomsen, Roux, M. E., Chevalier, J. R., Dagdas, Y. F., Yamashino, T., Højgaard, S. D., Knight, E., Østergaard, L., Rodriguez, Eleazar & Petersen, Morten, 2023, In: Life Science Alliance. 6, 9, 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The life-cycle of ATV and other crenarchaeal viruses
Vestergaard, G. A., 2009, Biologisk Institut: Museum Tusculanum. 91 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
The lantibiotic NAI-107 efficiently rescues Drosophila melanogaster from infection with methicillin-resistant Staphylococcus aureus USA300
Thomsen, T. T., Mojsoska, B., Cruz, J. C. S., Donadio, S., Jenssen, H., Løbner-Olesen, Anders & Rewitz, Kim, 2016, In: Antimicrobial Agents and Chemotherapy. 60, 9, p. 5427-5436 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The kinases HipA and HipA7 phosphorylate different substrate pools in Escherichia coli to promote multidrug tolerance
Semanjski, M., Germain, E., Bratl, K., Kiessling, A., Gerdes, K. & Macek, B., 2018, In: Science Signaling. 11, 547, p. 1-13 eaat5750.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The influence of pressure on the intrinsic dissolution rate of amorphous indomethacin
Löbmann, Korbinian, Flouda, K., Qiu, D., Tsolakou, T., Wang, W. & Rades, Thomas, 2014, In: Pharmaceutics. 6, 3, p. 481-93 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The haloarchaeal MCM proteins: bioinformatic analysis and targeted mutagenesis of the β7-β8 and β9-β10 hairpin loops and conserved zinc binding domain cysteines
Kristensen, T. P., Cherian, R. M., Gray, F. C. & Macneill, S. A., 2014, In: Frontiers in Microbiology. 5, 13 p., 123.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The genome of Hyperthermus butylicus: a sulfur-reducing, peptide fermenting, neutrophilic Crenarchaeote growing up to 108 degrees C
Brügger, K., Chen, L., Stark, M., Zibat, A., Redder, P., Ruepp, A., Awayez, M., She, Q., Garrett, Roger Antony & Klenk, H., 2007, In: Archaea. 2, 2, p. 127-35 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The genome of Burkholderia cenocepacia J2315, an epidemic pathogen of cystic fibrosis patients
Holden, M. T. G., Seth-Smith, H. M. B., Crossman, L. C., Sebaihia, M., Bentley, S. D., Cerdeño-Tárraga, A. M., Thomson, N. R., Bason, N., Quail, M. A., Sharp, S., Cherevach, I., Churcher, C., Goodhead, I., Hauser, H., Holroyd, N., Mungall, K., Scott, P., Walker, D., White, B., Rose, H. & 12 others, Iversen, P., Mil-Homens, D., Rocha, E. P. C., Fialho, A. M., Baldwin, A., Dowson, C., Barrell, B. G., Govan, J. R., Vandamme, P., Hart, C. A., Mahenthiralingam, E. & Parkhill, J., 2009, In: Journal of Bacteriology. 191, 1, p. 261-77 16 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants
Li, L., Wang, S., Wang, H., Sahu, S. K., Marin, B., Li, H., Xu, Y., Liang, H., Li, Z., Cheng, S., Reder, T., Çebi, Z., Wittek, S., Petersen, M., Melkonian, B., Du, H., Yang, H., Wang, J., Wong, G. K-S., Xu, X. & 4 others, Liu, X., Van de Peer, Y., Melkonian, M. & Liu, Huan, 2020, In: Nature Ecology and Evolution. 4, 9, p. 1220-1231
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The genome of Magnolia biondii Pamp. provides insights into the evolution of Magnoliales and biosynthesis of terpenoids
Dong, S., Liu, M., Liu, Y., Chen, F., Yang, T., Chen, L., Zhang, X., Guo, X., Fang, D., Li, L., Deng, T., Yao, Z., Lang, X., Gong, Y., Wu, E., Wang, Y., Shen, Y., Gong, X., Liu, Huan & Zhang, S., 2021, In: Horticulture Research. 8, 13 p., 38.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The genome landscape of ER{alpha}- and ER{beta}-binding DNA regions.
Liu, Y., Gao, H., Marstrand, T. T., Ström, A., Valen, E., Sandelin, Albin Gustav, Gustafsson, J. & Dahlman-Wright, K., 2008, In: Proceedings of the National Academy of Science of the United States of America.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The genetic and biochemical basis of FANCD2 Monoubiquitination
Rajendra, E., Østergaard, Vibe Hallundbæk, Langevin, F., Wang, M., Dornan, G. L., Patel, K. J. & Passmore, L. A., 2014, In: Molecular Cell. 54, 5, p. 858-869 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The fission yeast ubiquitin-conjugating enzymes UbcP3, Ubc15, and Rhp6 affect transcriptional silencing of the mating-type region
Nielsen, I. S., Nielsen, Olaf, Murray, J. M. & Thon, Genevieve, 1 Aug 2002, In: Eukaryotic Cell (Online Edition). 1, 4, p. 613-25 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The fission yeast heterochromatin protein Rik1 is required for telomere clustering during meiosis
Tuzon, C. T., Borgstrøm, B., Weilguny, D., Egel, Richard, Cooper, J. P. & Nielsen, Olaf, 2004, In: Journal of Cell Biology. 165, 6, p. 759-65 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The fate of irreparable DNA double-strand breaks and eroded telomeres at the nuclear periphery
Lisby, Michael, Teixeira, T., Gilson, E. & Géli, V., 2010, In: Nucleus (Austin, Tex.). 1, 2, p. 158-161 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The extraordinary thermal stability of EstA from S. islandicus is independent of post translational modifications
Stiefler-Jensen, D., Schwarz-Linnet, T., de Lichtenberg, C., Nguyen, T. T. T. N., Rand, Kasper Dyrberg, Huang, L., She, Q. & Teilum, Kaare, Sep 2017, In: Protein Science. 26, 9, p. 1819-1827 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The expression of one ankyrin pk2 allele of the WO prophage is correlated with the Wolbachia feminizing effect in isopods
Pichon, S., Bouchon, D., Liu, C., Chen, L. & Garrett, Roger Antony, 2012, In: B M C Microbiology. 12, 55, 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The draft genome of mandrill (Mandrillus sphinx): an Old World monkey
Yin, Y., Yang, T., Liu, Huan, Huang, Z., Zhang, Y., Song, Y., Wang, W., Guang, X., Sahu, S. K. & Kristiansen, Karsten, 2020, In: Scientific Reports. 10, 8 p., 2431.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The cyclin-dependent kinase 8 module sterically blocks Mediator interactions with RNA polymerase II
Elmlund, H., Baraznenok, V., Lindahl, M., Samuelsen, C. O., Koeck, P. J. B., Holmberg, Steen, Hebert, H. & Gustafsson, C. M., 2006, In: Proceedings of the National Academy of Science of the United States of America. 103, 43, p. 15788-93 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The clr1 locus regulates the expression of the cryptic mating-type loci of fission yeast
Thon, Genevieve & Klar, A., 1992, In: Genetics. 131, 2, p. 287-296 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The chromosome-scale genomes of Dipterocarpus turbinatus and Hopea hainanensis (Dipterocarpaceae) provide insights into fragrant oleoresin biosynthesis and hardwood formation
Wang, S., Liang, H., Wang, H., Li, L., Xu, Y., Liu, Y., Liu, M., Wei, J., Ma, T., Le, C., Yang, J., He, C., Liu, J., Zhao, J., Zhao, Y., Lisby, Michael, Sahu, S. K. & Liu, H., 2022, In: Plant Biotechnology Journal. 20, 3, p. 538-553 16 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The cell biology of mitotic recombination in saccharomyces cerevisiae
Lisby, Michael & Rothstein, R., 2 May 2007, Molecular Genetics of Recombination. Aquilera, A. & Rothstein, R. (eds.). p. 335-362 28 p. (Topics in Current Genetics, Vol. 17).
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
Published
The apt/6-methylpurine counterselection system and its applications in genetic studies of the hyperthermophilic archaeon Sulfolobus islandicus
Zhang, C., She, Q., Bi, H. & Whitaker, R. J., 2016, In: Applied and Environmental Microbiology. 82, 10, p. 3070-3081 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The antibiotic micrococcin acts on protein L11 at the ribosomal GTPase centre.
Porse, Bo Torben, Cundliffe, E. & Garrett, Roger Antony, 1999, In: Journal of Molecular Biology. 287, 1, p. 33-45 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The alkaloid compound harmane increases the lifespan of Caenorhabditis elegans during bacterial infection, by modulating the nematode's innate immune response
Jakobsen, H., Bojer, Martin Saxtorph, Marinus, M. G., Xu, T., Struve, C., Krogfelt, K. A. & Løbner-Olesen, Anders, 2013, In: P L o S One. 8, 3, 8 p., e60519.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The ZGRF1 Helicase Promotes Recombinational Repair of Replication-Blocking DNA Damage in Human Cells
Brannvoll, A., Xue, X., Kwon, Y., Kompocholi, Smaragda, Simonsen, Anne Katrine Wrist, Bagge, Keerthana Stine Viswalingam, Gonzalez, L., Hickson, Ian David, Østergaard, Vibe Hallundbæk, Mankouri, H. W., Sung, P. & Lisby, Michael, 2020, In: Cell Reports. 32, 1, 25 p., 107849.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The UCSC genome browser database: update 2007.
Kuhn, R. M., Karolchik, D., Zweig, A. S., Trumbower, H., Thomas, D. J., Thakkapallayil, A., Sugnet, C. W., Stanke, M., Smith, K. E., Siepel, A., Rosenbloom, K. R., Rhead, B., Raney, B. J., Pohl, A., Pedersen, J. S., Hsu, F., Hinrichs, A. S., Harte, R. A., Diekhans, M., Clawson, H. & 5 others, Bejerano, G., Barber, G. P., Baertsch, R., Haussler, D. & Kent, W. J., 2006, In: Nucleic Acids Research. 35, Database issue, p. D668-73
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The UCSC Genome Browser Database: update 2006.
Hinrichs, A. S., Karolchik, D., Baertsch, R., Barber, G. P., Bejerano, G., Clawson, H., Diekhans, M., Furey, T. S., Harte, R. A., Hsu, F., Hillman-Jackson, J., Kuhn, R. M., Pedersen, J. S., Pohl, A., Raney, B. J., Rosenbloom, K. R., Siepel, A., Smith, K. E., Sugnet, C. W., Sultan-Qurraie, A. & 7 others, Thomas, D. J., Trumbower, H., Weber, R. J., Weirauch, M., Zweig, A. S., Haussler, D. & Kent, W. J., 2006, In: Nucleic Acids Research. 34, Database issue, p. D590-8
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The UCSC Genome Browser Database: 2008 update.
Karolchik, D., Kuhn, R. M., Baertsch, R., Barber, G. P., Clawson, H., Diekhans, M., Giardine, B., Harte, R. A., Hinrichs, A. S., Hsu, F., Kober, K. M., Miller, W., Pedersen, J. S., Pohl, A., Raney, B. J., Rhead, B., Rosenbloom, K. R., Smith, K. E., Stanke, M., Thakkapallayil, A. & 5 others, Trumbower, H., Wang, T., Zweig, A. S., Haussler, D. & Kent, W. J., 2007, In: Nucleic Acids Research. 36, Database issue, p. D773-9
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The Transducer Domain Is Important for Clamp Operation in Human DNA Topoisomerase IIα
Østergaard, Vibe Hallundbæk, Bjergbaek, L., Skouboe, C., Giangiacomo, L., Knudsen, B. R. & Andersen, A. H., 16 Jan 2004, In: Journal of Biological Chemistry. 279, 3, p. 1684-1691 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The Smc5/6 complex regulates the yeast Mph1 helicase at RNA-DNA hybrid-mediated DNA damage
Lafuente-Barquero, J., Luke-Glaser, S., Graf, M., Pinela da Silva, S. C., Gómez-González, B., Lockhart, A., Lisby, Michael, Aguilera, A. & Luke, B., 27 Dec 2017, In: PLOS Genetics. 13, 12, 25 p., e1007136.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The Smc5-Smc6 complex and SUMO modification of Rad52 regulates recombinational repair at the ribosomal gene locus.
Torres-Rosell, J., Sunjevaric, I., De Piccoli, G., Sacher, M., Eckert-Boulet, N., Reid, R., Jentsch, S., Rothstein, R., Aragón, L. & Lisby, Michael, 2007, In: Nature Cell Biology. 9, 8, p. 923-31 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The Slx5-Slx8 complex affects sumoylation of DNA repair proteins and negatively regulates recombination.
Burgess, R. C., Rahman, S., Lisby, Michael, Rothstein, R. & Zhao, X., 2007, In: Molecular and Cellular Biology. 27, 17, p. 6153-62 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The Scottish Structural Proteomics Facility: targets, methods and outputs
Oke, M., Carter, L. G., Johnson, K. A., Liu, H., McMahon, S. A., Yan, X., Kerou, M., Weikart, N. D., Kadi, N., Sheikh, M. A., Schmelz, S., Dorward, M., Zawadzki, M., Cozens, C., Falconer, H., Powers, H., Overton, I. M., van Niekerk, C. A. J., Peng, X., Patel, P. & 11 others, Garrett, Roger Antony, Prangishvili, D., Botting, C. H., Coote, P. J., Dryden, D. T. F., Barton, G. J., Schwarz-Linek, U., Challis, G. L., Taylor, G. L., White, M. F. & Naismith, J. H., 1 Jun 2010, In: Journal of Structural and Functional Genomics. 11, 2, p. 167-80 14 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The Schizosaccharomyces pombe map1 gene encodes an SRF/MCM1-related protein required for P-cell specific gene expression
Nielsen, O., Friis, T., Kjaerulff, S. & Nielsen, Olaf, 13 Dec 1996, In: Molecular and General Genetics MGG. 253, 3, p. 387-92 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The Schizosaccharomyces pombe mam1 gene encodes an ABC transporter mediating secretion of M-factor
Christensen, P. U., Davey, W. J., Nielsen, O. & Nielsen, Olaf, 1 Jun 1997, In: Molecular and General Genetics MGG. 255, 2, p. 226-36 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The Roles of Bacterial DNA Double-Strand Break Repair Proteins in Chromosomal DNA Replication
Sinha, A. K., Possoz, C. & Leach, D. R. F., 2020, In: FEMS Microbiology Reviews. 44, 3, p. 351-368
Research output: Contribution to journal › Review › Research › peer-review
Published
The Role of the CRL4^Cdt2 Target Spd1 in Chromosome Segregation in Fission Yeast
Landvad, K., 2014, Department of Biology, Faculty of Science, University of Copenhagen.
Research output: Book/Report › Ph.D. thesis › Research
Published
The Role of ZGRF1 in Recombinational Repair and Telomere Stability Maintenance
Bagge, Keerthana Stine Viswalingam, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 179 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
The Role of Outer Membrane Proteins and Lipopolysaccharides for the Sensitivity of Escherichia coli to Antimicrobial Peptides
Ebbensgaard, Anna Elisabeth, Mordhorst, H., Aarestrup, F. M. & Hansen, E. B., 2018, In: Frontiers in Microbiology. 9, p. 1-13 2153.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The Role of Efflux Pumps in the Transition from Low-Level to Clinical Antibiotic Resistance
Ebbensgaard, Anna Elisabeth, Løbner-Olesen, Anders & Frimodt-Møller, Jakob, 2020, In: Antibiotics. 9, 12, 7 p., 855.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The RelA hydrolase domain acts as a molecular switch for (p)ppGpp synthesis
Sinha, A. K. & Winther, K. S., 2021, In: Communications Biology . 4, 10 p., 434.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The Rad51 paralog complex Rad55-Rad57 acts as a molecular chaperone during homologous recombination
Roy, U., Kwon, Y., Marie, L., Symington, L., Sung, P., Lisby, Michael & Greene, E. C., 2021, In: Molecular Cell. 81, 5, p. 1043-1057.e8 23 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The RNA-splicing factor PSF/p54(nrb) controls DNA-topoisomerase I activity by a direct interaction
Straub, T., Grue, P., Uhse, A., Lisby, Michael, Knudsen, B. R., Tange, T., Westergaard, O. & Boege, F., 9 Oct 1998, In: Journal of Biological Chemistry. 273, 41, p. 26261-26264 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The RES domain toxins of RES-Xre toxin-antitoxin modules induce cell stasis by degrading NAD⁺
Skjerning, R. B., Senissar, M., Winther, K. S., Gerdes, K. & Brodersen, D. E., 2019, In: Molecular Microbiology. 111, 1, p. 221-236
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The PCNA interaction protein box sequence in Rad54 is an integral part of its ATPase domain and is required for efficient DNA repair and recombination
Burgess, R. C., Sebesta, M., Sisakova, A., Marini, V. P., Lisby, Michael, Damborsky, J., Klein, H., Rothstein, R. & Krejci, L., 2013, In: PLoS ONE. 8, 12, p. e82630 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The PCNA interaction motifs revisited: thinking outside the PIP-box
Prestel, Andreas, Wichmann, N., Martins, J. M., Marabini, R., Kassem, N., Broendum, S. S., Otterlei, M., Nielsen, Olaf, Willemoës, Martin, Ploug, Michael, Boomsma, Wouter & Kragelund, Birthe Brandt, 2019, In: Cellular and Molecular Life Sciences. 76, 24, p. 4923-4943
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The MAP kinase substrate MKS1 is a regulator of plant defense responses.
Andreasson, E., Jenkins, T., Brodersen, P., Thorgrimsen, S., Petersen, N. H. T., Zhu, S., Qiu, J., Micheelsen, P., Rocher, A., Petersen, Morten, Newman, Mari-Anne, Bjørn Nielsen, H., Hirt, H., Somssich, I., Mattsson, O. & Mundy, J., 2005, In: EMBO Journal. 24, 14, p. 2579-89 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The Interplay Between Immune Response and Bacterial Infection in COPD: Focus Upon Non-typeable Haemophilus influenzae
Su, Y., Jalalvand, F., Thegerström, J. & Riesbeck, K., 2018, In: Frontiers in Immunology. 9, p. 1-26 2530.
Research output: Contribution to journal › Review › Research › peer-review
Published
The Functional Role of TopBP1 in DNA Maintenance at Mitosis
Pedersen, R. T., 2015, Department of Biology, Faculty of Science, University of Copenhagen. 167 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
The FANCM family Mph1 helicase localizes to the mitochondria and contributes to mtDNA stability
Bernal, M., Yang, X., Lisby, Michael & Mazón, G., 2019, In: DNA Repair. 82, 11 p., 102684.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The Draft Genome of the Small, Spineless Green Alga Desmodesmus costato-granulatus (Sphaeropleales, Chlorophyta)
Wang, S., Li, L., Xu, Y., Melkonian, B., Lorenz, M., Friedl, T., Petersen, Morten, Sahu, S. K., Melkonian, M. & Liu, Huan, 2019, In: Protist. 170, 6, 5 p., 125697.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The Draft Genome of Hariotina reticulata (Sphaeropleales, Chlorophyta) Provides Insight into the Evolution of Scenedesmaceae
Xu, Y., Li, L., Liang, H., Melkonian, B., Lorenz, M., Friedl, T., Petersen, Morten, Liu, Huan, Melkonian, M. & Wang, S., 2019, In: Protist. 170, 6, 6 p., 125684.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The Draft Genome of Coelastrum proboscideum (Sphaeropleales, Chlorophyta)
Liang, H., Wang, H., Xu, Y., Li, L., Melkonian, B., Lorenz, M., Friedl, T., Sahu, S. K., Yu, J., Liu, Huan, Melkonian, M. & Wang, S., 2020, In: Protist. 171, 5, 7 p., 125758.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The DnaA protein determines the initiation mass of Escherichia coli K-12
Løbner-Olesen, Anders, Skarstad, K., Hansen, F. G., von Meyenburg, K. & Boye, E., 2 Jun 1989, In: Cell. 57, 5, p. 881-9 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The Discovery of Anti-defense Genes in Archaea
Xu, Shuanshuan, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 117 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
The DNA damage response at eroded telomeres and tethering to the nuclear pore complex
Khadaroo, B., Teixeira, M. T., Luciano, P., Eckert-Boulet, N., Germann, S. M., Simon, M. N., Gallina, I., Abdallah, P., Gilson, E., Géli, V. & Lisby, Michael, 2009, In: Nature Cell Biology. 11, 8, p. 980-7 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The Arabidopsis lue1 mutant defines a katanin p60 ortholog involved in hormonal control of microtubule orientation during cell growth.
Bouquin, T., Mattsson, O., Naested, H., Foster, R. & Mundy, J., 2003, In: Journal of Cell Science. 116, Pt 5, p. 791-801 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The E. coli HicB Antitoxin Contains a Structurally Stable Helix-Turn-Helix DNA Binding Domain
Manav, M. C., Turnbull, K. J., Jurėnas, D., Garcia-Pino, A., Gerdes, K. & Brodersen, D. E., 2019, In: Structure. 27, 11, p. 1675-1685, e1-e3
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The Cycas genome and the early evolution of seed plants
Liu, Y., Wang, S., Li, L., Yang, T., Dong, S., Wei, T., Wu, S., Liu, Y., Gong, Y., Feng, X., Ma, J., Chang, G., Huang, J., Yang, Y., Wang, H., Liu, M., Xu, Y., Liang, H., Yu, J., Cai, Y. & 45 others, Zhang, Z., Fan, Y., Mu, W., Sahu, S. K., Liu, S., Lang, X., Yang, L., Li, N., Habib, S., Yang, Y., Lindstrom, A. J., Liang, P., Goffinet, B., Zaman, S., Wegrzyn, J. L., Li, D., Liu, J., Cui, J., Sonnenschein, E. C., Wang, X., Ruan, J., Xue, J., Shao, Z., Song, C., Fan, G., Li, Z., Zhang, L., Liu, J., Liu, Z., Jiao, Y., Wang, X., Wu, H., Wang, E., Lisby, Michael, Yang, H., Wang, J., Liu, X., Xu, X., Li, N., Soltis, P. S., Van de Peer, Y., Soltis, D. E., Gong, X., Liu, H. & Zhang, S., 2022, In: Nature Plants. 8, 4, p. 389-401 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The Clausena lansium (Wampee) genome reveal new insights into the carbazole alkaloids biosynthesis pathway
Fan, Y., Sahu, S. K., Yang, T., Mu, W., Wei, J., Cheng, L., Yang, J., Liu, J., Zhao, Y., Lisby, Michael & Liu, Huan, 2021, In: Genomics. 113, 6, p. 3696-3704 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The Arabidopsis thaliana mRNA decay factor PAT1 functions in osmotic stress responses and decaps ABA-responsive genes
Zuo, Zhangli Thomsen, Roux, M. E., Sæmundsson, H. P., Müller, M., Bosch, S. M. & Petersen, Morten, 2021, In: FEBS Letters. 595, 2, p. 253-263 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The 3' region of human papillomavirus type 16 early mRNAs decrease expression
Vinther, Jeppe, Rosenstierne, M. W., Kristiansen, K. & Norrild, B., 2005, In: BMC Infectious Diseases. 5, p. 83
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Temporal phosphoproteomics reveals WEE1-dependent control of 53BP1 pathway
Petrosius, V., Benada, Jan, Nielsen, Olaf, Schoof, E. M. & Sørensen, Claus Storgaard, 2023, In: iScience. 26, 1, 24 p., 105806.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Telomeric C-circles localize at nuclear pore complexes in Saccharomyces cerevisiae
Aguilera, P., Dubarry, M., Hardy, J., Lisby, Michael, Simon, M. & Géli, V., 2022, In: EMBO Journal. 41, 6, 14 p., e108736.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Targeting synthesis of the Chromosome Replication Initiator Protein DnaA by antisense PNA-peptide conjugates in Escherichia coli
Campion, C., Charbon, Godefroid, Nielsen, Peter E. & Løbner-Olesen, Anders, 2024, In: Frontiers in Antibiotics. 3, 10 p., 1384390.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Targeting of SUMO substrates to a Cdc48-Ufd1-Npl4 segregase and STUbL pathway in fission yeast
Køhler, J. B., Tammsalu, T., Jørgensen, M. L. M., Steen, N., Hay, R. T. & Thon, Genevieve, 2015, In: Nature Communications. 6, 14 p., 8827.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
TRAP230/ARC240 and TRAP240/ARC250 Mediator subunits are functionally conserved through evolution
Samuelsen, C. O., Baraznenok, V., Khorosjutina, O., Spahr, H., Kieselbach, T., Holmberg, Steen & Gustafsson, C. M., 2003, In: Proceedings of the National Academy of Science of the United States of America. 100, 11, p. 6422-6427 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
TOPBP1 regulates RAD51 phosphorylation and chromatin loading and determines PARP inhibitor sensitivity
Moudry, P., Watanabe, K., Wolanin, K. M., Bartkova, J., Wassing, I. E., Watanabe, S., Strauss, R., Pedersen, R. T., Østergaard, Vibe Hallundbæk, Lisby, Michael, Andújar-Sánchez, M., Maya-Mendoza, A., Esashi, F., Lukas, Jiri & Bartek, J., 2016, In: The Journal of Cell Biology. 212, 3, p. 281-288 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
T_lys, a newly identified Sulfolobus spindle-shaped virus 1 transcript expressed in the lysogenic state, encodes a DNA-binding protein interacting at the promoters of the early genes
Fusco, S., She, Q., Bartolucci, S. & Contursi, P., 2013, In: Journal of Virology. 87, 10, p. 5926-5936 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Synthesis of Shld Derivatives, Their Binding to the Destabilizing Domain, and Influence on Protein Accumulation in Transgenic Plants
Jørgensen, F. P., Madsen, D., Meldal, Morten Peter, Olsen, J. V., Petersen, Morten, Granhøj, J. & Bols, Mikael, 2019, In: Journal of Medicinal Chemistry. 62, 10, p. 5191-5216 26 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Synthesis and Activity of Antimicrobial Peptides
Saporito, P., 2018, Department of Biology, Faculty of Science, University of Copenhagen.
Research output: Book/Report › Ph.D. thesis › Research
Published
Synergy between Mecillinam and Ceftazidime/Avibactam or Avibactam against Multi-Drug-Resistant Carbapenemase-Producing Escherichia coli and Klebsiella pneumoniae
List, K. K., Kolpen, Mette, Kragh, K. N., Charbon, Godefroid, Radmer, S., Hansen, F., Løbner-Olesen, Anders, Frimodt-Møller, N. & Hertz, F. B., 2022, In: Antibiotics. 11, 10, 13 p., 1280.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Synchronized switching of multiple toxin-antitoxin modules by (p)ppGpp fluctuation
Tian, C., Semsey, S. & Mitarai, Namiko, 21 Aug 2017, In: Nucleic Acids Research. 45, 14, p. 8180-8189 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Synchronization of S phase in Schizosaccharomyces pombe cells by transient exposure to M-factor pheromone
Nielsen, Olaf, 2016, In: Cold Spring Harbor Protocols. 2016, 9, p. 768-772 5 p.
Research output: Contribution to journal › Journal article › Research
Published
Survival and Genome Diversity of Vibrio parahaemolyticus Isolated from Edible Aquatic Animals
Xu, D., Peng, Xu, Xie, L. & Chen, L., 2022, In: Diversity. 14, 5, 23 p., 350.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Suppressors of Hyperinitiation in Escherichia coli Couple DNA Replication to Precursor Biosynthesis and Energy Metabolism
Bjørn, L., 2015, Department of Biology, Faculty of Science, University of Copenhagen.
Research output: Book/Report › Ph.D. thesis › Research
Published
Suppressing autoimmunity in Arabidopsis thaliana with dominant negative immune receptors
Greeff, M. C., 2014, Department of Biology, Faculty of Science, University of Copenhagen.
Research output: Book/Report › Ph.D. thesis › Research
Published
Sulfolobus genomes: mechanisms of rearrangement and change
Brügger, K., Peng, Xu & Garrett, Roger Antony, 2006, Archaea: Evolution, physiology and Molecular Biolog.
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
Published
Sulfolobus and SIRV2: An Enduring Love Story
Bhoobalan, Yuvaraj, 2019, Department of Biology, Faculty of Science, University of Copenhagen.
Research output: Book/Report › Ph.D. thesis › Research
Published
Sulfolobus Turreted Icosahedral Virus c92 Protein Responsible for the Formation of Pyramid-Like Cellular Lysis Structures
Snyder, J. C., Brumfield, S. K., Peng, N., She, Q. & Young, M. J., 2011, In: Journal of Virology. 85, 13, p. 6287-92 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Sulfolobus Replication Factor C stimulates the activity of DNA Polymerase B1
Xing, X., Zhang, L., Guo, L., She, Q. & Huang, L., 2014, In: Journal of Bacteriology. 196, 13, p. 2367-2375 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Sugar metabolism of the first thermophilic Planctomycete Thermogutta terrifontis: comparative genomic and transcriptomic approaches
Elcheninov, A. G., Menzel, P., Gudbergsdottir, S. R., Slesarev, A. I., Kadnikov, V. V., Krogh, Anders, Bonch-Osmolovskaya, E. A., Peng, Xu & Kublanov, I. V., 2 Nov 2017, In: Frontiers in Microbiology. 8, 11 p., 2140.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Substrate specificity and gene expression of the amino acid permeases in Saccharomyces cerevisiae
Regenberg, Birgitte, Düring-Olsen, L., Kielland-Brandt, M. C. & Holmberg, Steen, 1 Jan 1999, In: Current Genetics. 36, 6, p. 317-328 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Subnuclear relocalization and silencing of a chromosomal region by an ectopic ribosomal DNA repeat
Jakociunas, T., Domange Jordö, M. E., Mebarek, M. A., Bünner, C. M., Hansen, J. V., Oddershede, L. B. & Thon, Genevieve, 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 47, p. E4465-E4473 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Stygiolobus rod-shaped virus and the interplay of crenarchaeal rudiviruses with the CRISPR antiviral system
Vestergaard, G. A., Shah, S. A., Bize, A., Reitberger, W., Reuter, M., Phan, H., Briegel, A., Rachel, R., Garrett, Roger Antony & Prangishvili, D., 2008, In: Journal of Bacteriology. 190, 20, p. 6837-6845 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Studying Extrachromosomal Genetic Elements in Sulfolobus
Guannan, L., 2015, Department of Biology, Faculty of Science, University of Copenhagen. 85 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
Studies on DNA Damage Response in Sulfolobus islandicus
Han, W., 2015, Department of Biology, Faculty of Science, University of Copenhagen. 139 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
Studies of archaeal virus-host systems in thermal environments
Erdmann, S., 2013, Department of Biology, Faculty of Science, University of Copenhagen. 147 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
Structures of the Cmr-β Complex Reveal the Regulation of the Immunity Mechanism of Type III-B CRISPR-Cas
Sofos, N., Feng, M., Stella, S., Pape, T., Fuglsang, Anders, Lin, Jinzhong, Huang, Q., Li, Y., She, Q. & Montoya, Guillermo, 2020, In: Molecular Cell. 79, 5, p. 741-757
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Structured RNAs in the ENCODE selected regions of the human genome.
Washietl, S., Pedersen, J. S., Korbel, J. O., Stocsits, C., Gruber, A. R., Hackermüller, J., Hertel, J., Lindemeyer, M., Reiche, K., Tanzer, A., Ucla, C., Wyss, C., Antonarakis, S. E., Denoeud, F., Lagarde, J., Drenkow, J., Kapranov, P., Gingeras, T. R., Guigó, R., Snyder, M. & 4 others, Gerstein, M. B., Reymond, A., Hofacker, I. L. & Stadler, P. F., 2007, In: Genome Research. 17, 6, p. 852-64 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Structure-Activity Study of an All-D Antimicrobial Octapeptide D2D
Lone, A., Thomsen, T. T., Nielsen, J. E., Thulstrup, Peter Waaben, Klitgaard, R. N., Løbner-Olesen, Anders, Lund, R., Jenssen, H. & Hansen, Paul Robert, 2019, In: Molecules. 24, 24, 17 p., 4571.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Structure, function and networks of transcription factors involved in abiotic stress responses
Lindemose, Søren, O'Shea, Charlotte, Jensen, M. K. & Skriver, Karen, 2013, In: International Journal of Molecular Sciences (Online). 14, 3, p. 5842-78 37 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Structure of the replication regulator Sap1 reveals functionally important interfaces
Jørgensen, M. L. M., Ekundayo, B., Zaratiegui, M., Skriver, Karen, Thon, Genevieve & Schalch, T., 2018, In: Scientific Reports. 8, 9 p., 10930.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Structure of the acidianus filamentous virus 3 and comparative genomics of related archaeal lipothrixviruses
Vestergaard, G. A., Aramayo, R., Basta, T., Häring, M., Peng, Xu, Brügger, K., Chen, L., Rachel, R., Boisset, N., Garrett, Roger Antony & Prangishvili, D., 2008, In: Journal of Virology. 82, 1, p. 371-381 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Structure of Leptin Receptor Related with Obesity
Toleikis, Z., 2014, Department of Biology, Faculty of Science, University of Copenhagen.
Research output: Book/Report › Ph.D. thesis › Research
Published
Structure of Csx1-cOA₄ complex reveals the basis of RNA decay in Type III-B CRISPR-Cas
Molina, R., Stella, S., Feng, M., Sofos, N., Jauniskis, V., Pozdnyakova, I., López-Méndez, B., She, Q. & Montoya, Guillermo, 2019, In: Nature Communications. 10, 14 p., 4302.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Structure of African elephant populations
Siegismund, Hans Redlef & Arctander, P., 1996, In: Journal of Heredity. 86, 6, p. 467-9 2 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Structure and organ specificity of an anionic peroxidase from Arabidopsis thaliana cell suspension culture
Ostergaard, L., Abelskov, A. K., Mattsson, O. & Welinder, K. G., 1996, In: FEBS Letters. 398, 2-3, p. 243-7 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Structure and genome organization of AFV2, a novel archaeal lipothrixvirus with unusual terminal and core structures
Häring, M., Vestergaard, G. A., Brügger, K., Rachel, R., Garrett, Roger Antony & Prangishvili, D., 2005, In: Journal of Bacteriology. 187, 11, p. 3855-8 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Structural variations between small alarmone hydrolase dimers support different modes of regulation of the stringent response
Bisiak, F., Chrenková, A., Zhang, S., Pedersen, J. N., Otzen, D. E., ZHANG, YONG & Brodersen, D. E., 2022, In: Journal of Biological Chemistry. 298, 7, 16 p., 102142.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Structural basis for kinase inhibition in the tripartite E. coli HipBST toxin-antitoxin system
Bærentsen, R. L., Nielsen, S. V., Skjerning, R. B., Lyngsø, J., Bisiak, F., Pedersen, J. S., Gerdes, K., Sørensen, Michael Askvad & Brodersen, D. E., 2023, In: eLife. 12, 20 p., RP90400.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Structural basis for inhibition of an archaeal CRISPR–Cas type I-D large subunit by an anti-CRISPR protein
Manav, M. C., Van, L. B., Lin, Jinzhong, Fuglsang, Anders, Peng, Xu & Brodersen, D. E., 2020, In: Nature Communications. 11, 10 p., 5993.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Structural and genomic properties of the hyperthermophilic archaeal virus ATV with an extracellular stage of the reproductive cycle
Prangishvili, D., Vestergaard, G. A., Häring, M., Aramayo, R., Basta, T., Rachel, R. & Garrett, Roger Antony, 2006, In: Journal of Molecular Biology. 359, 5, p. 1203-1216 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Structural and Functional Characterization of an Archaeal Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR)-associated Complex for Antiviral Defense (CASCADE)
Lintner, N. G., Kerou, M., Brumfield, S. K., Graham, S., Liu, H., Naismith, J. H., Sdano, M., Peng, N., She, Q., Copié, V., Young, M. J., White, M. F. & Lawrence, C. M., 2011, In: The Journal of Biological Chemistry. 286, 24, p. 21643-56 14 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Structural analysis of sumoylated proteins in Schizosaccharomyces pombe : with a special focus on the DNA binding protein Sap1
Jørgensen, M. L. M., 2016, Department of Biology, Faculty of Science, University of Copenhagen.
Research output: Book/Report › Ph.D. thesis › Research
Published
Statistical evidence for miscoding lesions in ancient DNA templates
Hansen, Anders Johannes, Willerslev, Eske, Wiuf, C., Mourier, T. & Arctander, P., 2001, In: Molecular Biology and Evolution. 18, 2, p. 262-65 4 p.
Research output: Contribution to journal › Letter › Research
Published
Stable maintenance of the rudivirus SIRV3 in a carrier state in Sulfolobus islandicus despite activation of the CRISPR-Cas immune response by a second virus SMV1
Papathanasiou, P., Erdmann, S., Leon-Sobrino, C., Sharma, K., Urlaub, H., Garrett, Roger Antony & Peng, Xu, 2019, In: RNA Biology. 16, 4, p. 557-565
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Stability of Hyperthermophilic Proteins: Post-translational modification and other factors
Stiefler-Jensen, D., 2016, Department of Biology, Faculty of Science, University of Copenhagen.
Research output: Book/Report › Ph.D. thesis › Research
Published
Stability of Barley stripe mosaic virus-induced gene silencing in barley.
Bruun-Rasmussen, M., Madsen, C. T., Jessing, S. & Albrechtsen, M. T., 2007, In: Molecular Plant - Microbe Interactions. 20, 11, p. 1323-31 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Stability and replication control of Escherichia coli minichromosomes
Løbner-Olesen, Anders, Atlung, T. & Rasmussen, K. V., Jun 1987, In: Journal of Bacteriology. 169, 6, p. 2835-42 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Srs2 promotes Mus81-Mms4-mediated resolution of recombination intermediates
Chavdarova, M., Marini, V., Sisakova, A., Sedlackova, H., Vigasova, D., Brill, S. J., Lisby, Michael & Krejci, L., 2015, In: Nucleic Acids Research. 43, 7, p. 3626-3642 17 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Spore analysis and tetrad dissection of Schizosaccharomyces pombe
Ekwall, K. & Thon, Genevieve, Jul 2017, In: Cold Spring Harbor Protocols. 2017, 7, p. 541-544 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Spironolactone induces apoptosis and inhibits NF-kappaB independent of the mineralocorticoid receptor
Sønder, S. U. S., Woetmann, Anders , Ødum, Niels & Bendtzen, K., 2006, In: Apoptosis. 11, 12, p. 2159-65 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Specificity and function of Archaeal DNA replication initiator proteins
Samson, R., Xu, Y., Gadelha, C., Stone, T., Faqiri, J., Li, D., Qin, N., Pu, F., Liang, Y., She, Q. & Bell, S., 2013, In: Cell Reports. 3, 2, p. 485-496 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Spd2 assists Spd1 in the modulation of ribonucleotide reductase architecture but does not regulate deoxynucleotide pools
Vejrup-Hansen, R., Fleck, O., Landvad, K., Fahnøe, Ulrik, Broendum, S. S., Schreurs, A., Kragelund, Birthe Brandt, Carr, A. M., Holmberg, Christian & Nielsen, Olaf, 2014, In: Journal of Cell Science. 127, p. 2460-2470 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Spd1 accumulation causes genome instability independently of ribonucleotide reductase activity but functions to protect the genome when deoxynucleotide pools are elevated
Fleck, O., Vejrup-Hansen, R., Watson, A., Carr, A. M., Nielsen, Olaf & Holmberg, Christian, 2013, In: Journal of Cell Science. 126, p. 4985-4994 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays
Chen, A., Liao, S., Cheng, M., Ma, K., Wu, L., Lai, Y., Qiu, X., Yang, J., Xu, J., Hao, S., Wang, X., Lu, H., Chen, X., Liu, X., Huang, X., Li, Z., Hong, Y., Jiang, Y., Peng, J., Liu, S. & 49 others, Shen, M., Liu, C., Li, Q., Yuan, Y., Wei, X., Zheng, H., Feng, W., Wang, Z., Liu, Y., Wang, Z., Yang, Y., Xiang, H., Han, L., Qin, B., Guo, P., Lai, G., Muñoz-Cánoves, P., Maxwell, P. H., Thiery, J. P., Wu, Q., Zhao, F., Chen, B., Li, M., Dai, X., Wang, S., Kuang, H., Hui, J., Wang, L., Fei, J., Wang, O., Wei, X., Lu, H., Wang, B., Liu, S., Gu, Y., Ni, M., Zhang, W., Mu, F., Yin, Y., Yang, H., Lisby, Michael, Cornall, R. J., Mulder, J., Uhlén, M., Esteban, M. A., Li, Y., Liu, L., Xu, X. & Wang, J., 2022, In: Cell. 185, 10, p. 1777-1792.e21
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Spatiotemporal mapping of gene expression landscapes and developmental trajectories during zebrafish embryogenesis
Liu, C., Li, R., Li, Y., Lin, X., Zhao, K., Liu, Q., Wang, S., Yang, X., Shi, X., Ma, Y., Pei, C., Wang, H., Bao, W., Hui, J., Yang, T., Xu, Z., Lai, T., Berberoglu, M. A., Sahu, S. K., Esteban, M. A. & 8 others, Ma, K., Fan, G., Li, Y., Liu, S., CHEN, Ao, Xu, X., Dong, Z. & Liu, L., 2022, In: Developmental Cell. 57, 10, p. 1284-1298.e5
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Spatial transcriptome unveils a discontinuous inflammatory pattern in proficient mismatch repair colorectal adenocarcinoma
Zhang, R., Feng, Y., Ma, W., Guo, Y., Luo, M., Li, Y., Zang, Y., Dong, X., Lu, S., Guo, Q., Xu, Q., Chen, H., Li, Y., Liu, L., CHEN, Ao, Chen, G. & Xu, X., 2023, In: Fundamental Research. 3, 4, 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Solution properties of the archaeal CRISPR DNA repeat-binding homeodomain protein Cbp2
Kenchappa, C., Heiðarsson, P. O., Kragelund, Birthe Brandt, Garrett, Roger Antony & Poulsen, F., 2013, In: Nucleic Acids Research. 41, 5, p. 3424-3435 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Solanimycin: Biosynthesis and Distribution of a New Antifungal Antibiotic Regulated by Two Quorum-Sensing Systems
Matilla, M. A., Monson, R. E., Murphy, A., Schicketanz, Muriel Leandra, Rawlinson, A., Duncan, C., Mata, J., Leeper, F. & Salmond, G. P. C., 2022, In: mBio. 13, 6, 18 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Single-cell spatial transcriptome reveals cell-type organization in the macaque cortex
Chen, A., Sun, Y., Lei, Y., Li, C., Liao, S., Meng, J., Bai, Y., Liu, Z., Liang, Z., Zhu, Z., Yuan, N., Yang, H., Wu, Z., Lin, F., Wang, K., Li, M., Zhang, S., Yang, M., Fei, T., Zhuang, Z. & 85 others, Huang, Y., Zhang, Y., Xu, Y., Cui, L., Zhang, R., Han, L., Sun, X., Chen, B., Li, W., Huangfu, B., Ma, K., Ma, J., Li, Z., Lin, Y., Wang, H., Zhong, Y., Zhang, H., Yu, Q., Wang, Y., Liu, X., Peng, J., Liu, C., Chen, W., Pan, W., An, Y., Xia, S., Lu, Y., Wang, M., Song, X., Liu, S., Wang, Z., Gong, C., Huang, X., Yuan, Y., Zhao, Y., Chai, Q., Tan, X., Liu, J., Zheng, M., Li, S., Huang, Y., Hong, Y., Huang, Z., Li, M., Jin, M., Li, Y., Zhang, H., Sun, S., Gao, L., Bai, Y., Cheng, M., Hu, G., Liu, S., Wang, B., Xiang, B., Li, S., Li, H., Chen, M., Wang, S., Li, M., Liu, W., Liu, X., Zhao, Q., Lisby, Michael, Wang, J., Fang, J., Lin, Y., Xie, Q., He, J., Xu, H., Huang, W., Mulder, J., Yang, H., Sun, Y., Uhlen, M., Poo, M., Wang, J., Yao, J., Wei, W., Li, Y., Shen, Z., Liu, L., Liu, Z., Xu, X. & Li, C., 2023, In: Cell. 186, 17, p. 3726-3743.e24 43 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Single-cell Stereo-seq reveals induced progenitor cells involved in axolotl brain regeneration
Wei, X., Fu, S., Li, H., Liu, Y., Wang, S., Feng, W., Yang, Y., Liu, X., Zeng, Y-Y., Cheng, M., Lai, Y., Qiu, X., Wu, L., Zhang, N., Jiang, Y., Xu, J., Su, X., Peng, C., Han, L., Lou, W. P-K. & 16 others, Liu, C., Yuan, Y., Ma, K., Yang, T., Pan, X., Gao, S., CHEN, Ao, Esteban, M. A., Yang, H., Wang, J., Fan, G., Liu, L., Chen, L., Xu, X., Fei, J. & Gu, Y., 2022, In: Science. 377, 6610, 10 p., eabp9444.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Single-Nucleus RNA Sequencing and Spatial Transcriptomics Reveal the Immunological Microenvironment of Cervical Squamous Cell Carcinoma
Ou, Z., Lin, S., Qiu, J., Ding, W., Ren, P., Chen, D., Wang, J., Tong, Y., Wu, D., Chen, A., Deng, Y., Cheng, M., Peng, T., Lu, H., Yang, H., Wang, J., Jin, X., Ma, D., Xu, X., Wang, Y. & 2 others, Li, J. & Wu, P., 2022, In: Advanced Science. 9, 29, 20 p., 2203040.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Single site suppressors of a fission yeast temperature-sensitive mutant in cdc48 identified by whole genome sequencing
Marinova, I. N., Engelbrecht, J., Ewald, A., Langholm, L. L., Holmberg, Christian, Kragelund, Birthe Brandt, Gordon, C., Nielsen, Olaf & Hartmann-Petersen, Rasmus, 2015, In: P L o S One. 10, 2, 15 p., e0117779.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Signal transduction during mating and meiosis in S. pombe
Nielsen, O. & Nielsen, Olaf, 1 Feb 1993, In: Trends in Cell Biology. 3, 2, p. 60-5 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Short-term kinetics of rRNA degradation in Escherichia coli upon starvation for carbon, amino acid, or phosphate
Fessler, M., Gummesson, Bertil, Charbon, Godefroid, Svenningsen, Sine Lo & Sørensen, Michael Askvad, 2020, In: Molecular Microbiology. 113, 5, p. 951-963 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Sexual differentiation in fission yeast
Egel, Richard, Nielsen, O., Weilguny, D. & Nielsen, Olaf, 1 Nov 1990, In: Trends in Genetics. 6, 11, p. 369-73 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Setting up Schizosaccharomyces pombe crosses/matings
Ekwall, K. & Thon, Genevieve, Jul 2017, In: Cold Spring Harbor Protocols. 2017, 7, p. 533-536 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Serine-Threonine Kinases Encoded by Split hipA Homologs Inhibit Tryptophanyl-tRNA Synthetase
Nielsen, S. V., Turnbull, K. J., Roghanian, Mohammad, Bærentsen, R., Semanjski, M., Brodersen, D. E., Macek, B. & Gerdes, K., 2019, In: mBio. 10, 3, 16 p., e-01138-19.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Sequence-specific high mobility group box factors recognize 10-12-base pair minor groove motifs
van Beest, M., Dooijes, D., van De Wetering, M., Kjaerulff, S., Bonvin, A., Nielsen, O., Clevers, H. & Nielsen, Olaf, 1 Sep 2000, In: Journal of Biological Chemistry. 275, 35, p. 27266-73 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Senescence-associated barley NAC (NAM, ATAF1,2, CUC) transcription factor interacts with radical-induced cell death 1 through a disordered regulatory domain
Kjaersgaard, T., Jensen, M. K., Christiansen, M. W., Gregersen, P. L., Kragelund, Birthe Brandt & Skriver, Karen, 2011, In: Journal of Biological Chemistry. 286, 41, p. 35418-29 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Self-consuming innate immunity in Arabidopsis
Hofius, D., Mundy, J. & Petersen, Morten, 2009, In: Autophagy. 5, 8, p. 1206-7 1 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Selective and hyperactive uptake of foreign DNA by adaptive immune systems of an archaeon via two distinct mechanisms: [plus] Corrigendum
Erdmann, S. & Garrett, Roger Antony, 2012, In: Molecular Microbiology. 85, 6, p. 1044-1056 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Selection and propagation of IncP conjugative plasmids following long-term anthropogenic metal pollution in river sediments
Cyriaque, V., Jacquiod, S. J. A., Riber, Leise, Abu Al-Soud, W., Gillan, D. C., Sørensen, Søren Johannes & Wattiez, R., 2020, In: Journal of Hazardous Materials. 382, 10 p., 121173.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Selecting Schizosaccharomyces pombe diploids
Ekwall, K. & Thon, Genevieve, Jul 2017, In: Cold Spring Harbor Protocols. 2017, 7, p. 537-540 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Secretion of alpha-hemolysin by Escherichia coil disrupts tight junctions in ulcerative colitis patients
Mirsepasi-Lauridsen, H. C., Du, Z., Struve, C., Charbon, Godefroid, Karczewski, J., Krogfelt, K. A., Petersen, A. M. & Wells, J. M., 2016, In: Clinical and Translational Gastroenterology. 7, 9 p., e149.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Seawater-regulated genes for two-component systems and outer membrane proteins in myxococcus
Pan, H. W., Liu, H., Liu, T., Li, C. Y., Li, Z. F., Cai, K., Zhang, C. Y., ZHANG, YONG, Hu, W., Wu, Z. H. & Li, Y. Z., Apr 2009, In: Journal of Bacteriology. 191, 7, p. 2102-2111 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Searches for Neutrinos from Large High Altitude Air Shower Observatory Ultra-high-energy γ-Ray Sources Using the IceCube Neutrino Observatory
Abbasi, R., Ackermann, M., Adams, J., Aggarwal, N., Aguilar, J. A., Ahlers, M., Alameddine, J. M., Alves, A. A., Amin, N. M., Andeen, K., Anderson, T., Anton, G., Argüelles, C., Ashida, Y., Athanasiadou, S., Axani, S. N., Bai, X., Balagopal, V. A., Baricevic, M., Barwick, S. W. & 369 others, Basu, V., Bay, R., Beatty, J. J., Becker, K. H., Tjus, J. B., Beise, J., Bellenghi, C., Benda, S., BenZvi, S., Berley, D., Bernardini, E., Besson, D. Z., Binder, G., Bindig, D., Blaufuss, E., Blot, S., Bontempo, F., Book, J. Y., Borowka, J., Meneguolo, C. B., Böser, S., Botner, O., Böttcher, J., Bourbeau, E., Braun, J., Brinson, B., Brostean-Kaiser, J., Burley, R. T., Busse, R. S., Campana, M. A., Carnie-Bronca, E. G., Chang, Y. L., Chen, C., Chen, Z., Chirkin, D., Choi, K., Clark, B. A., Classen, L., Coleman, A., Collin, G. H., Connolly, A., Conrad, J. M., Coppin, P., Correa, P., Countryman, S., Cowen, D. F., Dappen, C., Dave, P., De Clercq, C., DeLaunay, J. J., López, D. D., Dembinski, H., Deoskar, K., Desai, A., Desiati, P., de Vries, K. D., de Wasseige, G., DeYoung, T., Diaz, A., Díaz-Vélez, J. C., Dittmer, M., Dujmovic, H., DuVernois, M. A., Ehrhardt, T., Eller, P., Engel, R., Erpenbeck, H., Evans, J., Evenson, P. A., Fan, K. L., Fazely, A. R., Fedynitch, A., Feigl, N., Fiedlschuster, S., Fienberg, A. T., Finley, C., Fischer, L., Fox, D., Franckowiak, A., Friedman, E., Fritz, A., Fürst, P., Gaisser, T. K., Gallagher, J., Ganster, E., Garcia, A., Garrappa, S., Gerhardt, L., Ghadimi, A., Glaser, C., Glauch, T., Glüsenkamp, T., Goehlke, N., Gonzalez, J. G., Goswami, S., Grant, D., Gray, Simon, Grégoire, T., Griswold, S., Günther, C., Gutjahr, P., Haack, C., Hallgren, A., Halliday, R., Halve, L., Halzen, F., Hamdaoui, H., Minh, M. H., Hanson, K., Hardin, J., Harnisch, A. A., Hatch, P., Haungs, A., Helbing, K., Hellrung, J., Henningsen, F., Heuermann, L., Hickford, S., Hidvegi, A., Hill, C., Hill, G. C., Hoffman, K. D., Hoshina, K., Hou, W., Huber, T., Hultqvist, K., Hünnefeld, M., Hussain, R., Hymon, K., In, S., Iovine, N., Ishihara, A., Jansson, M., Japaridze, G. S., Jeong, M., Jin, M., Jones, B. J. P., Kang, D., Kang, W., Kang, X., Kappes, A., Kappesser, D., Kardum, L., Karg, T., Karl, M., Karle, A., Katz, U., Kauer, M., Kelley, J. L., Kheirandish, A., Kin, K., Kiryluk, J., Klein, S. R., Kochocki, A., Koirala, R., Kolanoski, H., Kontrimas, T., Köpke, L., Kopper, C., Koskinen, D. Jason, Koundal, P., Kovacevich, M., Kowalski, M., Kozynets, T., Kruiswijk, K., Krupczak, E., Kun, E., Kurahashi, N., Lad, N., Gualda, C. L., Lamoureux, M., Larson, M. J., Lauber, F., Lazar, J. P., Lee, J. W., DeHolton, K. L., Leszczyńska, A., Lincetto, M., Liu, Q. R., Liubarska, M., Lohfink, E., Love, C., Mariscal, C. J. L., Lu, L., Lucarelli, F., Ludwig, A., Luszczak, W., Lyu, Y., Ma, W. Y., Madsen, J., Mahn, K. B. M., Makino, Y., Mancina, S., Sainte, W. M., Mariş, I. C., Marka, S., Marka, Z., Marsee, M., Martinez-Soler, I., Maruyama, R., Mayhew, F., McElroy, T., McNally, F., Mead, J. V., Meagher, K., Mechbal, S., Medina, A., Meier, M., Meighen-Berger, S., Merckx, Y., Micallef, J., Mockler, D., Montaruli, T., Moore, R. W., Morse, R., Moulai, M., Mukherjee, T., Naab, R., Nagai, R., Naumann, U., Nayerhoda, A., Necker, J., Neumann, M., Niederhausen, H., Nisa, M. U., Noell, A., Nowicki, S. C., Pollmann, A. O., Oehler, M., Oeyen, B., Olivas, A., Orsoe, R., Osborn, J., O’Sullivan, E., Pandya, H., Pankova, D. V., Park, N., Parker, G. K., Paudel, E. N., Paul, L., de los Heros, C. P., Peterson, J., Philippen, S., Pieper, S., Pizzuto, A., Plum, M., Popovych, Y., Porcelli, A., Rodriguez, M. P., Pries, B., Procter-Murphy, R., Przybylski, G. T., Raab, C., Rack-Helleis, J., Rameez, M., Rawlins, K., Rechav, Z., Rehman, A., Reichherzer, P., Renzi, G., Resconi, E., Reusch, S., Rhode, W., Richman, M., Riedel, B., Roberts, E. J., Robertson, S., Rodan, S., Roellinghoff, G., Rongen, M., Rott, C., Ruhe, T., Ruohan, L., Ryckbosch, D., Cantu, D. R., Safa, I., Saffer, J., Salazar-Gallegos, D., Sampathkumar, P., Sanchez Herrera, S. E., Sandrock, A., Santander, M., Sarkar, S., Sarkar, S., Savelberg, J., Schaufel, M., Schieler, H., Schindler, S., Schlueter, B., Schmidt, T., Schneider, J., Schröder, F. G., Schumacher, L., Schwefer, G., Sclafani, S., Seckel, D., Seunarine, S., Sharma, A., Shefali, S., Shimizu, N., Silva, M., Skrzypek, B., Smithers, B., Snihur, R., Soedingrekso, J., Søgaard, A., Soldin, D., Spannfellner, C., Spiczak, G. M., Spiering, C., Stamatikos, M., Stanev, T., Stein, R., Stezelberger, T., Stürwald, T., Stuttard, Thomas Simon, Sullivan, G. W., Taboada, I., Ter-Antonyan, S., Thompson, W. G., Thwaites, J., Tilav, S., Tollefson, K., Tönnis, C., Toscano, S., Tosi, D., Trettin, A., Tung, C. F., Turcotte, R., Twagirayezu, J. P., Ty, B., Elorrieta, M. A. U., Upshaw, K., Valtonen-Mattila, N., Vandenbroucke, J., Eijndhoven, N. V., Vannerom, D., Santen, J. V., Vara, J., Veitch-Michaelis, J., Verpoest, S., Veske, D., Walck, C., Wang, W., Watson, T. B., Weaver, C., Weigel, P., Weindl, A., Weldert, J., Wendt, C., Werthebach, J., Weyrauch, M., Whitehorn, N., Wiebusch, C. H., Willey, N., Williams, D. R., Wolf, M., Wrede, G., Wulff, J., Xu, D. L., Xu, X. W., Yanez, J. P., Yasutsugu, M., Yildizci, E., Yoshida, S., Yu, S., Yuan, T., Zhang, Z. & Zhelnin, P., 2023, In: Astrophysical Journal Letters. 945, 1, 11 p., L8.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Schizosaccharomyces pombe Mms1 channels repair of perturbed replication into Rhp51 independent homologous recombination
Vejrup-Hansen, R., Mizuno, K., Miyabe, I., Fleck, O., Holmberg, Christian, Murray, J. M., Carr, A. M. & Nielsen, Olaf, 2011, In: DNA Repair. 10, 3, p. 283-95 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
SUMOylation of Rad52-Rad59 synergistically change the outcome of mitotic recombination
Pinela da Silva, S. C., Altmannova, V., Eckert-Boulet, N. V., Kolesar, P., Gallina, I., Hang, L., Chun, I., Arneric, M., Zhao, X., Buron, L. D., Mortensen, U. H., Krejci, L. & Lisby, Michael, 2016, In: D N A Repair. 42, p. 11-25 15 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
SUMO-dependent relocalization of eroded telomeres to nuclear pore complexes controls telomere recombination
Churikov, D., Charifi, F., Eckert-Boulet, N. V., Pinela da Silva, S. C., Simon, M., Lisby, Michael & Géli, V., 2016, In: Cell Reports. 15, 6, p. 1242-1253 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
STSV2 as a Model Crenarchaeal Virus for Studying Virus-Host Interactions and CRISPR-Cas Adaptive Immunity
León Sobrino, C., 2015, Department of Biology, Faculty of Science, University of Copenhagen. 159 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
STAT3 induces transcription of the DNA methyltransferase 1 gene (DNMT1) in malignant T lymphocytes
Zhang, Q., Wang, H. Y., Woetmann, Anders , Raghunath, P. N., Ødum, Niels & Wasik, M. A., 2006, In: Blood. 108, 3, p. 1058-64 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
SMV1, an extremely stable thermophilic virus platform for nanoparticle trafficking in the mammalian GI tract
Uldahl, K. B., Walk, S. T., Olshefsky, S. C., Young, M. J. & Peng, Xu, Nov 2017, In: Journal of Applied Microbiology. 123, 5, p. 1286-1297 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
SMV1 virus-induced CRISPR spacer acquisition from the conjugative plasmid pMGB1 in Sulfolobus solfataricus P2
Erdmann, S., Shah, S. A. & Garrett, Roger Antony, 2013, In: Biochemical Society Transactions. 41, 6, p. 1449-1458 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
SLING: a tool to search for linked genes in bacterial datasets
Horesh, G., Harms, A., Fino, C., Parts, L., Gerdes, K., Heinz, E. & Thomson, N. R., 2018, In: Nucleic Acids Research. 46, 21, p. 1-10 e128.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
SHP2 regulates IL-2 induced MAPK activation, but not Stat3 or Stat5 tyrosine phosphorylation, in cutaneous T cell lymphoma cells
Lundin Brockdorff, J., Woetmann, Anders , Mustelin, T., Kaltoft, K., Zhang, Q., Wasik, M. A., Röpke, C. & Ødum, Niels, 2002, In: Cytokine. 20, 4, p. 141-7 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
SCAI promotes error-free repair of DNA interstrand crosslinks via the Fanconi anemia pathway
Schubert, Lisa, Hendriks, Ivo Alexander, Hertz, Emil Peter Thrane, Wu, Wei, Sellés Baiget, Selene, Hoffmann, Saskia, Bagge, Keerthana Stine Viswalingam, Gallina, I., Pentakota, S., Benedict, Bente, Johansen, Joachim, Apelt, K., Luijsterburg, M. S., Rasmussen, Simon, Lisby, Michael, Liu, Ying, Nielsen, Michael Lund, Mailand, Niels & Duxin, Julien, 2022, In: EMBO Reports. 23, 4, 20 p., e53639.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Role of autophagy in disease resistance and hypersensitive response-associated cell death
Hofius, D., Munch, D., Bressendorff, Simon, Mundy, J. & Petersen, Morten, 2011, In: Cell Death and Differentiation. 18, 8, p. 1257-1262 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Ribosome-dependent Vibrio cholerae mRNAse HigB2 is regulated by a β-strand sliding mechanism
Hadži, S., Garcia-Pino, A., Haesaerts, S., Jurėnas, D., Gerdes, K., Lah, J. & Loris, R., 5 May 2017, In: Nucleic Acids Research. 45, 8, p. 4972-4983 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Ribosome Hibernation
Prossliner, T., Winther, K. S., Sørensen, Michael Askvad & Gerdes, K., 2018, In: Annual Review of Genetics. 52, p. 321-348
Research output: Contribution to journal › Review › Research › peer-review
Published
Ribose 5-phosphate: the key metabolite bridging the metabolisms of nucleotides and amino acids during stringent response in Escherichia coli?
Grucela, Paulina Katarzyna, Fuhrer, T., Sauer, U., Chao, Y. & Zhang, Yong, 2023, In: Microbial Cell. 10, 7, p. 141-144
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Rfam: updates to the RNA families database
Gardner, P. P., Daub, J., Tate, J. G., Nawrocki, E. P., Kolbe, D. L., Lindgreen, S., Wilkinson, A. C., Finn, R. D., Griffiths-Jones, S., Eddy, S. R. & Bateman, A., 2008, In: Nucleic Acids Research.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Revised sequence of foxtail mosaic virus reveals a triple gene block structure similar to potato virus X
Bruun-Rasmussen, M., Madsen, C. T., Johansen, E. & Albrechtsen, M., 2008, In: Archives of Virology. 153, 1, p. 223-226
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Revised fission yeast gene and allele nomenclature guidelines for machine readability
Lera-ramírez, M., Bähler, J., Mata, J., Rutherford, K., Hoffman, C. S., Lambert, S., Oliferenko, S., Martin, S. G., Gould, K. L., Du, L., Sabatinos, S. A., Forsburg, S. L., Nielsen, Olaf, Nurse, P. & Wood, V., 2023, In: Genetics. 225, 3, 10 p., iyad143.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Reverse gyrase functions in genome integrity maintenance by protecting DNA breaks in vivo
Han, W., Feng, X. & She, Q., Jul 2017, In: International Journal of Molecular Sciences. 18, 7, 13 p., 1340.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Revealing the essentiality of multiple archaeal pcna genes using a mutant propagation assay based on an improved knockout method
Zhang, C., Guo, L., Deng, L., Wu, Y., Liang, Y., Huang, L. & She, Q., Nov 2010, In: Microbiology. 156, Part 11
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Retromer contributes to immunity-associated cell death in Arabidopsis
Munch, D., Teh, O., Malinovsky, F. G., Liu, Q., Vetukuri, R. R., El Kasmi, F., Brodersen, Peter, Hara-Nishimura, I., Dangl, J. L., Petersen, Morten, Mundy, J. & Hofius, D., 2015, In: Plant Cell. 27, 2, p. 463-479 17 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Response to Comment by Poinar et al. on "DNA from Pre-Clovis Human Coprolites in Oregon, North America"
Gilbert, M Thomas P, Jenkins, D., Higham, T., Rasmussen, M., Malmstrom, H., Svensson, E., Sanchez, J., Cummings, L., Yohe, I. R., Hofreiter, M., Götherström, A. & Willerslev, Eske, 2009, In: Science. 325, 5937, p. 148 1 p.
Research output: Contribution to journal › Comment/debate › Research
Published
Response to Comment by Goldberg et al. on "DNA from Pre-Clovis Human Coprolites in Oregon, North America"
Rasmussen, M., Cummings, L., Gilbert, M Thomas P, Bryant, V., Smith, C., Jenkins, D. & Willerslev, Eske, 2009, In: Science. 325, p. 148 1 p.
Research output: Contribution to journal › Comment/debate › Research
Published
Residues Within the N-terminal Domain of Human Topoisomerase I Play a Direct Role in Relaxation
Lisby, Michael, Olesen, J. R., Skouboe, C., Krogh, B. O., Straub, T., Boege, F., Velmurugan, S., Martensen, P. M., Andersen, A. H., Jayaram, M., Westergaard, O. & Knudsen, B. R., 8 Jun 2001, In: Journal of Biological Chemistry. 276, 23, p. 20220-20227 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Repression of a mating type cassette in the fission yeast by four DNA elements
Ekwall, K., Nielsen, O., Ruusala, T. & Nielsen, Olaf, 1 Oct 1991, In: Yeast. 7, 7, p. 745-55 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Repression of RNA polymerase by the archaeo-viral regulator ORF145/RIP
Sheppard, C., Blombach, F., Belsom, A., Schulz, S., Daviter, T., Smollett, K., Mahieu, E., Erdmann, S., Tinnefeld, P., Garrett, Roger Antony, Grohmann, D., Rappsilber, J. & Werner, F., 2016, In: Nature Communications. 7, 13 p., 13595.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Replication Protein Rep Provides Selective Advantage to Viruses in the Presence of CRISPR-Cas Immunity
Zhang, W., Bhoobalan-Chitty, Y., Zhai, Xichuan, Hui, Y., Hansen, Lars Hestbjerg, Deng, Ling & Peng, Xu, 2023, In: CRISPR Journal. 6, 1, p. 32-42
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Replication Fork Breakage and Restart in Escherichia coli
Michel, B., Sinha, A. K. & Leach, D. R. F., 2018, In: Microbiology and Molecular Biology Reviews. 82, 3, 19 p., e00013-18.
Research output: Contribution to journal › Review › Research › peer-review
Published
Replication: DNA Building Block Synthesis On Demand
Holmberg, Christian & Nielsen, Olaf, 2012, In: Current Biology. 22, 8, p. R271-R272 2 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Remotely controlled fusion of selected vesicles and living cells
Bahadori, Azra, Rørvig-Lund, A., Semsey, S., Oddershede, L. B. & Bendix, Poul Martin, 15 Dec 2017, In: Proceedings of SPIE. 9922, p. 992211-1
Research output: Contribution to journal › Conference article › Research › peer-review
Published
Relationships between fuselloviruses infecting the extremely thermophilic archaeon Sulfolobus: SSV1 and SSV2
Stedman, K. M., She, Q., Phan, H., Arnold, H. P., Holz, I., Garrett, Roger Antony & Zillig, W., 2003, In: Research in Microbiology. 154, 4, p. 295-302 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Regulatory sequence-based discovery of anti-defense genes in archaeal viruses
Bhoobalan, Yuvaraj, Xu, Shuanshuan, Martinez Alvarez, Laura, Karamycheva, S., Makarova, K. S., Koonin, E. V. & Peng, Xu, 2024, In: Nature Communications. 15, 1, 13 p., 3699.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Regulation of the Anti-Viral Immune System CRISPR in Sulfolobus and Development of a Genetic Tool for the Linear Sulfolobus Rudivirus SIRV2
He, F., 2015, Department of Biology, Faculty of Science, University of Copenhagen. 101 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
Regulation of telomere metabolism by the RNA processing protein Xrn1
Cesena, D., Cassani, C., Rizzo, E., Lisby, Michael, Bonetti, D. & Longhese, M. P., 20 Apr 2017, In: Nucleic Acids Research. 45, 7, p. 3860-3874 15 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Regulation of ribonucleotide reductase by Spd1 involves multiple mechanisms
Nestoras, K., Mohammed, A. H., Schreurs, A., Fleck, O., Watson, A. T., Poitelea, M., O'Shea, Charlotte, Chahwan, C., Holmberg, Christian, Kragelund, Birthe Brandt, Nielsen, Olaf, Osborne, M., Carr, A. M. & Liu, C., 1 Jun 2010, In: Genes & Development. 24, 11, p. 1145-1159 15 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Regulation of rDNA stability by sumoylation
Eckert-Boulet, N. & Lisby, Michael, 2009, In: DNA Repair. 8, 4, p. 507-16 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Regulation of homologous recombination at telomeres in budding yeast
Eckert-Boulet, N. & Lisby, Michael, 10 Sep 2010, In: F E B S Letters. 584, 17, p. 3696-3702 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Regulation of basal resistance by a powdery mildew-induced cysteine-rich receptor-like protein kinase in barley
Rayapuram, C., Jensen, M. K., Maiser, F., Vikgren, E. L. J., Jensen, H. H., Rung, J. H., Gregersen, P. L., Schweizer, P., Collinge, David B. & Lyngkjær, M. F., 2012, In: Molecular Plant Pathology. 13, 2, p. 135-147 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Regulation of Ribonucleotide Reductase and Screening for Species-Specific Inhibitors in Fission Yeast
Løvschal, K. V., 2019, Department of Biology, Faculty of Science, University of Copenhagen.
Research output: Book/Report › Ph.D. thesis › Research
Published
Regulation of Homologous Recombination by SUMOylation: SUMO, DNA Repair and New Insights into Telomere Maintenance
Pinela da Silva, S. C., 2014, Department of Biology, Faculty of Science, University of Copenhagen. 211 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
Regulation of Hed1 and Rad54 binding during maturation of the meiosis-specific presynaptic complex
Crickard, J. B., Kaniecki, K., Kwon, Y., Sung, P., Lisby, Michael & Greene, E. C., 2018, In: EMBO Journal. 37, 7, 17 p., e98728.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Regulation of DNA replication in Escherichia coli
Boye, E., Lyngstadaas, A., Løbner-Olesen, Anders, Skarstad, K. & Wold, S., 1992, 43 Colloquium Mosbach. Springer Verlag, p. 15-26
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
Published
Regulation of Burkholderia cenocepacia biofilm formation by RpoN and the c-di-GMP effector BerB
Fazli, M., Rybtke, Morten Levin, Steiner, E., Weidel, E., Berthelsen, J., Groizeleau, J. D. D., Bin, W., Zhi, B. Z., Yaming, Z., Kaever, V., Givskov, Michael, Hartmann, R. W., Eberl, L. & Tolker-Nielsen, Tim, 2017, In: MicrobiologyOpen. 6, 4, 13 p., e00480.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Regulation of BRCA2 by the Protein Phosphatase 2A
Ambjørn, Sara Marie, 2019, Department of Biology, Faculty of Science, University of Copenhagen.
Research output: Book/Report › Ph.D. thesis › Research
Published
Regulation of ARF7 in Arabidopsis thaliana during lateral root formation and pluripotency acquisition
Ebstrup, E. N., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 102 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
Regulating retrotransposon activity through the use of alternative transcription start sites
Persson, J., Steglich, B., Smialowska, A., Boyd, M., Lange, Jette Bornholdt, Andersson, Robin, Schurra, C., Arcangioli, B., Sandelin, Albin Gustav, Nielsen, Olaf & Ekwall, K., 2016, In: E M B O Reports. 17, 5, p. 753-768 16 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Recombinational DNA repair is regulated by compartmentalization of DNA lesions at the nuclear pore complex
Géli, V. & Lisby, Michael, 2015, In: BioEssays. 37, 12, p. 1287-1292 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Recognition of extremophilic archaeal viruses by eukaryotic cells: a promising nanoplatform from the third domain of life
Uldahl, K. B., Wu, L., Hall, A., Papathanasiou, P., Peng, Xu & Moghimi, S. M., 2016, In: Scientific Reports. 6, 37966.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Receptor-like kinase complexes in plant innate immunity
Greeff, M. C., Roux, M. E., Mundy, J. & Petersen, Morten, 2012, In: Frontiers in Plant Science. 3, 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse
Orlando, L. A. A., Ginolhac, A., Zhang, G., Froese, D., Albrechtsen, A., Stiller, M., Schubert, M., Cappellini, E., Petersen, B., Moltke, I., Johnson, P. L. F., Fumagalli, M., Mouatt, J. T. V., Raghavan, M., Korneliussen, T. S., Malaspinas, A. S., Vogt, J., Szklarczyk, D. M., Kelstrup, C., Vinther, J. & 36 others, Dolocan, A., Stenderup, Jesper Tandberg, Velazquez, A. M. V., Cahill, J., Rasmussen, M., Wang, X., Min, J., Zazula, G. D., Seguin-Orlando, A., Mortensen, C., Magnussen, K., Thompson, J. F., Weinstock, J., Gregersen, K., Røed, K. H., Eisenmann, V., Rubin, C. J., Miller, D. C., Antczak, D. F., Bertelsen, M. F., Brunak, S., Al-Rasheid, K. A. S., Ryder, O., Andersson, L., Mundy, J., Krogh, Anders, Gilbert, M Thomas P, Kjær, Kurt H., Sicheritz-Pontén, T., Jensen, Lars Juhl, Olsen, Jesper Velgaard, Hofreiter, M., Nielsen, R., Shapiro, B., Wang, J. & Willerslev, Eske, 4 Jul 2013, In: Nature. 499, 7456, p. 74-78 5 p.
Research output: Contribution to journal › Letter › Research › peer-review
Published
Reading Prokaryotic Genomes
Iversen, P., 2008, Biologisk Institut: Museum Tusculanum. 168 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
Re-wiring of energy metabolism promotes viability during hyperreplication stress in E. coli
Charbon, Godefroid, Campion, C., Chan, S. H. J., Bjørn, L., Weimann, A., da Silva, L. C. N., Jensen, P. R. & Løbner-Olesen, Anders, 27 Jan 2017, In: PLoS Genetics. 13, 1, 26 p., e1006590.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Rdh54 stabilizes Rad51 at displacement loop intermediates to regulate genetic exchange between chromosomes
Keymakh, M., Dau, J., Hu, J., Ferlez, B., Lisby, Michael & Brooks Crickard, J., 2022, In: PLOS Genetics. 18, 9, 26 p., e1010412.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Rapid selection of Plasmodium falciparum chloroquine resistance transporter gene and multidrug resistance gene-1 haplotypes associated with past chloroquine and present artemether-lumefantrine use in Inhambane District, southern Mozambique
Thomsen, T. T., Madsen, L. B., Hansson, Helle Smedegaard, Tomás, E. V. E., Charlwood, D., Bygbjerg, Ib Christian & Alifrangis, Michael, Mar 2013, In: American Journal of Tropical Medicine and Hygiene. 88, 3, p. 536-41 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Rapid Curtailing of the Stringent Response by Toxin-Antitoxin Encoded mRNases
Tian, C., Roghanian, Mohammad, Jørgensen, M. G., Sneppen, Kim, Sørensen, Michael Askvad, Gerdes, K. & Mitarai, Namiko, Jul 2016, In: Journal of Bacteriology. 198, 14, p. 1918-1926
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Rad52 multimerization is important for its nuclear localization in Saccharomyces cerevisiae.
Plate, I., Albertsen, L., Lisby, Michael, Hallwyl, S. C. L., Feng, Q., Seong, C., Rothstein, R., Sung, P. & Mortensen, U. H., 2007, In: DNA Repair. 7, 1, p. 57-66 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Rad52 forms DNA repair and recombination centers during S phase
Lisby, Michael, Rothstein, R. & Mortensen, U. H., 17 Jul 2001, In: Proceedings of the National Academy of Sciences of the United States of America. 98, 15, p. 8276-8282 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Rad52 and Rad59 exhibit both overlapping and distinct functions
Feng, Q., Düring, L., Mayolo, A. A. D., Lettier, G., Lisby, Michael, Erdeniz, N., Mortensen, U. H. & Rothstein, R., 2007, In: DNA Repair. 6, 1, p. 27-37
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Rad52 and Rad59 exhibit both overlapping and distinct functions
Feng, Q., Düring, L., de Mayolo, A. A., Buchhorn, G. L., Lisby, Michael, Erdeniz, N., Mortensen, U. H. & Rothstein, R., 2007, In: DNA Repair. 6, 1, p. 27-37 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Rad52 SUMOylation functions as a molecular switch that determines a balance between the Rad5- and Rad59-dependent survivors
Charifi, F., Churikov, D., Eckert-Boulet, N., Minguet, C., Jourquin, F., Hardy, J., Lisby, Michael, Simon, M. N. & Géli, V., 2021, In: iScience. 24, 3, 26 p., 102231.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Rad52 SUMOylation affects the efficiency of the DNA repair: [Inkl. Corrigendum]
Altmannova, V., Eckert-Boulet, N., Arneric, M., Kolesar, P., Chaloupkova, R., Damborsky, J., Sung, P., Zhao, X., Lisby, Michael & Krejci, L., 2010, In: Nucleic Acids Research. 38, 14, p. 4708-4721 14 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Rad52
Mortensen, U. H., Lisby, Michael & Rothstein, R., 2009, In: Current Biology. 19, 16, p. R676-7
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Rad10 exhibits lesion-dependent genetic requirements for recruitment to DNA double-strand breaks in Saccharomyces cerevisiae
Moore, D. M., Karlin, J., González-Barrera, S., Mardiros, A., Lisby, Michael, Doughty, A., Gilley, J., Rothstein, R., Friedberg, E. C. & Fischhaber, P. L., 2009, In: Nucleic Acids Research. 37, 19, p. 6429-38 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
RSK is a principal effector of the RAS-ERK pathway for eliciting a coordinate promotile/invasive gene program and phenotype in epithelial cells
Doehn, U., Hauge, C., Frank, S. R., Jensen, C. A. J., Duda, K., Nielsen, J. V., Cohen, M. S., Johansen, Jens Vilstrup, Winther, B. R., Lund, L. R., Winther, Ole, Taunton, J., Hansen, S. H. & Frödin, Morten, 2009, In: Molecular Cell. 35, 4, p. 511-22 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
RPA coordinates DNA end resection and prevents formation of DNA hairpins
Chen, H., Lisby, Michael & Symington, L. S., 2013, In: Molecular Cell. 50, 4, p. 589-600 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
RNF8 and RNF168 but not HERC2 are required for DNA damage-induced ubiquitylation in chicken DT40 cells
Østergaard, Vibe Hallundbæk, Pentzold, C., Pedersen, R. T., Iosif, S., Alpi, A., Bekker-Jensen, Simon Holst, Mailand, Niels & Lisby, Michael, 2012, In: D N A Repair. 11, 11, p. 892–905 14 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
RNAi screening for characterisation of ER-associated degradation pathways in mammalian cells
Månsson, M. D. J., 2013, Department of Biology, Faculty of Science, University of Copenhagen.
Research output: Book/Report › Ph.D. thesis › Research
Published
RNAi and heterochromatin repress centromeric meiotic recombination
Ellermeier, C., Higuchi, E. C., Phadnis, N., Holm, L., Geelhood, J. L., Thon, Genevieve & Smith, G. R., 11 May 2010, In: Proceedings of the National Academy of Sciences USA (PNAS). 107, 19, p. 8701-5 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
RNA-binding IMPs promote cell adhesion and invadopodia formation.
Vikesaa, J., Hansen, T. V. O., Jønson, L., Borup, R., Wewer, Ulla M., Christiansen, Jan & Nielsen, Finn Cilius, 2006, In: EMBO Journal. 25, 7, p. 1456-68 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
RAD18-independent ubiquitination of proliferating-cell nuclear antigen in the avian cell line DT40
Simpson, L. J., Ross, A. L., Szüts, D., Alviani, C. A., Østergaard, Vibe Hallundbæk, Patel, K. J. & Sale, J. E., 1 Sep 2006, In: EMBO Reports. 7, 9, p. 927-932 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Quantitative sensing and signalling of single-stranded DNA during the DNA damage response
Bantele, S. C. S., Lisby, Michael & Pfander, B., 2019, In: Nature Communications. 10, p. 1-12 944.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Quantitative regulation of alternative splicing in evolution and development
Irimia, M., Rukov, J. L., Roy, S. W., Vinther, Jeppe & Garcia-Fernandez, J., 2009, In: BioEssays. 31, 1, p. 40-50 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Quantitative analysis of promoter architecture and gene regulation
Marstrand, T. T., 2009, Biologisk Institut: Museum Tusculanum. 33 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
Purification and characterization of two forms of I-DmoI, a thermophilic site-specific endonucleose encoded by an archaeal intron
Dalgaard, J., Garrett, Roger Antony & Belfort, M., 1994, In: Journal of Biological Chemistry. Vol 269, p. 28885-28892
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Protospacer recognition motifs: Mixed identities and functional diversity
Shah, S. A., Erdmann, S., Mojica, F. J. M. & Garrett, Roger Antony, 2013, In: R N A Biology. 10, 5, p. 1-9 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Protocol for Purification of Human ZGRF1 and Its Regulatory Function on RAD51-Mediated D-Loop Formation
Lisby, Michael & Xue, X., 2020, In: STAR Protocols. 1, 2
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae
Henriksen, P., Wagner, S. A., Weinert, B. T., Sharma, S., Bacinskaja, G., Rehman, M., Juffer, A. H., Walther, T. C., Lisby, Michael & Choudhary, Chunaram, 2012, In: Molecular & Cellular Proteomics. 11, 11, p. 1510-1522 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Proteins involved in attack and defence in Zygomycete-aphid interactions
Grell, M. N., Jensen, Annette Bruun & Lange, L., 2009.
Research output: Contribution to conference › Conference abstract for conference › Research
Published
Protein-coding introns from the 23S rRNA-encoding gene form stable circles in the hyperthermophilic archaeon Pyrobaculum organotrophum
Dalgaard, J. & Garrett, Roger Antony, 1992, In: Gene. 121, p. 103-110
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Protein structure validation and refinement using amide proton chemical shifts derived from quantum mechanics
Christensen, A. S., Linnet, T. E., Borg, M., Boomsma, Wouter, Lindorff-Larsen, Kresten, Hamelryck, Thomas Wim & Jensen, Jan Halborg, 2013, In: PLoS ONE. 8, 12, 10 p., e84123.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Protein phosphatase 2A (PP2A) regulates interleukin-4-mediated STAT6 signaling
Woetmann, Anders , Brockdorff, J., Lovato, P., Nielsen, M., Leick, V., Rieneck, K., Svejgaard, A., Geisler, Carsten & Ødum, Niels, 2002, In: Journal of Biological Chemistry. 278, 5, p. 2787-91 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Protein domain-dependent vesiculation of Lipoprotein A, a protein that is important in cell wall synthesis and fitness of the human respiratory pathogen Haemophilus influenzae
Jalalvand, F., Su, Y., Manat, G., Chernobrovkin, A., Kadari, M., Jonsson, S., Janousková, M., Rutishauser, D., Semsey, S., Løbner-Olesen, Anders, Sandblad, L., Flärdh, K., Mengin-Lecreulx, D., Zubarev, R. A. & Riesbeck, K., 2022, In: Frontiers in Cellular and Infection Microbiology. 12, 17 p., 984955.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Protein dielectric constants determined from NMR chemical shift perturbations
Kukic, P., Farrell, D., McIntosh, L. P., García-Moreno E., B., Jensen, K. S., Toleikis, Z., Teilum, Kaare & Nielsen, J. E., 2013, In: Journal of the American Chemical Society. 135, 45, p. 16968–16976 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Protein Structure Prediction Using Bee Colony Optimization Metaheuristic: Extended Abstract
Fonseca, R., Paluszewski, M. & Winter, Pawel, 2008, In: Koebenhavns Universitet. Datalogisk Institut. Rapport. 12, 11 p.
Research output: Contribution to journal › Conference abstract in journal › Research
Published
Protein Kinase Signalling in the Moss Physcomitrella patens
Azevedo de Silva, R., 2016, Department of Biology, Faculty of Science, University of Copenhagen. 109 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
Protein Decoy Generation Using Branch and Bound with Efficient Bounding
Paluszewski, M. & Winter, Pawel, 2008, Algorithms in Bioinformatics: 8th International Workshop, WABI 2008, Karlsruhe, Germany, September 15-19, 2008, Proceedings. Crandall, K. A. & Lagergren, J. (eds.). Springer, p. 382-393 12 p. (Lecture Notes in Computer Science : Lecture Notes in Bioinformatics; No. 5251).
Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
Published
Prophages and growth dynamics confound experimental results with antibiotic-tolerant persister cells
Harms, A., Fino, C., Sørensen, Michael Askvad, Semsey, S. & Gerdes, K., 12 Dec 2017, In: mBio. 8, 6, 18 p., e01964-17.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Prophage-Related Gene VpaChn25_0724 Contributes to Cell Membrane Integrity and Growth of Vibrio parahaemolyticus CHN25
Yang, L., Wang, Y., Yu, P., Ren, S., Zhu, Z., Jin, Y., Yan, J., Peng, Xu & Chen, L., 2020, In: Frontiers in Cellular and Infection Microbiology. 10, 18 p., 595709.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Pro-recombination role of Srs2 protein requires SUMO (small ubiquitin-like modifier) but is independent of PCNA (proliferating cell nuclear antigen) interaction
Kolesar, P., Altmannova, V., Pinela da Silva, S. C., Lisby, Michael & Krejci, L., 2016, In: Journal of Biological Chemistry. 291, 14, p. 7594-7607 14 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Prediction of regulatory elements
Sandelin, Albin Gustav, 2008, In: Methods in Molecular Biology. 453, p. 233-44 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Prediction of fat oxidation capacity using ¹H-NMR and LC-MS lipid metabolomic data combined with phenotypic data
Pers, T. H., Martin, F. P., Verdich, C., Holst, C., Johansen, Jens Vilstrup, Astrup, A., Polak, J., Martinez, J. A., Rezzi, S., Blaak, E. E., Saris, W. H. M., Kochhar, S., Macdonald, I. A., Sørensen, T. I. A. & Ramadan, Z., 2008, In: Chemometrics and Intelligent Laboratory Systems. 93, 1, p. 34-42 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Predicted highly derived class 1 CRISPR-Cas system in Haloarchaea containing diverged Cas5 and Cas7 homologs but no CRISPR array
Makarova, K. S., Karamycheva, S., Shah, S. A., Vestergaard, G. A., Garrett, Roger Antony & Koonin, E. V., 2019, In: FEMS Microbiology Letters. 366, 7, 5 p., fnz079.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Posttranscriptional crossregulation between Drosha and DGCR8
Han, J., Pedersen, Jakob Skou, Kwon, S. C., Belair, C. D., Kim, Y., Yeom, K., Yang, W., Haussler, D., Blelloch, R. & Kim, V. N., 2009, In: Cell. 136, 1, p. 75-84 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Population structure of the African savannah elephant inferred from mitochondrial control region sequences and nuclear microsatellite loci
Nyakaana, S., Arctander, P. & Siegismund, Hans Redlef, 2002, In: Heredity. 89, 2, p. 90-8 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Population structure of African buffalo inferred from mtDNA sequences and microsatellite loci: high variation but low differentiation
Simonsen, Bo Thisted, Siegismund, Hans Redlef & Arctander, P., 1998, In: Molecular Ecology. 7, 2, p. 225-37 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Population genetics of Kenyan impalas–consequences for conservation
Arctander, P., Kat, P. W., Aman, R. A. & Siegismund, Hans Redlef, 1996, Molecular Genetic Approaches in Conservation. Smith, T. B. & Wayne, R. K. (eds.). Oxford: Oxford University Press, p. 399-412
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
Published
Population genetic structure of the common warthog (Phacochoerus africanus) in Uganda: evidence for a strong philopatry among warthogs and social structure breakdown in a disturbed population
Muwanka, V. B., Nyakaana, S., Siegismund, Hans Redlef & Arctander, P., 2007, In: African Journal of Ecology. 45, 1, p. 22-30
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Population genetic structure of savannah elephants in Kenya: conservation and management implications
Okello, J. B. A., Masembe, C., Rasmussen, H. B., Wittemyer, G., Omondi, P., Kahindi, O., Muwanika, V. B., Arctander, P., Douglas-Hamilton, I., Nyakaana, S. & Siegismund, Hans Redlef, 2008, In: Journal of Heredity. 99, 5, p. 443-452 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Polypeptides comprising an ice-binding activity
Ramløv, H., Wilkens, C. & Løbner-Olesen, Anders, 2009, Patent No. WO/2009/065415
Research output: Patent
Published
Plants flex their skeletons.
Foster, R., Mattsson, O. & Mundy, J., 2003, In: Trends in Plant Science. 8, 5, p. 202-4 2 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Plant autoimmunity - fresh insights into an old phenomenon
Freh, M., Gao, Jinlan, Petersen, Morten & Panstruga, R., 2022, In: Plant Physiology. 188, 3, p. 1419-1434 16 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Physical mapping and cloning of RAD56
Mathiasen, D. P., Gallina, I., Germann, S. M., Hamou, W., Eléouët, M., Thodberg, S., Eckert-Boulet, N., Game, J. & Lisby, Michael, 25 Apr 2013, In: Gene. 519, 1, p. 182-186 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Phylogeography, hybridization and Pleistocene refugia of the kob antelope (Kobus kob)
Lorenzen, E. D., De Neergaard, R., Arctander, P. & Siegismund, Hans Redlef, 2007, In: Molecular Ecology. 16, 15, p. 3241-52 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Phylogenomics Provides New Insights into Gains and Losses of Selenoproteins among Archaeplastida
Liang, H., Wei, T., Xu, Y., Li, L., Sahu, S. K., Wang, H., Li, H., Fu, X., Zhang, G., Melkonian, M., Liu, X., Wang, S. & Liu, Huan, 2019, In: International Journal of Molecular Sciences (Online). 20, 12, 14 p., 3020.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Phylogenetic relationships amongst the hyperthermophilic archae determined from partial 23S rRNA gene sequences
Kjems, J., Larsen, N., Dalgaard, J., Garrett, Roger Antony & Stetter, K. O., 1992, In: Systematic and Applied Microbiology. 15, p. 203-208
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Phosphatidylserine stimulates ceramide 1-phosphate (C1P) intermembrane transfer by C1P transfer proteins
Zhai, X., Gao, Y., Mishra, S. K., Simanshu, D. K., Boldyrev, I. A., Benson, L. M., Bergen III, H. R., Malinina, L., Mundy, J., Molotkovsky, J. G., Patel, D. J. & Brown, R. E., 10 Feb 2017, In: Journal of Biological Chemistry. 292, 6, p. 2531-2541 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Pheromone communication in the fission yeast Schizosaccharomyces pombe
Nielsen, O., Davey, W. J. & Nielsen, Olaf, 1 Apr 1995, In: Seminars in Cell Biology. 6, 2, p. 95-104 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Phenylbutyrate inhibits homologous recombination induced by camptothecin and methyl methanesulfonate
Kaiser, G. S., Germann, S. M., Westergaard, T. & Lisby, Michael, 2011, In: Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis. 713, 1-2, p. 64-75 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Phenotypic, proteomic, and genomic characterization of a putative ABC-transporter permease involved in Listeria monocytogenes biofilm formation
Zhu, X., Liu, W., Lametsch, Rene, Aarestrup, F. M., Shi, C., She, Q., Shi, X. & Knoechel, Susanne, 2011, In: Foodborne Pathogens and Disease. 8, 4, p. 495-501 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Persistent Organic Pollutant Exposure Leads to Insulin Resistance Syndrome
Ruzzin, J., Petersen, R., Meugnier, E., Madsen, L., Lock, E., Lillefosse, H., Ma, T., Pesenti, S., Sonne, Si Brask, Marstrand, T. T., Malde, M. K., Du, Z., Chavey, C., Fajas, L., Lundebye, A., Brand, C. L., Vidal, H., Kristiansen, Karsten & Frøyland, L., 2010, In: Environmental Health Perspectives. 118, 4, p. 465-71
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Peptide-nucleotide antibiotic Microcin C is a potent inducer of stringent response and persistence in both sensitive and producing cells
Piskunova, J., Maisonneuve, E., Germain-Maisonneuve, E., Gerdes, K. & Severinov, K., May 2017, In: Molecular Microbiology. 104, 3, p. 463-471 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
PasT of Escherichia coli sustains antibiotic tolerance and aerobic respiration as a bacterial homolog of mitochondrial Coq10
Fino, C., Vestergaard, M., Ingmer, Hanne, Pierrel, F., Gerdes, K. & Harms, A., 2020, In: MicrobiologyOpen. 9, 8, 36 p., e1064.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
PICH deficiency limits the progression of MYC-induced B-cell lymphoma
Castejón-Griñán, M., Albers, E., Simón-Carrasco, L., Aguilera, P., Sbroggio, M., Pladevall Morera, David, Ingham, Andreas, Lim, Ernest Wee Kiat, Guillen-Benitez, A., Pietrini, E., Lisby, Michael, Hickson, Ian David & Lopez-Contreras, Andres, 2024, In: Blood Cancer Journal. 14, 1, 15 p., 16.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
PAT mRNA decapping factors are required for proper development in Arabidopsis
Zuo, Zhangli Thomsen, Roux, M. E., Dagdas, Y. F., Rodriguez, Eleazar & Petersen, Morten, 2024, In: FEBS Letters. 598, 9, p. 1008-1021 14 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Oxidative DNA damage is instrumental in hyperreplication stress-induced inviability of Escherichia coli
Charbon, Godefroid, Bjørn, L., Mendoza-Chamizo, B., Frimodt-Møller, Jakob & Løbner-Olesen, Anders, 2014, In: Nucleic Acids Research. 42, 21, p. 13228-13241 14 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Overproduction of DnaA protein stimulates initiation of chromosome and minichromosome replication in Escherichia coli
Atlung, T., Løbner-Olesen, Anders & Hansen, F. G., Jan 1987, In: Molecular General Genetics. 206, 1, p. 51-9 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Overexpression of putative NADH oxidases from the hyperthermophilic archaeons Sulfolobus solfataricus and Pyrococcus horikoshii
Crane III, E. J., Ward, D. E., van der Oost, J., She, Q. & Garrett, Roger Antony, 1999, Flavins and Flavoproteins 1999 (Ghisla, S., Kroneck, P., Macheroux, P., and Sund, H. ed.). Berlin, p. 281-284 4 p.
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
Published
Overexpression of ATG8/LC3 enhances wound-induced somatic reprogramming in Physcomitrium patens
Kanne, J. V., Ishikawa, M., Bressendorff, Simon, Ansbøl, Jeppe, Hasebe, M., Rodriguez, Eleazar & Petersen, Morten, 2022, In: Autophagy. 18, 6, p. 1463-1466 4 p.
Research output: Contribution to journal › Comment/debate › Research › peer-review
Published
Origins of the many NPY-family receptors in mammals
Larhammar, D., Wraith, A., Berglund, M. M., Holmberg, Steen & Lundell, I., 2001, In: Peptides. 22, 3, p. 295-307 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Origins and emergent evolution of life: the colloid microsphere hypothesis revisited
Egel, Richard, 2014, In: Origins of Life and Evolution of Biospheres. 44, 2, p. 87-110 24 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Origins: It takes a well rooted trunk to bear a tree - reductionist models of divergent evolution and further aspects of reality
Egel, Richard, 2020, Untangling Molecular Biodiversity: Explaining Unity and Diversity Principles of Organization with Molecular Structure and Evolutionary Genomics. Caetano-Anollés, G. (ed.). World Scientific, p. 223-282 60 p.
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
Published
Origin of introns by 'intronization' of exonic sequences.
Irimia, M., Rukov, J. L., Penny, D., Vinther, Jeppe, Garcia-Fernandez, J. & Roy, S. W., 2008, In: Trends in Genetics.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Organization and expression of genes in the genomic region surrounding the glutamine synthetase gene Gln1 from Lotus japonicus
Thykjaer, T., Danielsen, D., She, Q. & Stougaard, J., 1997, In: Molecular Genetics and Genomics. 255, 6, p. 628-36 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Order by disorder in plant signaling
Kragelund, Birthe Brandt, Jensen, M. K. & Skriver, Karen, 2012, In: Trends in Plant Science. 17, 11, p. 625-632 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Optimization of ordered plasmid assembly by gap repair in Saccharomyces cerevisiae
Eckert-Boulet, N. V., Pedersen, M. L., Krogh, B. O. & Lisby, Michael, 2012, In: Yeast. 29, 8, p. 323-334 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Once in a lifetime: strategies for preventing re-replication in prokaryotic and eukaryotic cells.
Nielsen, Olaf & Løbner-Olesen, Anders, 2008, In: EMBO Reports. 9, 2, p. 151-156 5 p.
Research output: Contribution to journal › Review › Research › peer-review
Published
On the misgivings of anthropomorphic consensus polling in defining the complexity of life
Egel, Richard, 2012, In: Journal of Biomolecular Structure & Dynamics. 29, 4, p. 615-616 2 p.
Research output: Contribution to journal › Comment/debate › Research › peer-review
Published
Nucleotide sequence of pOLA52: a conjugative IncX1 plasmid from Escherichia coli which enables biofilm formation and multidrug efflux
Norman, A., Hansen, Lars Hestbjerg, She, Q. & Sørensen, Søren Johannes, 2008, In: Plasmid. 60, 1, p. 59-74 15 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Nucleotide sequence and PCR-amplification of a polymorphic MboI site in human DNA marker D4S95 linked to the Huntington disease locus.
Nørremølle, Anne, Sørensen, S. A. & Arctander, P., 1992, In: Clinical Genetics. 42, p. 210-211 2 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Nucleotide diversity and linkage disequilibrium of nine genes with putative effects on flowering time in perennial ryegrass (Lolium perenne L.)
Fiil, A., Lenk, I., Petersen, K., Jensen, C. S., Nielsen, K. K., Schejbel, B., Andersen, J. R. & Lübberstedt, T., 2011, In: Plant Science. 180, 2, p. 228-237 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Nucleosome structure of the yeast CHA1 promoter: analysis of activation-dependent chromatin remodeling of an RNA-polymerase-II-transcribed gene in TBP and RNA pol II mutants defective in vivo in response to acidic activators
Moreira, José & Holmberg, Steen, 1998, In: E M B O Journal. 17, 20, p. 6028-38 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Nucleation and spreading of a heterochromatic domain in fission yeast
Obersriebnig, M. J., Pallesen, E. M. H., Sneppen, Kim, Trusina, Ala & Thon, Genevieve, 2016, In: Nature Communications. 7, 11 p., 11518.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Novel viral genomes identified from six metagenomes reveal wide distribution of archaeal viruses and high viral diversity in terrestrial hot springs
Islin, S. R., Menzel, P., Krogh, Anders, Young, M. & Peng, Xu, 2016, In: Environmental Microbiology. 18, 3, p. 863-874 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Novel thermostable amine transferases from hot spring metagenomes
Ferrandi, E. E., Previdi, A., Bassanini, I., Riva, S., Peng, Xu & Monti, D., Jun 2017, In: Applied Microbiology and Biotechnology. 101, 12, p. 4963-4979 17 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Novel overlapping coding sequences in Chlamydia trachomatis
Jensen, K. T., Petersen, L., Falk, S., Iversen, P., Andersen, P., Theisen, Michael & Krogh, Anders, 2006, In: FEMS Microbiology Reviews. 265, 1, p. 106-17
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Novel method for quantitative estimation of biofilms
Syal, K., Oct 2017, In: Current Microbiology. 74, 10, p. 1194-1199 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Novel insights into gene regulation of the rudivirus SIRV2 infecting Sulfolobus cells
Okutan, E., Deng, Ling, Mirlashari, S., Uldahl, K., Halim, M., Liu, C., Garrett, Roger Antony, She, Q. & Peng, Xu, 2013, In: R N A Biology. 10, 5, p. 1-11 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Novel death regulators in plant immunity
Malinovsky, F. G., 2009, Biologisk Institut: Museum Tusculanum. 55 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
Novel bacterial sulfur oxygenase reductases from bioreactors treating gold-bearing concentrates
Chen, Z., Liu, Y., Wu, J., She, Q., Jiang, C. & Liu, S., 2007, In: Applied Microbiology and Biotechnology. 74, 3, p. 688-98 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Novel archaeal plasmid pAH1 and its interactions with the lipothrixvirus AFV1
Basta, T., Smyth, J., Forterre, P., Prangishvili, D. & Peng, Xu, 2009, In: Molecular Microbiology. 71, 1, p. 23-34 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Novel Cyclic Lipopeptide Antibiotics: Effects of Acyl Chain Length and Position
Jensen, S. K., Thomsen, T. T., Oddo, A., Franzyk, Henrik, Løbner-Olesen, Anders & Hansen, Paul Robert, 2020, In: International Journal of Molecular Sciences . 21, 16, 18 p., 5829.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Novel (p)ppGpp Binding and Metabolizing Proteins of Escherichia coli
ZHANG, YONG, Zbornikova, E., Rejman, D. & Gerdes, K., 2018, In: mBio. 9, 2, 20 p., e02188-17.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Nonmalignant T cells stimulate growth of T-cell lymphoma cells in the presence of bacterial toxins
Woetmann, Anders , Lovato, P., Eriksen, K. W., Krejsgaard, T., Labuda, T., Zhang, Q., Mathiesen, A., Geisler, Carsten, Svejgaard, A., Wasik, M. A. & Ødum, Niels, 2007, In: Blood. 109, 8, p. 3325-32 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
New vectors in fission yeast: application for cloning the his2 gene
Weilguny, D., Praetorius, M., Carr, A., Egel, Richard, Nielsen, O. & Nielsen, Olaf, 1 Mar 1991, In: Gene. 99, 1, p. 47-54 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
New romance between RNA degradation pathways: Mmi1 and RNAi meet on heterochromatic islands
Holm, L. R. & Thon, Genevieve, 2012, In: E M B O Journal. 31, p. 2242 - 2243 2 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
New locus important for Myxococcus social motility and development
Zhang, C. Y., Cai, K., Liu, H., ZHANG, YONG, Pan, H. W., Wang, B., Wu, Z. H., Hu, W. & Li, Y. Z., Nov 2007, In: Journal of Bacteriology. 189, 21, p. 7937-7941 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
New insights into donor directionality of mating-type switching in Schizosaccharomyces pombe
Maki, T., Ogura, N., Haber, J. E., Iwasaki, H. & Thon, Genevieve, May 2018, In: PLOS Genetics. 14, 5, p. 1-25 e1007424.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
New aspects of protein stability and turnover in the regulation of genome integrity: the role of Cmr1 and Rad56
Gallina, I., 2013, Department of Biology, Faculty of Science, University of Copenhagen. 195 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
New Insights into the Antimicrobial Action of Cinnamaldehyde towards Escherichia coli and Its Effects on Intestinal Colonization of Mice
Pereira, W. A., Pereira, C. D. S., Assunção, R. G., da Silva, I. S. C., Rego, F. S., Alves, L. S. R., Santos, J. S., Nogueira, F. J. R., Zagmignan, A., Thomsen, T. T., Løbner-Olesen, Anders, Krogfelt, K. A., da Silva, L. C. N. & Abreu, A. G., 2021, In: Biomolecules. 11, 2, 14 p., 302.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Neuropsychological assessment of chronic non-malignant pain patients treated in a multidisciplinary pain centre
Sjøgren, P., Christrup, Lona Louring, Petersen, Morten & Højsted, J., Aug 2005, In: European Journal of Pain. 9, 4, p. 453-62 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Neither Reb1p nor poly(dA*T) elements are responsible for the highly specific chromatin organization at the ILV1 promoter
Moreira, José, Hörz, W. & Holmberg, Steen, 2001, In: Journal of Biological Chemistry. 277, 5, p. 3202-9 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Nanobiomotors of archaeal DNA repair machineries: current research status and application potential
Han, W., Shen, Y. & She, Q., 2014, In: Cell & Bioscience. 4, 32, 12 p.
Research output: Contribution to journal › Review › Research › peer-review
Published
NQO-induced DNA-less cell formation is associated with chromatin protein degradation and dependent on A₀A₁-ATPase in Sulfolobus
Han, W., Xu, Y., Feng, X., Liang, Y. X., Huang, L., Shen, Y. & She, Q., 14 Aug 2017, In: Frontiers in Microbiology. 8, 12 p., 1480.
Research output: Contribution to journal › Journal article › Research › peer-review
E-pub ahead of print
NBR1-mediated selective autophagy of ARF7 modulates root branching
Ebstrup, E., Ansbøl, J., Paez-Garcia, A., Culp, H., Chevalier, J., Clemmens, P., Coll, N. S., Moreno-Risueno, M. A. & Rodriguez, Eleazar, 2024, (E-pub ahead of print) In: EMBO Reports.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
NAC genes: Time-specific regulators of hormonal signaling in Arabidopsis
Jensen, M. K., Kjærsgaard, T., Petersen, K. & Skriver, Karen, 2010, In: Plant Signalling & Behavior. 5, 7, 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Myocardial perfusion defects and the left ventricular ejection fraction disclosed by scintigraphy in patients with primary hyperparathyroidism
Ogard, C. G., Søndergaard, S. B., drb459, drb459, Jakobsen, H., Nielsen, S. L. & drb459, drb459, Jul 2005, In: World Journal of Surgery. 29, 7, p. 914-6 3 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mutations that cause threonine sensitivity identify catalytic and regulatory regions of the aspartate kinase of Saccharomyces cerevisiae
Arévalo-Rodríguez, M., Calderón, I. L. & Holmberg, Steen, 1999, In: Yeast. 15, 13, p. 1331-45 14 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mutations in the RAM network confer resistance to the thiol oxidant 4,4'-dipyridyl disulfide
López-Mirabal, H. R., Winther, Jakob R., Thorsen, M. & Kielland-Brandt, M. C., 2008, In: Molecular Genetics and Genomics. 279, 6, p. 629-42 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mutations in cyr1 and pat1 reveal pheromone-induced G1 arrest in the fission yeast Schizosaccharomyces pombe
Davey, W. J., Nielsen, O. & Nielsen, Olaf, 1 Aug 1994, In: Current Genetics. 26, 2, p. 105-12 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mutations in a Single Signaling Pathway Allow Cell Growth in Heavy Water
Kampmeyer, Caroline, Johansen, Jens Vilstrup, Holmberg, Christian, Karlson, M., Gersing, S. K., Nunes Bordallo, Heloisa, Kragelund, Birthe Brandt, Lerche, M. H., Jourdain, I., Winther, Jakob R. & Hartmann-Petersen, Rasmus, 2020, In: A C S Synthetic Biology. 9, 4, p. 733-748 16 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mutations in 23S rRNA at the peptidyl transferase center and their relationship to linezolid binding and cross-resistance
Long, K. S., Munck, C., Andersen, T. M. B., Schaub, M. A., Hobbie, S. N., Böttger, E. C. & Vester, B., 2010, In: Antimicrobial Agents and Chemotherapy. 54, 11, p. 4705-4713 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mutation of miRNA target sequences during human evolution.
Gardner, P. P. & Vinther, Jeppe, 2008, In: Trends in Genetics. 24, 6, p. 262-5 3 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Multiple consecutive initiation of replication producing novel brush-like intermediates at the termini of linear viral dsDNA genomes with hairpin ends.
Martinez Alvarez, Laura, Bell, S. D. & Peng, Xu, 2016, In: Nucleic Acids Research. 44, 18, p. 8799-8809 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Multiple DNA binding proteins contribute to timing of chromosome replication in E. coli
Riber, Leise, Frimodt-Møller, Jakob, Charbon, Godefroid & Løbner-Olesen, Anders, 2016, In: Frontiers in Molecular Biosciences. 3, 9 p., 29.
Research output: Contribution to journal › Review › Research › peer-review
Published
Mte1 interacts with Mph1 and promotes crossover recombination and telomere maintenance
Pinela da Silva, S. C., Altmannova, V., Luke-Glaser, S., Henriksen, P., Gallina, I., Yang, X., Choudhary, Chunaram, Luke, B., Krejci, L. & Lisby, Michael, 2016, In: Genes & Development. 30, 6, p. 700-717 18 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Morphology and genome organisation of the virus PSV of the hyperthermophilic archaeal genera Pyrobaculum and Thermoproteus: A novel virus family, the Globuloviridae
Häring , M., Peng, Xu & Brugger K., Rachel R., Stetter K.O., Garrett R.A.,Prangishvili D., B. K. ,. R. R. ,. S. K. O. ,. G. R. A. ,. D., 2004, In: Virology.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Morphological classification of plant cell deaths
van Doorn, W. G., Beers, E. P., Dangl, J. L., Franklin-Tong, V. E., Gallois, P., Hara-Nishimura, I., Jones, A. M., Kawai-Yamada, M., Lam, E., Mundy, J., Mur, L. A. J., Petersen, Morten, Smertenko, A., Taliansky, M., Van Breusegem, F., Wolpert, T., Woltering, E., Zhivotovsky, B. & Bozhkov, P. V., 2011, In: Cell Death and Differentiation. 18, 8, p. 1241-1246 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Monitoring plasmid-mediated horizontal gene transfer in microbiomes: recent advances and future perspectives
Pinilla Redondo, Rafael, Cyriaque, V., Jacquiod, S., Sørensen, Søren Johannes & Riber, Leise, 2018, In: Plasmid. 99, p. 56-67
Research output: Contribution to journal › Review › Research › peer-review
Published
Molecular evidence for origin, diversification and ancient gene duplication of plant subtilases (SBTs)
Xu, Y., Wang, S., Li, L., Sahu, S. K., Petersen, Morten, Liu, X., Melkonian, M., Zhang, G. & Liu, Huan, 2019, In: Scientific Reports. 9, 10 p., 12485.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Molecular composition of IMP1 ribonucleoprotein granules.
Jønson, L., Vikesaa, J., Krogh, Anders, Nielsen, Lars Kamp, Hansen, T. V., Borup, R., Johnsen, A. H., Christiansen, Jan & Nielsen, Finn Cilius, 2007, In: Molecular and Cellular Proteomics. 6, 5, p. 798-811 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Molecular cloning of a novel bioH gene from an environmental metagenome encoding a carboxylesterase with exceptional tolerance to organic solvents
Shi, Y., Pan, Y., Li, B., He, W., She, Q. & Chen, L., 2013, In: B M C Biotechnology. 13, 11 p., 13.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Molecular cloning and antimicrobial activity of enterolysin A and helveticin J of bacteriolysins from metagenome of Chinese traditional fermented foods
Zhang, T., Pan, Y., Li, B., Ou, J., Zhang, J., Chen, Y., Peng, Xu & Chen, L., 2013, In: Food Control. 31, 2, p. 499-507 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Molecular biology of fuselloviruses and their satellites
Contursi, P., Fusco, S., Cannio, R. & She, Q., 2014, In: Extremophiles. 18, 3, p. 473-489 17 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Molecular basis for inhibition of type III-B CRISPR-Cas by an archaeal viral anti-CRISPR protein
Lin, Jinzhong, Alfastsen, L., Bhoobalan, Yuvaraj & Peng, Xu, 2023, In: Cell Host and Microbe. 31, 11, p. 1837-1849.e5 19 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Molecular Regulation of SpoT
Schicketanz, Muriel Leandra, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 190 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
Molecular Epidemiology of HCV RNA Genotype-3 in Dhaka City, Bangladesh
Rahman, M. A., Islam, M. M., Ali, M. E., Islam, M. A., Afroze, F., Hossain, Mohammad Shamim & Rus'd, A. A., 2023, In: Global Medical Genetics. 10, 3, p. 199-204 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Modulation of backbone flexibility for effective dissociation of antibacterial and hemolytic activity in cyclic peptides
Oddo, A., Thomsen, T. T., Britt, H. M., Løbner-Olesen, Anders, Thulstrup, Peter Waaben, Sanderson, J. M. & Hansen, Paul Robert, 2016, In: ACS Medicinal Chemistry Letters. 7, 8, p. 741-745 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Modulation of CRISPR locus transcription by the repeat-binding protein Cbp1 in Sulfolobus
Deng, Ling, Kenchappa, C. S., Peng, Xu, She, Q. & Garrett, Roger Antony, 2012, In: Nucleic Acids Research. 40, 6, p. 2470-2480 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Modeling promoter grammars with evolving hidden Markov models
Won, K., Sandelin, Albin Gustav, Marstrand, T. T. & Krogh, Anders, 2008, In: Bioinformatics. 24, 15, p. 1669-75 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Model quality assessment using distance constraints from alignments
Paluszewski, M. & Karplus, K., 2008, In: Proteins - Structure Function and Bioinformatics.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mitogen-activated protein kinase signaling in plants
Rodriguez, M. C. S., Petersen, Morten & Mundy, J., 2010, In: Annual Review of Plant Biology. 61, 1, p. 621-649 29 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mitochondrial DNA diversity and population structure of a forest-dependent rodent, Praomys taitae (Rodentia: Muridae) Heller 1911, in the fragmented forest patches of Taita Hills, Kenya
Nyakaana, S., Tumusiime, C., Oguge, N., Siegismund, Hans Redlef, Arctander, P. & Muwanika, V., 2008, In: South African Journal of Science. 104, 11/12, p. 499-504
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mining Hot Springs for Biodiversity and Novel Enzymes
Islin, S. R., 2016, Department of Biology, Faculty of Science, University of Copenhagen.
Research output: Book/Report › Ph.D. thesis › Research
Published
Minimal enhancer elements of the leghemoglobin lba and lbc3 gene promoters from Glycine max L. have different properties
She, Q., Lauridsen, P., Stougaard, J. & Marcker, K. A., 1993, In: Plant Molecular Biology. 22, 6, p. 945-56 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mik1 levels accumulate in S phase and may mediate an intrinsic link between S phase and mitosis
Christensen, P. U., Bentley, N. J., Martinho, R. G., Nielsen, O., Carr, A. & Nielsen, Olaf, 14 Mar 2000, In: Proceedings of the National Academy of Sciences of the United States of America. 97, 6, p. 2579-84 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Microbiology: pumping persisters
Gerdes, K. & Semsey, S., 2016, In: Nature. 534, 7605, p. 41-42 2 p.
Research output: Contribution to journal › Comment/debate › Research › peer-review
Published
MicroRNA-145 targets YES and STAT1 in colon cancer cells
Gregersen, Lea Haarup, Jacobsen, A. B., Frankel, Lisa, Wen, J., Krogh, Anders & Lund, Anders H., 2010, In: PLoS ONE. 5, 1, p. e8836
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Metagenomic analyses reveal phylogenetic diversity of carboxypeptidase gene sequences in activated sludge of a wastewater treatment plant in Shanghai, China
Jin, H., Li, B., Peng, Xu & Chen, L., 2014, In: Annals of Microbiology. 64, 2, p. 689-697 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Metagenomic analyses of novel viruses and plasmids from a cultured environmental sample of hyperthermophilic neutrophiles
Garrett, Roger Antony, Prangishvili, D., Shah, S. A., Reuter, M., Stetter, K. O. & Peng, Xu, 1 Nov 2010, In: Environmental Microbiology. 12, 11, p. 2918-30 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Meiosis and SUMO
Holm, L. R., 2014, Department of Biology, Faculty of Science, University of Copenhagen. 170 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
Mediator regulates non-coding RNA transcription at fission yeast centromeres
Thorsen, M., Hansen, H., Venturi, M., Holmberg, Steen & Thon, Genevieve, 2012, In: Epigenetics & Chromatin. 5, p. 1-10 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mediastinalt parathyroideacysteadenom--en sjaelden årsag til primaer hyperparatyroidisme
Øgard, C. G., Nielsen, S. L., Jakobsen, H., Leth-Espensen, P., drb459, drb459 & drb459, drb459, 28 Aug 2006, In: Ugeskrift for Laeger. 168, 35, p. 2921-2 2 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mechanisms of bacterial persistence during stress and antibiotic exposure
Harms, A., Maisonneuve, E. & Gerdes, K., 2016, In: Science. 354, 6318, 10 p., aaf4268.
Research output: Contribution to journal › Review › Research › peer-review
Published
Mechanisms and regulation of mitotic recombination in Saccharomyces cerevisiae
Symington, L. S., Rothstein, R. & Lisby, Michael, 2014, In: Genetics (Print). 198, 3, p. 795-835 41 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mating-type switching by homology-directed recombinational repair: a matter of choice
Thon, Genevieve, Maki, T., Haber, J. E. & Iwasaki, H., 2019, In: Current Genetics. 65, 2, p. 351-362
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mating-type determination in Schizosaccharomyces pombe
Ekwall, K. & Thon, Genevieve, Aug 2017, In: Cold Spring Harbor Protocols. 2017, 8, p. 641-642 2 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Matching NLR immune receptors to autoimmunity in camta3 mutants using antimorphic NLR alleles
Lolle, S., Greeff, M. C., Petersen, K., Roux, M. E., Jensen, M. K., Bressendorff, Simon, Rodriguez, Eleazar, Sømark, K., Mundy, J. & Petersen, Morten, 2017, In: Cell Host & Microbe. 21, 4, p. 518-529 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mapping the double-strand breaks at the mating-type locus in fission yeast by genomic sequencing
Nielsen, O., Egel, Richard & Nielsen, Olaf, 1 Jan 1989, In: E M B O Journal. 8, 1, p. 269-76 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mammalian RNA polymerase II core promoters: insights from genome-wide studies.
Sandelin, Albin Gustav, Carninci, P., Lenhard, B., Ponjavic, J., Hayashizaki, Y. & Hume, D. A., 2007, In: Nature Reviews. Genetics. 8, 6, p. 424-36 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Malignant Tregs express low molecular splice forms of FOXP3 in Sézary syndrome
Krejsgaard, T., Gjerdrum, L. M., Ralfkiaer, E., Lauenborg, B., Eriksen, K. W., Mathiesen, A., Bovin, L. F., Gniadecki, R., Geisler, Carsten, Ryder, L. P., Zhang, Q., Wasik, M. A., Ødum, Niels & Woetmann, Anders , 2008, In: Leukemia. p. 2230-2239 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Making sense of plant autoimmunity and "negative regulators'
Rodriguez, Eleazar, Ghoul, H. E., Mundy, J. & Petersen, Morten, 2016, In: F E B S Journal. 283, 8, p. 1385-1391 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Major and minor crRNA annealing sites facilitate low stringency DNA protospacer binding prior to Type I-A CRISPR-Cas interference in Sulfolobus
Mousaei, M., Deng, Ling, She, Q. & Garrett, Roger Antony, 2016, In: R N A Biology. 13, 11, p. 1166-1173 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
MYB75 phosphorylation by MPK4 is required for light-induced anthocyanin accumulation in arabidopsis
Li, S., Wang, W., Gao, J., Yin, K., Wang, R., Wang, C., Petersen, Morten, Mundy, J. & Qiu, J., 2016, In: The Plant Cell. 28, 11, p. 2866-2883 18 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
MRX protects fork integrity at protein-DNA barriers, and its absence causes checkpoint activation dependent on chromatin context
Bentsen, I. B., Nielsen, I., Lisby, Michael, Nielsen, H. B., Sen Gupta, S., Mundbjerg, K., Andersen, A. H. & Bjergbaek, L., 2013, In: Nucleic Acids Research. 41, 5, p. 3173-3189 17 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
MRN1 implicates chromatin remodeling complexes and architectural factors in mRNA maturation.
Düring, L., Thorsen, M., Petersen, D., Køster, B., Jensen, T. H. & Holmberg, Steen, 2012, In: P L o S One. 7, 9, 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
MAP-kinaser--molekylaere transistorer i dyr og planter.
Petersen, Morten, Brodersen, P. & Mundy, J., 2002, In: Ugeskrift for læger. 164, 24, p. 3184-8 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
MAP kinase cascades in Arabidopsis innate immunity
Rasmussen, M. W., Roux, M. E., Petersen, Morten & Mundy, J., 2012, In: Frontiers in Plant Science. 3, 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
MAP Kinase 4 Substrates and Plant Innate Immunity
Rasmussen, M. W., 2015, Department of Biology, Faculty of Science, University of Copenhagen.
Research output: Book/Report › Ph.D. thesis › Research
Published
Long-term industrial metal contamination unexpectedly shaped diversity and activity response of sediment microbiome
Jacquiod, S. J. A., Cyriaque, V., Riber, Leise, Al-Soud, W. A., Gillan, D. C., Wattiez, R. & Sørensen, Søren Johannes, 15 Feb 2018, In: Journal of Hazardous Materials. 344, p. 299-307 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Localization of recombination proteins and Srs2 reveals anti-recombinase function in vivo
Burgess, R. C., Lisby, Michael, Altmannova, V., Krejci, L., Sung, P. & Rothstein, R., 2009, In: Journal of Cell Biology. 185, 6, p. 969-81 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Live cell microscopy of DNA damage response in Saccharomyces cerevisiae
Pinela da Silva, S. C., Gallina, I., Eckert-Boulet, N. V. & Lisby, Michael, 2012, DNA repair protocols. Springer Science+Business Media, p. 433-443 11 p. (Methods in Molecular Biology, Vol. 920).
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
Published
Life cycle characterization of Sulfolobus monocaudavirus 1, an extremophilic spindle-shaped virus with extracellular tail development
Uldahl, K. B., Jensen, S. B., Bhoobalan, Yuvaraj, Martinez Alvarez, Laura, Papathanasiou, P. & Peng, Xu, Jun 2016, In: Journal of Virology. 90, 12, p. 5693-5699 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Length-dependent processing of telomeres in the absence of telomerase
Fallet, E., Jolivet, P., Soudet, J., Lisby, Michael, Gilson, E. & Teixeira, M. T., 2014, In: Nucleic Acids Research. 42, 6, p. 3648-3665 18 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Lazarus1, a DUF300 protein, contributes to programmed cell death associated with Arabidopsis acd11 and the hypersensitive response
Malinovsky, F. G., Brodersen, P., Fiil, Berthe Katrine, McKinney, L. V., Thorgrimsen, S., Beck, M., Nielsen, H. B., Pietra, S., Zipfel, C., Robatzek, S., Petersen, Morten, Hofius, D. & Mundy, J., 2010, In: P L o S One. 5, 9, 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Large Intronic Deletion of the Fragile Site Gene PRKN Dramatically Lowers Its Fragility Without Impacting Gene Expression
Munk, S. H. N., Voutsinos, Vasileios & Østergaard, Vibe Hallundbæk, 2021, In: Frontiers in Genetics. 12, 9 p., 695172.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Lack of the RNA chaperone Hfq attenuates pathogenicity of several Escherichia coli pathotypes towards Caenorhabditis elegans
Bojer, M. S., Jakobsen, H., Struve, C., Krogfelt, K. A. & Løbner-Olesen, Anders, 2012, In: Microbes and Infection. 14, 12, p. 1034-1039 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
LL-37 fragments have antimicrobial activity against Staphylococcus epidermidis biofilms and wound healing potential in HaCaT cell line
Saporito, P., Vang Mouritzen, M., Løbner-Olesen, Anders & Jenssen, H., 2018, In: Journal of Peptide Science. 24, 7, 12 p., e3080.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Knockouts of RecA-Like proteins RadC1 and RadC2 have distinct responses to DNA damage agents in Sulfolobus islandicus
Liang, P., Han, W., Huang, Q., Li, Y., Ni, J., She, Q. & Shen, Y., 2013, In: Journal of Genetics and Genomics. 40, 10, p. 533-542 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Knockout of Arabidopsis accelerated-cell-death11 encoding a sphingosine transfer protein causes activation of programmed cell death and defense.
Brodersen, P., Petersen, Morten, Pike, H. M., Olszak, B., Skov, Søren, Odum, N., Jørgensen, L. B., Brown, R. E. & Mundy, J., 2002, In: Genes & Development. 16, 4, p. 490-502 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Key role of Ser562/661 in Snf1-dependent regulation of Cat8p in Saccharomyces cerevisiae and Kluyveromyces lactis
Charbon, Godefroid, Breunig, K. D., Wattiez, R., Vandenhaute, J. & Noël-Georis, I., May 2004, In: Molecular and Cellular Biology. 24, 10, p. 4083-91 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
KBERG: KnowledgeBase for Estrogen Responsive Genes.
Tang, S., Zhang, Z., Tan, S. L., Tang, M. E., Kumar, A. P., Ramadoss, S. K. & Bajic, V. B., 2007, In: Nucleic Acids Research. 35, Database issue, p. D732-6
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Jak3- and JNK-dependent vascular endothelial growth factor expression in cutaneous T-cell lymphoma
Krejsgaard, T., Vetter-Kauczok, C. S., Woetmann, Anders , Lovato, P., Labuda, T., Eriksen, K. W., Zhang, Q., Becker, J. C. & Ødum, Niels, 2006, In: Leukemia. 20, 10, p. 1759-66 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update.
Bryne, J. C., Valen, E., Tang, M. E., Marstrand, T., Winther, Ole, da Piedade, I., Krogh, Anders, Lenhard, B. & Sandelin, Albin Gustav, 2008, In: Nucleic Acids Research. 36, Database issue, p. D102-6
Research output: Contribution to journal › Journal article › Research › peer-review
Published
JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles
Portales-Casamar, E., Thongjuea, S., Kwon, A. T., Arenillas, D., Zhao, X., Valen, E., Yusuf, D., Lenhard, B., Wasserman, W. W. & Sandelin, Albin Gustav, 2009, In: Nucleic Acids Research.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
JAFA: a protein function annotation meta-server.
Friedberg, I., Harder, T. & Godzik, A., 2006, In: Nucleic Acids Research. 34, Web Server issue, p. W379-81
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Isolation of a novel protein, P12-from adult Drosophila melanogaster that inhibits deoxyribonucleoside and protein kinase activities and activates 3'-5'-exonuclease activity
Christiansen, L. S., Zanten, G. V., Berenstein, D., Lauridsen, M., Kjærulff, S., Søndergaard, Leif & Munch-Petersen, B., 2016, In: Nucleosides, Nucleotides and Nucleic Acids. 35, 10-12, p. 699-706 8 p.
Research output: Contribution to journal › Conference article › Research › peer-review
Published
Isolation and characterization of the first Xylanolytic hyperthermophilic euryarchaeon Thermococcus sp strain 2319x1 and its unusual multidomain glycosidase
Gavrilov, S. N., Stracke, C., Jensen, K., Menzel, P., Kallnik, V., Slesarev, A., Sokolova, T., Zayulina, K., Bräsen, C., Bonch-Osmolovskaya, E. A., Peng, Xu, Kublanov, I. V. & Siebers, B., 2016, In: Frontiers in Microbiology. 7, 17 p., 552.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Iron chelation increases the tolerance of Escherichia coli to hyper-replication stress
Charbon, Godefroid, Klitgaard, R. N., Liboriussen, C. D., Thulstrup, Peter Waaben, Maffioli, S. I., Donadio, S. & Løbner-Olesen, Anders, 2018, In: Scientific Reports. 8, 1, 14 p., 10550.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Investigation of the Sulfolobus islandicus III-B Cmr-α CRISPR-Cas system and SMV1 anti-CRISPR activity
Guo, T., 2019, Department of Biology, Faculty of Science, University of Copenhagen.
Research output: Book/Report › Ph.D. thesis › Research
Published
Investigating the value of immersive virtual reality tools for organizational training: An applied international study in the biotech industry
Baceviciute, S., Cordoba, A. L., Wismer, P., Jensen, T. V., Klausen, M. & Makransky, Guido, Apr 2022, In: Journal of Computer Assisted Learning. 38, 2, p. 470-487
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Investigating non-coding genome content using high-throughput sequencing data
Nygaard, S., 2009, Biologisk Institut: Museum Tusculanum. 34 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
Intramolecular Interactions Dominate the Autoregulation of Escherichia coli Stringent Factor RelA
Turnbull, K. J., Dzhygyr, I., Lindemose, Søren, Hauryliuk, V. & Roghanian, Mohammad, 2019, In: Frontiers in Microbiology. 10, 12 p., 1966.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Interplays between Sumoylation, SUMO-Targeted Ubiquitin Ligases, and the Ubiquitin-Adaptor Protein Ufd1 in Fission Yeast
Køhler, J. B., 2014, Department of Biology, Faculty of Science, University of Copenhagen. 194 p.
Research output: Book/Report › Ph.D. thesis › Research
E-pub ahead of print
International consensus guidelines for the definition, detection, and interpretation of autophagy-dependent ferroptosis
Chen, X., Tsvetkov, A. S., Shen, H., Isidoro, C., Ktistakis, N. T., Linkermann, A., Koopman, W. J. H., Simon, H., Galluzzi, L., Luo, S., Xu, D., Gu, W., Peulen, O., Cai, Q., Rubinsztein, D. C., Chi, J., Zhang, D. D., Li, C., Toyokuni, S., Liu, J. & 49 others, Roh, J., Dai, E., Juhasz, G., Liu, W., Zhang, J., Yang, M., Liu, J., Zhu, L., Zou, W., Piacentini, M., Ding, W., Yue, Z., Xie, Y., Petersen, Morten, Gewirtz, D. A., Mandell, M. A., Chu, C. T., Sinha, D., Eftekharpour, E., Zhivotovsky, B., Besteiro, S., Gabrilovich, D. I., Kim, D., Kagan, V. E., Bayir, H., Chen, G., Ayton, S., Lünemann, J. D., Komatsu, M., Krautwald, S., Loos, B., Baehrecke, E. H., Wang, J., Lane, J. D., Sadoshima, J., Yang, W. S., Gao, M., Münz, C., Thumm, M., Kampmann, M., Yu, D., Lipinski, M. M., Jones, J. W., Jiang, X., Zeh, H. J., Kang, R., Klionsky, D. J., Kroemer, G. & Tang, D., 2024, (E-pub ahead of print) In: Autophagy. p. 1-34
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Interaction of extremophilic archaeal viruses with human and mouse complement system and viral biodistribution in mice
Wu, L., Uldahl, K. B., Chen, F., Benasutti, H., Logvinski, D., Vu, V., Banda, N. K., Peng, Xu, Simberg, D. & Moghimi, S. M., Oct 2017, In: Molecular Immunology. 90, p. 273-279 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Inter-viral conflicts that exploit host CRISPR immune systems of Sulfolobus
Erdmann, S., Le Moine Bauer, S. & Garrett, Roger Antony, 2014, In: Molecular Microbiology. 91, 5, p. 900-917 18 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Integrity of a heterochromatic domain ensured by its boundary elements
Charlton, Sebastian Jespersen, Jørgensen, M. M. & Thon, Genevieve, 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 35, p. 21504-21511 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Insulin-like growth factor II: complexity of biosynthesis and receptor binding
Gammeltoft, S., Christiansen, Jan, Nielsen, F. C. & Verland, S., 1991, In: Advances in Experimental Medicine and Biology. 293, p. 31-44 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Insulin-like growth factor II mRNA, peptides, and receptors in a thoracopulmonary malignant small round cell tumor
Nielsen, F. C., Orskov, C., Haselbacher, G., Ramlau, J., Christiansen, Jan, Schmiegelow, Kjeld & Rehfeld, Jens Frederik, 1994, In: Cancer. 73, 4, p. 1312-9 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Insights into the structure, function and evolution of the radical-SAM 23S rRNA methyltransferase Cfr that confers antibiotic resistance in bacteria
Kaminska, K. H., Purta, E., Hansen, L. H., Bujnicki, J. M., Vester, B. & Long, K. S., 2010, In: Nucleic Acids Research. 38, 5, p. 1652-1663 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Insights into the evolutionary conserved regulation of Rio ATPase activity
Knüppel, R., Christensen, R. H., Gray, F. C., Esser, D., Strauss, D., Medenbach, J., Siebers, B., MacNeill, S. A., LaRonde, N. & Ferreira-Cerca, S., 2018, In: Nucleic Acids Research. 46, 3, p. 1441-1456
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Insights into Vibrio parahaemolyticus CHN25 response to artificial gastric fluid stress by transcriptomic analysis
Sun, X., Liu, T., Peng, Xu & Chen, L., 2014, In: International Journal of Molecular Sciences (Online). 15, 12, p. 22539-22562 24 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Initiation of Replication in Escherichia coli: A Comprehensive Study in Regulation of Initiation and the Interlink to Chromosomal Organization
Frimodt-Møller, Jakob, 2015, Department of Biology, Faculty of Science, University of Copenhagen. 205 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
Initiation of DNA replication in Escherichia coli after overproduction of the DnaA protein
Skarstad, K., Løbner-Olesen, Anders, Atlung, T., von Meyenburg, K. & Boye, E., Jul 1989, In: Molecular General Genetics. 218, 1, p. 50-6 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Inhibition of protein phosphatase 2A induces serine/threonine phosphorylation, subcellular redistribution, and functional inhibition of STAT3
Woetmann, Anders , Nielsen, M., Christensen, S. T., Brockdorff, J., Kaltoft, K., Engel, A. M., Skov, S., Brender, C., Geisler, Carsten, Svejgaard, A., Rygaard, J., Leick, V. & Odum, N., 1999, In: Proceedings of the National Academy of Science of the United States of America. 96, 19, p. 10620-5 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Inhibition of constitutively activated Stat3 correlates with altered Bcl-2/Bax expression and induction of apoptosis in mycosis fungoides tumor cells
Nielsen, M., Kaestel, C. G., Eriksen, K. W., Woetmann, Anders , Stokkedal, T., Kaltoft, K., Geisler, Carsten, Röpke, C. & Odum, N., 1999, In: Leukemia. 13, 5, p. 735-8 3 p.
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Published
Inhibition of Type III CRISPR-Cas Immunity by an Archaeal Virus-Encoded Anti-CRISPR Protein
Bhoobalan, Yuvaraj, Johansen, T. B., Di Cianni, N. & Peng, Xu, 2019, In: Cell. 179, 2, p. 448-458, e1-e11
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Inhibition of Flp Recombinase by the Topoisomerase I-targeting Drugs, Camptothecin and NSC-314622
From Frøhlich, R., Hansen, S. G., Lisby, Michael, Grainge, I., Westergaard, O., Jayaram, M. & Knudsen, B. R., 9 Mar 2001, In: Journal of Biological Chemistry. 276, 10, p. 6993-6997 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Inhibition of Escherichia coli chromosome replication by rifampicin treatment or during the stringent response is overcome by de novo DnaA protein synthesis
Riber, Leise & Løbner-Olesen, Anders, 2020, In: Molecular Microbiology. 114, 6, p. 906-919
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Inducible cell death in plant immunity.
Hofius, D., Tsitsigiannis, D. I., Jones, J. D. G. & Mundy, J., 2006, In: Seminars in Cancer Biology. 17, 2, p. 166-87 21 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Individual components of paired typical NLR immune receptors are regulated by distinct E3 ligases
Dong, O. X., Ao, K., Xu, F., Johnson, K. C. M., Wu, Y., Li, L., Xia, S., Liu, Y., Huang, Y., Rodriguez, Eleazar, Chen, X., Chen, S., Zhang, Y., Petersen, Morten & Li, X., 2018, In: Nature Plants. 4, 9, p. 699-710
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Inactivation of Target RNA Cleavage of a III-B CRISPR-Cas System Induces Robust Autoimmunity in Saccharolobus islandicus
Zhang, Y., Lin, Jinzhong, Tian, X., Wang, Y., Zhao, R., Wu, C., Wang, X., Zhao, P., Bi, X., Yu, Z., Han, W., Peng, N., Liang, Y. X. & She, Q., 2022, In: International Journal of Molecular Sciences . 23, 15, 16 p., 8515.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
In vivo activation of STAT3 in cutaneous T-cell lymphoma. Evidence for an antiapoptotic function of STAT3.
Sommer, V. H., Clemmensen, O. J., Nielsen, O., Wasik, M., Lovato, P., Brender, C., Eriksen, K. W., Woetmann, Anders , Kaestel, C. G., Nissen, Mogens Holst, Ropke, C., Skov, Søren & Ødum, Niels, 2004, In: Leukemia. 18, 7, p. 1288-95 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Implicating genes, pleiotropy, and sexual dimorphism at blood lipid loci through multi-ancestry meta-analysis
Kanoni, S., Graham, S. E., Wang, Y., Surakka, I., Ramdas, S., Zhu, X., Clarke, S. L., Bhatti, K. F., Vedantam, S., Winkler, T. W., Locke, A. E., Marouli, E., Zajac, G. J. M., Wu, K. H. H., Ntalla, I., Hui, Q., Klarin, D., Hilliard, A. T., Wang, Z., Xue, C. & 519 others, Thorleifsson, G., Helgadottir, A., Gudbjartsson, D. F., Holm, H., Olafsson, I., Hwang, M. Y., Han, S., Akiyama, M., Sakaue, S., Terao, C., Kanai, M., Zhou, W., Brumpton, B. M., Rasheed, H., Havulinna, A. S., Veturi, Y., Pacheco, J. A., Rosenthal, E. A., Lingren, T., Feng, Q. P., Kullo, I. J., Narita, A., Takayama, J., Martin, H. C., Hunt, K. A., Trivedi, B., Haessler, J., Giulianini, F., Bradford, Y., Miller, J. E., Campbell, A., Lin, K., Millwood, I. Y., Rasheed, A., Hindy, G., Faul, J. D., Zhao, W., Weir, D. R., Turman, C., Huang, H., Graff, M., Choudhury, A., Sengupta, D., Mahajan, A., Brown, M. R., Zhang, W., Yu, K., Schmidt, E. M., Pandit, A., Gustafsson, S., Yin, X., Luan, J., Zhao, J. H., Matsuda, F., Jang, H. M., Yoon, K., Medina-Gomez, C., Pitsillides, A., Hottenga, J. J., Wood, A. R., Ji, Y., Gao, Z., Haworth, S., Yousri, N. A., Mitchell, R. E., Chai, J. F., Aadahl, Mette, Bjerregaard, A. A., Yao, J., Manichaikul, A., Hwu, C. M., Hung, Y. J., Warren, H. R., Ramirez, J., Bork-Jensen, J., Kårhus, L. L., Goel, A., Sabater-Lleal, M., Noordam, R., Mauro, P., Matteo, F., McDaid, A. F., Marques-Vidal, P., Wielscher, M., Trompet, S., Sattar, N., Møllehave, L. T., Munz, M., Zeng, L., Huang, J., Yang, B., Poveda, A., Kurbasic, A., Lamina, C., Forer, L., Scholz, M., Galesloot, T. E., Bradfield, J. P., Ruotsalainen, S. E., Daw, E., Zmuda, J. M., Mitchell, J. S., Fuchsberger, C., Christensen, H., Brody, J. A., Vazquez-Moreno, M., Feitosa, M. F., Wojczynski, M. K., Wang, Z., Preuss, M. H., Mangino, M., Christofidou, P., Verweij, N., Benjamins, J. W., Engmann, J., Tsao, N. L., Verma, A., Slieker, R. C., Lo, K. S., Zilhao, N. R., Le, P., Kleber, M. E., Delgado, G. E., Huo, S., Ikeda, D. D., Iha, H., Yang, J., Liu, J., Demirkan, A., Leonard, H. L., Marten, J., Frank, M., Schmidt, B., Smyth, L. J., Cañadas-Garre, M., Wang, C., Nakatochi, M., Wong, A., Hutri-Kähönen, N., Sim, X., Xia, R., Huerta-Chagoya, A., Fernandez-Lopez, J. C., Lyssenko, V., Nongmaithem, S. S., Bayyana, S., Stringham, H. M., Irvin, M. R., Oldmeadow, C., Kim, H. N., Ryu, S., Timmers, P. R. H. J., Arbeeva, L., Dorajoo, R., Lange, L. A., Prasad, G., Lorés-Motta, L., Pauper, M., Long, J., Li, X., Theusch, E., Takeuchi, F., Spracklen, C. N., Loukola, A., Bollepalli, S., Warner, S. C., Wang, Y. X., Wei, W. B., Nutile, T., Ruggiero, D., Sung, Y. J., Chen, S., Liu, F., Yang, J., Kentistou, K. A., Banas, B., Nardone, G. G., Meidtner, K., Bielak, L. F., Smith, J. A., Hebbar, P., Farmaki, A. E., Hofer, E., Lin, M., Concas, M. P., Vaccargiu, S., van der Most, P. J., Pitkänen, N., Cade, B. E., van der Laan, S. W., Chitrala, K. N., Weiss, S., Bentley, A. R., Doumatey, A. P., Adeyemo, A. A., Lee, J. Y., Petersen, E. R. B., Nielsen, A. A., Choi, H. S., Nethander, M., Freitag-Wolf, S., Southam, L., Rayner, N. W., Wang, C. A., Lin, S. Y., Wang, J. S., Couture, C., Lyytikäinen, L. P., Nikus, K., Cuellar-Partida, G., Vestergaard, H., Hidalgo, B., Giannakopoulou, O., Cai, Q., Obura, M. O., van Setten, J., Li, X., Liang, J., Tang, H., Terzikhan, N., Shin, J. H., Jackson, R. D., Reiner, A. P., Martin, L. W., Chen, Z., Li, L., Kawaguchi, T., Thiery, J., Bis, J. C., Launer, L. J., Li, H., Nalls, M. A., Raitakari, O. T., Ichihara, S., Wild, S. H., Nelson, C. P., Campbell, H., Jäger, S., Nabika, T., Al-Mulla, F., Niinikoski, H., Braund, P. S., Kolcic, I., Kovacs, P., Giardoglou, T., Katsuya, T., de Kleijn, D., de Borst, G. J., Kim, E. K., Adams, H. H. H., Ikram, M. A., Zhu, X., Asselbergs, F. W., Kraaijeveld, A. O., Beulens, J. W. J., Shu, X. O., Rallidis, L. S., Pedersen, Oluf Borbye, Hansen, Torben, Mitchell, P., Hewitt, A. W., Kähönen, M., Pérusse, L., Bouchard, C., Tönjes, A., Chen, Y. D. I., Pennell, C. E., Mori, T. A., Lieb, W., Franke, A., Ohlsson, C., Mellström, D., Cho, Y. S., Lee, H., Yuan, J. M., Koh, W. P., Rhee, S. Y., Woo, J. T., Heid, I. M., Stark, K. J., Zimmermann, M. E., Völzke, H., Homuth, G., Evans, M. K., Zonderman, A. B., Polasek, O., Pasterkamp, G., Hoefer, I. E., Redline, S., Pahkala, K., Oldehinkel, A. J., Snieder, H., Biino, G., Schmidt, R., Schmidt, H., Bandinelli, S., Dedoussis, G., Thanaraj, T. A., Kardia, S. L. R., Peyser, P. A., Kato, N., Schulze, M. B., Girotto, G., Böger, C. A., Jung, B., Joshi, P. K., Bennett, D. A., De Jager, P. L., Lu, X., Mamakou, V., Brown, M., Caulfield, M. J., Munroe, P. B., Guo, X., Ciullo, M., Jonas, J. B., Samani, N. J., Kaprio, J., Pajukanta, P., Tusié-Luna, T., Aguilar-Salinas, C. A., Adair, L. S., Bechayda, S. A., de Silva, H. J., Wickremasinghe, A. R., Krauss, R. M., Wu, J. Y., Zheng, W., Hollander, A. I., Bharadwaj, D., Correa, A., Wilson, J. G., Lind, L., Heng, C. K., Nelson, A. E., Golightly, Y. M., Wilson, J. F., Penninx, B., Kim, H. L., Attia, J., Scott, R. J., Rao, D. C., Arnett, D. K., Hunt, S. C., Walker, M., Koistinen, H. A., Chandak, G. R., Mercader, J. M., Costanzo, M. C., Jang, D., Burtt, N. P., Villalpando, C. G., Orozco, L., Fornage, M., Tai, E., van Dam, R. M., Lehtimäki, T., Chaturvedi, N., Yokota, M., Liu, J., Reilly, D. F., McKnight, A. J., Kee, F., Jöckel, K. H., McCarthy, M. I., Palmer, C. N. A., Vitart, V., Hayward, C., Simonsick, E., van Duijn, C. M., Jin, Z. B., Qu, J., Hishigaki, H., Lin, X., März, W., Gudnason, V., Tardif, J. C., Lettre, G., Hart, L. M. T., Elders, P. J. M., Damrauer, S. M., Kumari, M., Kivimaki, M., van der Harst, P., Spector, T. D., Loos, Ruth, Province, M. A., Parra, E. J., Cruz, M., Psaty, B. M., Brandslund, I., Pramstaller, P. P., Rotimi, C. N., Christensen, K., Ripatti, S., Widén, E., Hakonarson, H., Grant, S. F. A., Kiemeney, L. A. L. M., de Graaf, J., Loeffler, M., Kronenberg, F., Gu, D., Erdmann, J., Schunkert, H., Franks, P. W., Linneberg, Allan René, Jukema, J. W., Khera, A. V., Männikkö, M., Jarvelin, M. R., Kutalik, Z., Francesco, C., Mook-Kanamori, D. O., van Dijk, K. W., Watkins, H., Strachan, D. P., Grarup, Niels, Sever, P., Poulter, N., Chuang, L. M., Rotter, J. I., Dantoft, T. M., Karpe, F., Neville, M. J., Timpson, N. J., Cheng, C. Y., Wong, T. Y., Khor, C. C., Li, H., Sabanayagam, C., Peters, A., Gieger, C., Hattersley, A. T., Pedersen, N. L., Magnusson, P. K. E., Boomsma, D. I., Willemsen, A. H. M., Cupples, L., van Meurs, J. B. J., Ghanbari, M., Gordon-Larsen, P., Huang, W., Kim, Y. J., Tabara, Y., Wareham, N. J., Langenberg, C., Zeggini, E., Kuusisto, J., Laakso, M., Ingelsson, E., Abecasis, G., Chambers, J. C., Kooner, J. S., de Vries, P. S., Morrison, A. C., Hazelhurst, S., Ramsay, M., North, K. E., Daviglus, M., Kraft, P., Martin, N. G., Whitfield, J. B., Abbas, S., Saleheen, D., Walters, R. G., Holmes, M. V., Black, C., Smith, B. H., Baras, A., Justice, A. E., Buring, J. E., Ridker, P. M., Chasman, D. I., Kooperberg, C., Tamiya, G., Yamamoto, M., van Heel, D. A., Trembath, R. C., Wei, W. Q., Jarvik, G. P., Namjou, B., Hayes, M. G., Ritchie, M. D., Jousilahti, P., Salomaa, V., Hveem, K., Åsvold, B. O., Kubo, M., Kamatani, Y., Okada, Y., Murakami, Y., Kim, B. J., Thorsteinsdottir, U., Stefansson, K., Zhang, J., Chen, Y., Ho, Y. L., Lynch, J. A., Rader, D. J., Tsao, P. S., Chang, K. M., Cho, K., O'Donnell, C. J., Gaziano, J. M., Wilson, P. W. F., Frayling, T. M., Hirschhorn, J. N., Kathiresan, S., Mohlke, K. L., Sun, Y. V., Morris, A. P., Boehnke, M., Brown, C. D., Natarajan, P., Deloukas, P., Willer, C. J., Assimes, T. L. & Peloso, G. M., 2022, In: Genome Biology. 23, 1, 42 p., 268.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Immunogenic and protective efficacy of recombinant protein GtxA-N against Gallibacterium anatis challenge in chickens
Pedersen, I. J., Pors, S. E., Skjerning, R. B., Nielsen, Søren Saxmose & Bojesen, Anders Miki, Oct 2015, In: Avian pathology : journal of the W.V.P.A. 44, 5, p. 386-391 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Immunity in the moss Physcomitrella patens
Bressendorff, Simon, 2012, Department of Biology, Faculty of Science, University of Copenhagen.
Research output: Book/Report › Ph.D. thesis › Research
Published
Imaging of DNA Ultrafine Bridges in Budding Yeast
Quevedo Rodriguez, O. & Lisby, Michael, 2018, Genome Instability: Methods and Protocols. Muzi-Falconi, M. & Brown, G. W. (eds.). Humana Press, p. 483-493 11 p. (Methods in Molecular Biology, Vol. 1672).
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
Published
Identifying the Binding Proteins of Small Ligands with the Differential Radial Capillary Action of Ligand Assay (DRaCALA)
Schicketanz, Muriel Leandra, Grucela, Paulina Katarzyna & ZHANG, YONG, 2021, In: Journal of visualized experiments : JoVE. 169, e62331.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Identification of the transporter for the M-factor mating pheromone in fission yeast
Davey, W. J., Christensen, P. U., Nielsen, O. & Nielsen, Olaf, 1 May 1997, In: Biochemical Society Transactions. 25, 2, p. 224S
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Identification of the gene (aroK) encoding shikimic acid kinase I of Escherichia coli
Løbner-Olesen, Anders & Marinus, M. G., Jan 1992, In: Journal of Bacteriology. 174, 2, p. 525-9 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Identification of the archaeal regulatory network in DNA damage response
Feng, X., 2018, Department of Biology, Faculty of Science, University of Copenhagen.
Research output: Book/Report › Ph.D. thesis › Research
Published
Identification of proteins interacting with Arabidopsis ACD11.
Petersen, N. H. T., Joensen, J., McKinney, L. V., Brodersen, P., Petersen, Morten, Hofius, D. & Mundy, J., 2009, In: Journal of Plant Physiology. 166, 6
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Identification of miRNA targets with stable isotope labeling by amino acids in cell culture.
Vinther, Jeppe, Hedegaard, M. M., Gardner, P. P., Andersen, J. S. & Arctander, P., 2006, In: Nucleic Acids Research. 34, 16, p. e107
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Identification of let-7-regulated oncofetal genes.
Boyerinas, B., Park, S., Shomron, N., Hedegaard, M. M., Vinther, Jeppe, Andersen, J. S., Feig, C., Xu, J., Burge, C. B. & Peter, M. E., 2008, In: Cancer Research. 68, 8, p. 2587-91 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Identification and classification of conserved RNA secondary structures in the human genome.
Pedersen, Jakob Skou, Bejerano, G., Siepel, A., Rosenbloom, K., Lindblad-Toh, K., Lander, E. S., Kent, J., Miller, W. & Haussler, D., 2006, In: PLoS Computational Biology. 2, 4, p. e33
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Identification and characterization of barley RNA-directed RNA polymerases
Madsen, C. T., Stephens, J., Hornyik, C., Shaw, J., Collinge, David B., Lacomme, C. & Albrechtsen, M. T., 2009, In: BBA General Subjects. 1789, 5, p. 375-385 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Identification and characterization of a cluster of transcription start sites located in the E6 ORF of human papillomavirus type 16
Rosenstierne, M. W., Vinther, Jeppe, Hansen, C. N., Prydsoe, M. & Norrild, B., 2003, In: Journal of General Virology. 84, Pt 11, p. 2909-20 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Identification and analysis of miRNAs in human breast cancer and teratoma samples using deep sequencing
Nygaard, S., Jacobsen, A., Lindow, M., Eriksen, J., Balslev, E., Flyger, H., Tolstrup, N., Moller, S., Krogh, Anders & Litman, T., 2009, In: B M C Medical Genomics. 2, 1, p. 35
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.
Birney, E., Stamatoyannopoulos, J. A., Dutta, A., Guigó, R., Gingeras, T. R., Margulies, E. H., Weng, Z., Snyder, M., Dermitzakis, E. T., Thurman, R. E., Kuehn, M. S., Taylor, C. M., Neph, S., Koch, C. M., Asthana, S., Malhotra, A., Adzhubei, I., Greenbaum, J. A., Andrews, R. M., Flicek, P. & 36 others, Boyle, P. J., Cao, H., Carter, N. P., Clelland, G. K., Davis, S., Day, N., Dhami, P., Dillon, S. C., Dorschner, M. O., Fiegler, H., Giresi, P. G., Goldy, J., Hawrylycz, M., Haydock, A., Humbert, R., James, K. D., Johnson, B. E., Johnson, E. M., Frum, T. T., Rosenzweig, E. R., Karnani, N., Lee, K., Lefebvre, G. C., Navas, P. A., Neri, F., Parker, S. C. J., Sabo, P. J., Sandstrom, R., Sandelin, Albin Gustav, Pedersen, Jakob Skou, ENCODE Project Consortium, E. P. C., NISC Comparative Sequencing Program, N. C. S. P., Baylor College of Medicine Human Genome Sequencing Center, B. C. O. M. H. G. S. C., Washington University Genome Sequencing Center, W. U. G. S. C., Broad Institute, B. I. & Children's Hospital Oakland Research Institute, C. H. O. R. I., 2007, In: Nature. 447, 7146, p. 799-816 17 p.
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Receptor-like kinase complexes in plant innate immunity
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MAP kinase cascades in Arabidopsis innate immunity
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relax: the analysis of biomolecular kinetics and thermodynamics using NMR relaxation dispersion data
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