Functional Genomics

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1987
Published
Truncated glucagon-like peptide I, an insulin-releasing hormone from the distal gut
Holst, Jens Juul, Ørskov, Cathrine, Nielsen, Olaf & Schwartz, Thue W., 1987, In: F E B S Letters. 211, 2, p. 169-74 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Overproduction of DnaA protein stimulates initiation of chromosome and minichromosome replication in Escherichia coli
Atlung, T., Løbner-Olesen, Anders & Hansen, F. G., Jan 1987, In: Molecular General Genetics. 206, 1, p. 51-9 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Stability and replication control of Escherichia coli minichromosomes
Løbner-Olesen, Anders, Atlung, T. & Rasmussen, K. V., Jun 1987, In: Journal of Bacteriology. 169, 6, p. 2835-42 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
1988
Published
Timing of chromosomal replication in Escherichia coli
Boye, E., Løbner-Olesen, Anders & Skarstad, K., 20 Dec 1988, In: B B A - Reviews on Cancer. 951, 2-3, p. 359-64 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
1989
Published
Antigenic diversity by the recombination of pseudogenes
Thon, Genevieve, Baltz, T. & Eisen, H., 1989, In: Genes & Development. 3, 8, p. 1247-1254 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Genetic selection and DNA sequences of 4.5S RNA homologs
Brown, Stanley, Thon, Genevieve & Tolentino, E., 1989, In: Journal of Bacteriology. 171, 12, p. 6517-20 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mapping the double-strand breaks at the mating-type locus in fission yeast by genomic sequencing
Nielsen, O., Egel, Richard & Nielsen, Olaf, 1 Jan 1989, In: E M B O Journal. 8, 1, p. 269-76 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The DnaA protein determines the initiation mass of Escherichia coli K-12
Løbner-Olesen, Anders, Skarstad, K., Hansen, F. G., von Meyenburg, K. & Boye, E., 2 Jun 1989, In: Cell. 57, 5, p. 881-9 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Initiation of DNA replication in Escherichia coli after overproduction of the DnaA protein
Skarstad, K., Løbner-Olesen, Anders, Atlung, T., von Meyenburg, K. & Boye, E., Jul 1989, In: Molecular General Genetics. 218, 1, p. 50-6 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
1990
Published
Trypanosome variable surface glycoproteins: composite genes and order of expression
Thon, Genevieve, Baltz, T., Giroud, C. & Eisen, H., 1990, In: Genes & Development. 4, 8, p. 1374-1383 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Flow cytometry: illuminating microbiology
Boye, E. & Løbner-Olesen, Anders, Feb 1990, In: The New Biologist. 2, 2, p. 119-25 7 p.
Research output: Contribution to journal › Review › Research › peer-review
Published
The pat1 protein kinase controls transcription of the mating-type genes in fission yeast
Nielsen, O., Egel, Richard & Nielsen, Olaf, 1 May 1990, In: E M B O Journal. 9, 5, p. 1401-6 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The role of dam methyltransferase in the control of DNA replication in E. coli
Boye, E. & Løbner-Olesen, Anders, 7 Sep 1990, In: Cell. 62, 5, p. 981-9 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Escherichia coli minichromosomes: random segregation and absence of copy number control
Jensen, M. R., Løbner-Olesen, Anders & Rasmussen, K. V., 20 Sep 1990, In: Journal of Molecular Biology. 215, 2, p. 257-65 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Sexual differentiation in fission yeast
Egel, Richard, Nielsen, O., Weilguny, D. & Nielsen, Olaf, 1 Nov 1990, In: Trends in Genetics. 6, 11, p. 369-73 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
1991
Published
Analysis of Escherichia coli mutants with altered DNA content
Trun, N. J., Gottesman, S. & Løbner-Olesen, Anders, 1991, In: Cold Spring Harbor Symposia on Quantitative Biology. 56, p. 353-8 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Attachment sites of primary binding proteins L1, L2 and L23 on 23 S ribosomal RNA of Escherichia coli
Egebjerg, J., Christiansen, Jan & Garrett, Roger Antony, 1991, In: Journal of Molecular Biology. 222, 2, p. 251-264
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Insulin-like growth factor II: complexity of biosynthesis and receptor binding
Gammeltoft, S., Christiansen, Jan, Nielsen, F. C. & Verland, S., 1991, In: Advances in Experimental Medicine and Biology. 293, p. 31-44 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Bacterial growth control studied by flow cytometry
Boye, E. & Løbner-Olesen, Anders, 1 Feb 1991, In: Research in Microbiology. 142, 2-3, p. 131-5 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
New vectors in fission yeast: application for cloning the his2 gene
Weilguny, D., Praetorius, M., Carr, A., Egel, Richard, Nielsen, O. & Nielsen, Olaf, 1 Mar 1991, In: Gene. 99, 1, p. 47-54 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Crosslinking of Dam methyltransferase with S-adenosyl-methionine
Wenzel, C., Moulard, M., Løbner-Olesen, Anders & Guschlbauer, W., 11 Mar 1991, In: FEBS Letters. 280, 1, p. 147-51 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Repression of a mating type cassette in the fission yeast by four DNA elements
Ekwall, K., Nielsen, O., Ruusala, T. & Nielsen, Olaf, 1 Oct 1991, In: Yeast. 7, 7, p. 745-55 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
1992
Published
Dam methyltransferase in Escherichia coli: Effects of different enzymatic levels on DNA replication and cell growth
Boye, E., Lyngstadaas, A. & Løbner-Olesen, Anders, 1992, DNA replication: The Regulatory Mechanisms. P., H., E., F. & M, K. (eds.). Springer Verlag, p. 23-35
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
Published
Endonucleolysis in the turnover of insulin-like growth factor II mRNA
Nielsen, F. C. & Christiansen, Jan, 1992, In: Journal of Biological Chemistry. 267, 27, p. 19404-11 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Nucleotide sequence and PCR-amplification of a polymorphic MboI site in human DNA marker D4S95 linked to the Huntington disease locus.
Nørremølle, Anne, Sørensen, S. A. & Arctander, P., 1992, In: Clinical Genetics. 42, p. 210-211 2 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Phylogenetic relationships amongst the hyperthermophilic archae determined from partial 23S rRNA gene sequences
Kjems, J., Larsen, N., Dalgaard, J., Garrett, Roger Antony & Stetter, K. O., 1992, In: Systematic and Applied Microbiology. 15, p. 203-208
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Protein-coding introns from the 23S rRNA-encoding gene form stable circles in the hyperthermophilic archaeon Pyrobaculum organotrophum
Dalgaard, J. & Garrett, Roger Antony, 1992, In: Gene. 121, p. 103-110
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Regulation of DNA replication in Escherichia coli
Boye, E., Lyngstadaas, A., Løbner-Olesen, Anders, Skarstad, K. & Wold, S., 1992, 43 Colloquium Mosbach. Springer Verlag, p. 15-26
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
Published
The clr1 locus regulates the expression of the cryptic mating-type loci of fission yeast
Thon, Genevieve & Klar, A., 1992, In: Genetics. 131, 2, p. 287-296 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Identification of the gene (aroK) encoding shikimic acid kinase I of Escherichia coli
Løbner-Olesen, Anders & Marinus, M. G., Jan 1992, In: Journal of Bacteriology. 174, 2, p. 525-9 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The ras1 function of Schizosaccharomyces pombe mediates pheromone-induced transcription
Nielsen, O., Davey, W. J., Egel, Richard & Nielsen, Olaf, 1 Apr 1992, In: E M B O Journal. 11, 4, p. 1391-5 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Different effects of mioC transcription on initiation of chromosomal and minichromosomal replication in Escherichia coli
Løbner-Olesen, Anders & Boye, E., 25 Jun 1992, In: Nucleic Acids Research. 20, 12, p. 3029-36 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Expression of the Escherichia coli dam gene
Løbner-Olesen, Anders, Boye, E. & Marinus, M. G., Jul 1992, In: Molecular Microbiology. 6, 13, p. 1841-51 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Functional conservation between Schizosaccharomyces pombe ste8 and Saccharomyces cerevisiae STE11 protein kinases in yeast signal transduction
Styrkársdóttir, U., Egel, Richard, Nielsen, O. & Nielsen, Olaf, 1 Oct 1992, In: Molecular and General Genetics MGG. 235, 1, p. 122-30 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Chromosome partitioning in Escherichia coli
Løbner-Olesen, Anders & Kuempel, P. L., Dec 1992, In: Journal of Bacteriology. 174, 24, p. 7883-9 7 p.
Research output: Contribution to journal › Review › Research › peer-review
1993
Published
A site-specific endonuclease encoded by a typical archaeal intron.
Dalgaard, J., Garrett, Roger Antony & Belfort, M., 1993, In: Proceedings of the National Academy of Science of the United States of America. 90, 12, p. 5414-5417
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Biosynthesis of 10 kDa and 7.5 kDa insulin-like growth factor II in a human rhabdomyosarcoma cell line
Nielsen, F. C., Haselbacher, G., Christiansen, Jan, Lake, M., Gammeltoft, S. & Grønborg, M., 1993, In: Molecular and Cellular Endocrinology. 93, 1, p. 87-95 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Comparative sequence analysis of cis elements present in Glycine max L. leghemoglobin lba and lbc3 genes
She, Q., Sandal, N. N., Stougaard, J. & Marcker, K. A., 1993, In: Plant Molecular Biology. 22, 5, p. 931-5 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Directionality of fission yeast mating-type interconversion is controlled by the location of the donor loci
Thon, Genevieve, 1993, In: Genetics. 134, 4, p. 1045-1054 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Minimal enhancer elements of the leghemoglobin lba and lbc3 gene promoters from Glycine max L. have different properties
She, Q., Lauridsen, P., Stougaard, J. & Marcker, K. A., 1993, In: Plant Molecular Biology. 22, 6, p. 945-56 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Transposon tagging and gene targeting in Lotus japonicus
Handberg, K., Thykjaer, T., Stiller, J., She, Q. & Stougaard, J., 1993, Current Plant Science and Biotechnology in Agriculture; New horizons in nitrogen fixation (R. Palacios, J. Mora W. E. Newton eds). p. 342 1 p.
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
Published
Signal transduction during mating and meiosis in S. pombe
Nielsen, O. & Nielsen, Olaf, 1 Feb 1993, In: Trends in Cell Biology. 3, 2, p. 60-5 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The smt-0 mutation which abolishes mating-type switching in fission yeast is a deletion
Styrkársdóttir, U., Egel, Richard, Nielsen, O. & Nielsen, Olaf, 1 Feb 1993, In: Current Genetics. 23, 2, p. 184-6 3 p.
Research output: Contribution to journal › Journal article › Research › peer-review
1994
Published
A guanosine quadruplex and two stable hairpins flank a major cleavage site in insulin-like growth factor II mRNA
Christiansen, Jan, Kofod, M. & Nielsen, F. C., 1994, In: Nucleic Acids Research. 22, 25, p. 5709-16 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Archaeal rRNA operons, intron splicing and homing endonucleases, RNA polymerase operons and phylogeny
Garrett, Roger Antony, Aagaard, C. S., Andersen, M., Dalgaard, J., Lykke-Andersen, J., Phan, H. T. N., Trevisanato, S., Østergaard, L., Larsen, N. & Leffers, H., 1994, In: Systematic and Applied Microbiology. 16, 4, p. 680-691
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Insulin-like growth factor II mRNA, peptides, and receptors in a thoracopulmonary malignant small round cell tumor
Nielsen, F. C., Orskov, C., Haselbacher, G., Ramlau, J., Christiansen, Jan, Schmiegelow, Kjeld & Rehfeld, Jens Frederik, 1994, In: Cancer. 73, 4, p. 1312-9 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Purification and characterization of two forms of I-DmoI, a thermophilic site-specific endonucleose encoded by an archaeal intron
Dalgaard, J., Garrett, Roger Antony & Belfort, M., 1994, In: Journal of Biological Chemistry. Vol 269, p. 28885-28892
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Three additional linkage groups that repress transcription and meiotic recombination in the mating-type region of Schizosaccharomyces pombe
Thon, Genevieve, Cohen, A. & Klar, A., 1994, In: Genetics. 138, 1, p. 29-38 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Analysis of the structural genes encoding M-factor in the fission yeast Schizosaccharomyces pombe: identification of a third gene, mfm3
Kjaerulff, S., Davey, W. J., Nielsen, O. & Nielsen, Olaf, 1 Jun 1994, In: Molecular and Cellular Biology. 14, 6, p. 3895-905 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mutations in cyr1 and pat1 reveal pheromone-induced G1 arrest in the fission yeast Schizosaccharomyces pombe
Davey, W. J., Nielsen, O. & Nielsen, Olaf, 1 Aug 1994, In: Current Genetics. 26, 2, p. 105-12 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Assessment of pheromone production and response in fission yeast by a halo test of induced sporulation
Egel, Richard, Willer, M., Kjaerulff, S., Davey, W. J., Nielsen, O. & Nielsen, Olaf, 1 Oct 1994, In: Yeast. 10, 10, p. 1347-54 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
1995
Published
Distribution of mtDNA haplotypes in North Atlantic humpback whales: the influence of behaviour on population structure
Palsbøll, P. J., Clapham, P. K., Mattila, D. K., Larsen, F., Sears, R., Siegismund, Hans Redlef & Arctander, P., 1995, In: Marine Ecology - Progress Series. 116
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Does DAPI detect cytoplasmic DNA?
Johansen, B. B., Seberg, Ole, Petersen, G. & Arctander, P., 1995, In: American Journal of Botany. 82, 10, p. 1215-1219
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Pheromone communication in the fission yeast Schizosaccharomyces pombe
Nielsen, O., Davey, W. J. & Nielsen, Olaf, 1 Apr 1995, In: Seminars in Cell Biology. 6, 2, p. 95-104 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Characterization of three genes in the dam-containing operon of Escherichia coli
Lyngstadaas, A., Løbner-Olesen, Anders & Boye, E., 10 Jun 1995, In: Molecular General Genetics. 247, 5, p. 546-54 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Characterization of fus1 of Schizosaccharomyces pombe: a developmentally controlled function needed for conjugation
Petersen, J., Weilguny, D., Egel, Richard, Nielsen, O. & Nielsen, Olaf, 1 Jul 1995, In: Molecular and Cellular Biology. 15, 7, p. 3697-707 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Two-step activation of meiosis by the mat1 locus in Schizosaccharomyces pombe
Willer, M., Hoffmann, U., Styrkársdóttir, U., Egel, Richard, Davey, W. J., Nielsen, O. & Nielsen, Olaf, 1 Sep 1995, In: Molecular and Cellular Biology. 15, 9, p. 4964-70 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
1996
Published
Extreme genetic differences among populations of Gazella granti, Grant's gazelle in Kenya
Arctander, P., Kat, P. W., Aman, R. A. & Siegismund, Hans Redlef, 1996, In: Heredity. 76 ( Pt 5), p. 465-75 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Population genetics of Kenyan impalas–consequences for conservation
Arctander, P., Kat, P. W., Aman, R. A. & Siegismund, Hans Redlef, 1996, Molecular Genetic Approaches in Conservation. Smith, T. B. & Wayne, R. K. (eds.). Oxford: Oxford University Press, p. 399-412
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
Published
Structure and organ specificity of an anionic peroxidase from Arabidopsis thaliana cell suspension culture
Ostergaard, L., Abelskov, A. K., Mattsson, O. & Welinder, K. G., 1996, In: FEBS Letters. 398, 2-3, p. 243-7 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Structure of African elephant populations
Siegismund, Hans Redlef & Arctander, P., 1996, In: Journal of Heredity. 86, 6, p. 467-9 2 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The sxa2-dependent inactivation of the P-factor mating pheromone in the fission yeast Schizosaccharomyces pombe
Ladds, G., Rasmussen, E. M., Young, T., Nielsen, O., Davey, W. J. & Nielsen, Olaf, 1 Apr 1996, In: Molecular Microbiology. 20, 1, p. 35-42 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
A sparsomycin-resistant mutant of Halobacterium salinarium lacks a modification at nucleotide U2603 in the peptidyl transferase centre of 23 S rRNA
Lázaro, E., Rodriguez-Fonseca, C., Porse, Bo Torben, Ureña, D., Garrett, Roger Antony & Ballesta, J. P. G., 16 Aug 1996, In: Journal of Molecular Biology. 261, 2, p. 231-238 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The Schizosaccharomyces pombe map1 gene encodes an SRF/MCM1-related protein required for P-cell specific gene expression
Nielsen, O., Friis, T., Kjaerulff, S. & Nielsen, Olaf, 13 Dec 1996, In: Molecular and General Genetics MGG. 253, 3, p. 387-92 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
1997
Published
Organization and expression of genes in the genomic region surrounding the glutamine synthetase gene Gln1 from Lotus japonicus
Thykjaer, T., Danielsen, D., She, Q. & Stougaard, J., 1997, In: Molecular Genetics and Genomics. 255, 6, p. 628-36 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Abc1: a new ABC transporter from the fission yeast Schizosaccharomyces pombe
Christensen, P. U., Davis, K., Nielsen, O., Davey, W. J. & Nielsen, Olaf, 1 Feb 1997, In: F E M S Microbiology Letters. 147, 1, p. 97-102 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Identification of the transporter for the M-factor mating pheromone in fission yeast
Davey, W. J., Christensen, P. U., Nielsen, O. & Nielsen, Olaf, 1 May 1997, In: Biochemical Society Transactions. 25, 2, p. 224S
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The Schizosaccharomyces pombe mam1 gene encodes an ABC transporter mediating secretion of M-factor
Christensen, P. U., Davey, W. J., Nielsen, O. & Nielsen, Olaf, 1 Jun 1997, In: Molecular and General Genetics MGG. 255, 2, p. 226-36 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Cell differentiation by interaction of two HMG-box proteins: Mat1-Mc activates M cell-specific genes in S.pombe by recruiting the ubiquitous transcription factor Ste11 to weak binding sites
Kjaerulff, S., Dooijes, D., Clevers, H., Nielsen, O. & Nielsen, Olaf, 1 Jul 1997, In: E M B O Journal. 16, 13, p. 4021-33 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
1998
Published
A novel esterase from Saccharomyces carlsbergensis, a possible function for the yeast TIP1 gene
Horsted, M. W., Dey, E. S., Holmberg, Steen & Kielland-Brandt, M. C., 1998, In: Yeast. 14, 9, p. 793-803 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Datin, a yeast poly(dA:dT)-binding protein, behaves as an activator of the wild-type ILV1 promoter and interacts synergistically with Reb1p
Moreira, José, Remacle, J. E., Kielland-Brandt, M. & Holmberg, Steen, 1998, In: Molecular and General Genetics. 258, 1-2, p. 95-103 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Nucleosome structure of the yeast CHA1 promoter: analysis of activation-dependent chromatin remodeling of an RNA-polymerase-II-transcribed gene in TBP and RNA pol II mutants defective in vivo in response to acidic activators
Moreira, José & Holmberg, Steen, 1998, In: E M B O Journal. 17, 20, p. 6028-38 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Population structure of African buffalo inferred from mtDNA sequences and microsatellite loci: high variation but low differentiation
Simonsen, Bo Thisted, Siegismund, Hans Redlef & Arctander, P., 1998, In: Molecular Ecology. 7, 2, p. 225-37 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The role of caspase 3 and BclxL in the action of interleukin 7 (IL-7): a survival factor in activated human T cells
Amos, C. L., Woetmann, Anders , Nielsen, M., Geisler, Carsten, Odum, N., Brown, B. L. & Dobson, P. R., 1998, In: Cytokine. 10, 9, p. 662-8 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
F-actin distribution and function during sexual differentiation in Schizosaccharomyces pombe
Petersen, J., Nielsen, O., Egel, Richard, Hagan, I. M. & Nielsen, Olaf, 1 Apr 1998, In: Journal of Cell Science. 111 ( Pt 7), p. 867-76 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
FH3, a domain found in formins, targets the fission yeast formin Fus1 to the projection tip during conjugation
Petersen, J., Nielsen, O., Egel, Richard, Hagan, I. M. & Nielsen, Olaf, 1 Jun 1998, In: Journal of Cell Biology. 141, 5, p. 1217-28 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Alcoholysis and strand joining by the Flp site-specific recombinase: Mechanistically equivalent reactions mediated by distinct catalytic configurations
Knudsen, B. R., Lee, J., Lisby, Michael, Westergaard, O. & Jayaram, M., 21 Aug 1998, In: Journal of Biological Chemistry. 273, 34, p. 22028-22036 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The RNA-splicing factor PSF/p54(nrb) controls DNA-topoisomerase I activity by a direct interaction
Straub, T., Grue, P., Uhse, A., Lisby, Michael, Knudsen, B. R., Tange, T., Westergaard, O. & Boege, F., 9 Oct 1998, In: Journal of Biological Chemistry. 273, 41, p. 26261-26264 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
1999
Published
Diversity of Holocene life forms in fossil glacier ice
Willerslev, Eske, Hansen, Anders Johannes, Christensen, B., Steffensen, Jørgen Peder & Arctander, P., 1999, In: Proceedings of the National Academy of Science of the United States of America. 96, 14, p. 8017-21
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Inhibition of constitutively activated Stat3 correlates with altered Bcl-2/Bax expression and induction of apoptosis in mycosis fungoides tumor cells
Nielsen, M., Kaestel, C. G., Eriksen, K. W., Woetmann, Anders , Stokkedal, T., Kaltoft, K., Geisler, Carsten, Röpke, C. & Odum, N., 1999, In: Leukemia. 13, 5, p. 735-8 3 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Inhibition of protein phosphatase 2A induces serine/threonine phosphorylation, subcellular redistribution, and functional inhibition of STAT3
Woetmann, Anders , Nielsen, M., Christensen, S. T., Brockdorff, J., Kaltoft, K., Engel, A. M., Skov, S., Brender, C., Geisler, Carsten, Svejgaard, A., Rygaard, J., Leick, V. & Odum, N., 1999, In: Proceedings of the National Academy of Science of the United States of America. 96, 19, p. 10620-5 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mutations that cause threonine sensitivity identify catalytic and regulatory regions of the aspartate kinase of Saccharomyces cerevisiae
Arévalo-Rodríguez, M., Calderón, I. L. & Holmberg, Steen, 1999, In: Yeast. 15, 13, p. 1331-45 14 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Overexpression of putative NADH oxidases from the hyperthermophilic archaeons Sulfolobus solfataricus and Pyrococcus horikoshii
Crane III, E. J., Ward, D. E., van der Oost, J., She, Q. & Garrett, Roger Antony, 1999, Flavins and Flavoproteins 1999 (Ghisla, S., Kroneck, P., Macheroux, P., and Sund, H. ed.). Berlin, p. 281-284 4 p.
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
Published
The antibiotic micrococcin acts on protein L11 at the ribosomal GTPase centre.
Porse, Bo Torben, Cundliffe, E. & Garrett, Roger Antony, 1999, In: Journal of Molecular Biology. 287, 1, p. 33-45 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Transcriptional repression of the yeast CHA1 gene requires the chromatin-remodeling complex RSC
Moreira, José & Holmberg, Steen, 1999, In: E M B O Journal. 18, 10, p. 2836-44 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Yeast transcriptional regulator Leu3p: Self-masking, specificity of masking, and evidence for regulation by the intracellular level of Leu3p
Wang, D., Zheng, F., Holmberg, Steen & Kohlhaw, G. B., 1999, In: The Journal of Biological Chemistry. 274 (27), p. 19017-19024
Research output: Contribution to journal › Journal article › Research
Published
Substrate specificity and gene expression of the amino acid permeases in Saccharomyces cerevisiae
Regenberg, Birgitte, Düring-Olsen, L., Kielland-Brandt, M. C. & Holmberg, Steen, 1 Jan 1999, In: Current Genetics. 36, 6, p. 317-328 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
2000
Published
Arabidopsis MAP Kinase 4 Negatively Regulates Systemic Acquired Resistance
Petersen, Morten, Brodersen, P., Naested, H., Andreasson, E., Lindhart, U., Johansen, B., Nielsen, H. B., Lacy, M., Austin, M. J., Parker, J. E., Sharma, S. B., Klessig, D. F., Martienssen, R., Mattsson, O., Jensen, A. B. & Mundy, J. W., 2000, In: Gekkan Saibo. 103, 7, p. 1111-1120
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Arabidopsis ATP A2 peroxidase. Expression and high-resolution structure of a plant peroxidase with implications for lignification.
Ostergaard, L., Teilum, Kaare, Mirza, Osman Asghar, Mattsson, O., Petersen, M., Welinder, K. G., Mundy, J., Gajhede, Michael & Henriksen, A., 2000, In: Plant Molecular Biology. 44, 2, p. 231-43 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mik1 levels accumulate in S phase and may mediate an intrinsic link between S phase and mitosis
Christensen, P. U., Bentley, N. J., Martinho, R. G., Nielsen, O., Carr, A. & Nielsen, Olaf, 14 Mar 2000, In: Proceedings of the National Academy of Sciences of the United States of America. 97, 6, p. 2579-84 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Frequent disruption of the RB1 pathway in diffuse large B cell lymphoma: prognostic significance of E2F-1 and p16INK4A
Møller, M. B., Kania, Per, Ino, Y., Gerdes, Anne-Marie Axø, Nielsen, Olaf, Louis, D. N., Skjødt, K. & Pedersen, N. T., May 2000, In: Leukemia. 14, 5, p. 898-904 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Arabidopsis ATP A2 peroxidase. Expression and high-resolution structure of a plant peroxidase with implications for lignification.
Petersen, Morten, Sep 2000, In: Plant Molecular Biology.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Sequence-specific high mobility group box factors recognize 10-12-base pair minor groove motifs
van Beest, M., Dooijes, D., van De Wetering, M., Kjaerulff, S., Bonvin, A., Nielsen, O., Clevers, H. & Nielsen, Olaf, 1 Sep 2000, In: Journal of Biological Chemistry. 275, 35, p. 27266-73 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
2001
Published
Analysis of Schizosaccharomyces pombe mediator reveals a set of essential subunits conserved between yeast and metazoan cells
Spåhr, H., Samuelsen, C. O., Baraznenok, V., Ernest, I., Huylebroeck, D., Remacle, J. E., Samuelsson, T., Kieselbach, T., Holmberg, Steen & Gustafsson, C. M., 2001, In: Proceedings of the National Academy of Science of the United States of America. 98, 21, p. 11985-11990 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Control of specific gene expression by gibberellin and brassinosteroid
Bouquin, T., Meier, C., Foster, R., Nielsen, Mads Eggert & Mundy, J., 2001, In: Plant Physiology.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Gibberellin response mutants identified by luciferase imaging
Meier, C., Bouquin, T., Nielsen, Mads Eggert, Raventos, D., Mattsson, O., Rocher, A., Schomburg, F., Amasino, R. & Mundy, J., 2001, In: Plant Journal.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Neither Reb1p nor poly(dA*T) elements are responsible for the highly specific chromatin organization at the ILV1 promoter
Moreira, José, Hörz, W. & Holmberg, Steen, 2001, In: Journal of Biological Chemistry. 277, 5, p. 3202-9 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Origins of the many NPY-family receptors in mammals
Larhammar, D., Wraith, A., Berglund, M. M., Holmberg, Steen & Lundell, I., 2001, In: Peptides. 22, 3, p. 295-307 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Statistical evidence for miscoding lesions in ancient DNA templates
Hansen, Anders Johannes, Willerslev, Eske, Wiuf, C., Mourier, T. & Arctander, P., 2001, In: Molecular Biology and Evolution. 18, 2, p. 262-65 4 p.
Research output: Contribution to journal › Letter › Research
Published
Two differentially regulated Arabidopsis genes define a new branch of the DFR superfamily.
Østergaard, L., Lauvergeat, V., Naested, H., Mattsson, O. & Mundy, J., 2001, In: Plant Science. 160, 3, p. 463-472 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Inhibition of Flp Recombinase by the Topoisomerase I-targeting Drugs, Camptothecin and NSC-314622
From Frøhlich, R., Hansen, S. G., Lisby, Michael, Grainge, I., Westergaard, O., Jayaram, M. & Knudsen, B. R., 9 Mar 2001, In: Journal of Biological Chemistry. 276, 10, p. 6993-6997 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Residues Within the N-terminal Domain of Human Topoisomerase I Play a Direct Role in Relaxation
Lisby, Michael, Olesen, J. R., Skouboe, C., Krogh, B. O., Straub, T., Boege, F., Velmurugan, S., Martensen, P. M., Andersen, A. H., Jayaram, M., Westergaard, O. & Knudsen, B. R., 8 Jun 2001, In: Journal of Biological Chemistry. 276, 23, p. 20220-20227 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Rad52 forms DNA repair and recombination centers during S phase
Lisby, Michael, Rothstein, R. & Mortensen, U. H., 17 Jul 2001, In: Proceedings of the National Academy of Sciences of the United States of America. 98, 15, p. 8276-8282 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
7. Proprioceptive evoked potentials (PEP) in man: Cerebral responses of changing weight loads on the hand
Arnfred, Sidse Marie , CHEN, Ao, Eder, D. N., Glenthøj, Birte Yding & Hemmingsen, Ralf Peter, Oct 2001, In: Brain and Cognition. 47, 1-2, p. 54-57 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
2002
Published
An Arabidopsis callose synthase.
Ostergaard, L., Petersen, Morten, Mattsson, O. & Mundy, J., 2002, In: Plant Molecular Biology. 49, 6, p. 559-566 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
An exceptional case of historical outbreeding in African sable antelope populations
Pitra, C., Hansen, Anders Johannes, Lieckfeldt, D. & Arctander, P., 2002, In: Molecular Ecology. 11, 7, p. 1197-208
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Cloning-free genome alterations in Saccharomyces cerevisiae using adaptamer-mediated PCR
Reid, R. J. D., Lisby, Michael & Rothstein, R., 2002, In: Methods in Enzymology. 350, p. 258-77 20 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Knockout of Arabidopsis accelerated-cell-death11 encoding a sphingosine transfer protein causes activation of programmed cell death and defense.
Brodersen, P., Petersen, Morten, Pike, H. M., Olszak, B., Skov, Søren, Odum, N., Jørgensen, L. B., Brown, R. E. & Mundy, J., 2002, In: Genes & Development. 16, 4, p. 490-502 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
MAP-kinaser--molekylaere transistorer i dyr og planter.
Petersen, Morten, Brodersen, P. & Mundy, J., 2002, In: Ugeskrift for læger. 164, 24, p. 3184-8 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Population structure of the African savannah elephant inferred from mitochondrial control region sequences and nuclear microsatellite loci
Nyakaana, S., Arctander, P. & Siegismund, Hans Redlef, 2002, In: Heredity. 89, 2, p. 90-8 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Protein phosphatase 2A (PP2A) regulates interleukin-4-mediated STAT6 signaling
Woetmann, Anders , Brockdorff, J., Lovato, P., Nielsen, M., Leick, V., Rieneck, K., Svejgaard, A., Geisler, Carsten & Ødum, Niels, 2002, In: Journal of Biological Chemistry. 278, 5, p. 2787-91 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
SHP2 regulates IL-2 induced MAPK activation, but not Stat3 or Stat5 tyrosine phosphorylation, in cutaneous T cell lymphoma cells
Lundin Brockdorff, J., Woetmann, Anders , Mustelin, T., Kaltoft, K., Zhang, Q., Wasik, M. A., Röpke, C. & Ødum, Niels, 2002, In: Cytokine. 20, 4, p. 141-7 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The fission yeast ubiquitin-conjugating enzymes UbcP3, Ubc15, and Rhp6 affect transcriptional silencing of the mating-type region
Nielsen, I. S., Nielsen, Olaf, Murray, J. M. & Thon, Genevieve, 1 Aug 2002, In: Eukaryotic Cell (Online Edition). 1, 4, p. 613-25 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
2003
Published
A promoter within the E6 ORF of human papillomavirus type 16 contributes to the expression of the E7 oncoprotein from a monocistronic mRNA
Glahder, J. H., Hansen, C. N., Vinther, Jeppe, Madsen, B. S. & Norrild, B., 2003, In: Journal of General Virology. 84, Pt 12, p. 3429-41 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
AFV1, a novel virus infecting hyperthermophilic archaea of the genus Acidianus.
Bettstetter, M., Peng, Xu & Garrett RA, Prangishvili D., G. R. P. D., 2003, In: Virology.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Bi-phasic effect of interferon (IFN)-alpha: IFN-alpha up- and down-regulates interleukin-4 signaling in human T cells
Eriksen, K. W., Sommer, V. H., Woetmann, Anders , Rasmussen, A. B., Brender, C., Svejgaard, A., Skov, Søren, Geisler, Carsten & Ødum, Niels, 2003, In: Journal of Biological Chemistry. 279, 1, p. 169-76 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Constitutive STAT3 activation in intestinal T cells from patients with Crohn's disease
Lovato, P., Brender, C., Agnholt, J., Kelsen, J., Kaltoft, K., Svejgaard, A., Eriksen, K. W., Woetmann, Anders & Ødum, Niels, 2003, In: Journal of Biological Chemistry. 278, 19, p. 16777-81 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Gene finding with a hidden Markov model of genome structure and evolution.
Pedersen, J. S. & Hein, J., 2003, In: Bioinformatics. 19, 2, p. 219-27 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Genus-specific protein binding to the large clusters of DNA repeats (short regularly spaced repeats) present in Sulfolobus genomes
Peng, Xu, Brügger, K., Shen, B., Chen, L., She, Q. & Garrett, Roger Antony, 2003, In: Journal of Bacteriology. 185, 8, p. 2410-7 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Identification and characterization of a cluster of transcription start sites located in the E6 ORF of human papillomavirus type 16
Rosenstierne, M. W., Vinther, Jeppe, Hansen, C. N., Prydsoe, M. & Norrild, B., 2003, In: Journal of General Virology. 84, Pt 11, p. 2909-20 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Plants flex their skeletons.
Foster, R., Mattsson, O. & Mundy, J., 2003, In: Trends in Plant Science. 8, 5, p. 202-4 2 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Relationships between fuselloviruses infecting the extremely thermophilic archaeon Sulfolobus: SSV1 and SSV2
Stedman, K. M., She, Q., Phan, H., Arnold, H. P., Holz, I., Garrett, Roger Antony & Zillig, W., 2003, In: Research in Microbiology. 154, 4, p. 295-302 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
TRAP230/ARC240 and TRAP240/ARC250 Mediator subunits are functionally conserved through evolution
Samuelsen, C. O., Baraznenok, V., Khorosjutina, O., Spahr, H., Kieselbach, T., Holmberg, Steen & Gustafsson, C. M., 2003, In: Proceedings of the National Academy of Science of the United States of America. 100, 11, p. 6422-6427 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The Arabidopsis lue1 mutant defines a katanin p60 ortholog involved in hormonal control of microtubule orientation during cell growth.
Bouquin, T., Mattsson, O., Naested, H., Foster, R. & Mundy, J., 2003, In: Journal of Cell Science. 116, Pt 5, p. 791-801 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
A human topoisomerase IIα heterodimer with only one ATP binding site can go through successive catalytic cycles
Skouboe, C., Bjergbaek, L., Østergaard, Vibe Hallundbæk, Larsen, M. K., Knudsen, B. R. & Andersen, A. H., 21 Feb 2003, In: Journal of Biological Chemistry. 278, 8, p. 5768-5774 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Colocalization of multiple DNA double-strand breaks at a single Rad52 repair centre
Lisby, Michael, Mortensen, U. H. & Rothstein, R., Jun 2003, In: Nature Cell Biology. 5, 6, p. 572-7 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
COP9 signalosome: a provider of DNA building blocks
Nielsen, Olaf, 15 Jul 2003, In: Current Biology. 13, 14, p. R565-7
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Cell cycle-regulated centers of DNA double-strand break repair
Lisby, Michael, Antúnez de Mayolo, A., Mortensen, U. H. & Rothstein, R., 10 Sep 2003, In: Cell Cycle. 2, 5, p. 479-83 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
2004
Published
Arabidopsis VARIEGATED 3 encodes a chloroplast-targeted, zinc-finger protein required for chloroplast and palisade cell development
Næsted, H., Holm, A., Jenkins, T., Nielsen, H. B., Harris, C. A., Beale, M. H., Andersen, M., Mant, A., Scheller, H. V., Camara, B., Mattsson, O. & Mundy, J., 2004, In: Journal of Cell Science. 117, 20, p. 4807-18 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
A Unified Nomenclature for Protein Subunits of Mediator Complexes Linking Transcriptional Regulators to RNA Polymerase II
Bourbon, H. M., Aguilera, A., Ansari, A. Z., Asturias, F. J., Berk, A. J., Bjorklund, S., Blackwell, T. K., Borggrefe, T., Carey, M., Carlson, M., Conaway, J. W., Conaway, R. C., Emmons, S. W., Fondell, J. D., Freedman, L. P., Fukasawa, T., Gustafsson, C. M., Han, M., He, X., Herman, P. K. & 27 others, Hinnebusch, A. G., Holmberg, Steen, Holstege, F. C., Jaehning, J. A., Kim, Y., Kuras, L., Leutz, A., Lis, J. T., Meisterernest, M., Naar, A. M., Nasmyth, K., Parvin, J. D., Ptashne, M., Reinberg, D., Ronne, H., Sadowski, I., Sakurai, H., Sipiczki, M., Sternberg, P. W., Stillman, D. J., Strich, R., Struhl, K., Svejstrup, J. Q., Tuck, S., Winston, F., Roeder, R. G. & Kornberg, R. D., 2004, In: Molecular Cell. 14, 5, p. 553-557
Research output: Contribution to journal › Journal article › Research › peer-review
Published
A comparative method for finding and folding RNA secondary structures within protein-coding regions.
Pedersen, J. S., Meyer, I. M., Forsberg, R., Simmonds, P. & Hein, J., 2004, In: Nucleic Acids Research. 32, 16, p. 4925-36 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
A novel type of silencing factor, Clr2, is necessary for transcriptional silencing at various chromosomal locations in the fission yeast Schizosaccharomyces pombe
Bjerling, P., Ekwall, K., Egel, Richard & Thon, Genevieve, 2004, In: Nucleic Acids Research. 32, 15, p. 4421-8 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
An evolutionary model for protein-coding regions with conserved RNA structure.
Pedersen, J. S., Forsberg, R., Meyer, I. M. & Hein, J., 2004, In: Molecular Biology and Evolution. 21, 10, p. 1913-22 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Computational method for discovery of estrogen responsive genes.
Tang, S., Tan, S. L., Ramadoss, S. K., Kumar, A. P., Tang, M. E. & Bajic, V. B., 2004, In: Nucleic Acids Research. 32, 21, p. 6212-7 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
DNA repair: keeping it together.
Lisby, Michael & Rothstein, R., 2004, In: Current Biology. 14, 23, p. R994-6
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Exceptionally diverse morphotypes and genomes of crenarchaeal hyperthermophilic viruses
Prangishvili, D. & Garrett, Roger Antony, 2004, In: Biochemical Society Transactions. 32, Pt 2, p. 204-8 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Genomic comparison of archaeal conjugative plasmids from Sulfolobus
Greve, B., Jensen, S., Brügger, K., Zillig, W. & Garrett, Roger Antony, 2004, In: Archaea. Vol. 1., p. 231-239
Research output: Contribution to journal › Journal article › Research › peer-review
Published
In vivo activation of STAT3 in cutaneous T-cell lymphoma. Evidence for an antiapoptotic function of STAT3.
Sommer, V. H., Clemmensen, O. J., Nielsen, O., Wasik, M., Lovato, P., Brender, C., Eriksen, K. W., Woetmann, Anders , Kaestel, C. G., Nissen, Mogens Holst, Ropke, C., Skov, Søren & Ødum, Niels, 2004, In: Leukemia. 18, 7, p. 1288-95 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Morphology and genome organisation of the virus PSV of the hyperthermophilic archaeal genera Pyrobaculum and Thermoproteus: A novel virus family, the Globuloviridae
Häring , M., Peng, Xu & Brugger K., Rachel R., Stetter K.O., Garrett R.A.,Prangishvili D., B. K. ,. R. R. ,. S. K. O. ,. G. R. A. ,. D., 2004, In: Virology.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The fission yeast heterochromatin protein Rik1 is required for telomere clustering during meiosis
Tuzon, C. T., Borgstrøm, B., Weilguny, D., Egel, Richard, Cooper, J. P. & Nielsen, Olaf, 2004, In: Journal of Cell Biology. 165, 6, p. 759-65 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The Transducer Domain Is Important for Clamp Operation in Human DNA Topoisomerase IIα
Østergaard, Vibe Hallundbæk, Bjergbaek, L., Skouboe, C., Giangiacomo, L., Knudsen, B. R. & Andersen, A. H., 16 Jan 2004, In: Journal of Biological Chemistry. 279, 3, p. 1684-1691 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
DNA repair
Fleck, O. & Nielsen, Olaf, 1 Feb 2004, In: Journal of Cell Science. 117, Pt 4, p. 515-7 3 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Key role of Ser562/661 in Snf1-dependent regulation of Cat8p in Saccharomyces cerevisiae and Kluyveromyces lactis
Charbon, Godefroid, Breunig, K. D., Wattiez, R., Vandenhaute, J. & Noël-Georis, I., May 2004, In: Molecular and Cellular Biology. 24, 10, p. 4083-91 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
DNA damage checkpoint and repair centers
Lisby, Michael & Rothstein, R., Jun 2004, In: Current Opinion in Cell Biology. 16, 3, p. 328-34 7 p.
Research output: Contribution to journal › Review › Research › peer-review
Published
Transcriptional profiling of extracellular amino acid sensing in Saccharomyces cerevisiae and the role of Stp 1 p and Stp2p
Eckert-Boulet, N., Nielsen, P. S., Friis, Carsten, Moreira dos Santos, M., Nielsen, J., Kielland-Brandt, M. C. & Regenberg, Birgitte, 1 Jun 2004, In: Yeast. 21, 8, p. 635-648 14 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Dissecting the cell-killing mechanism of the topoisomerase II-targeting drug ICRF-193
Østergaard, Vibe Hallundbæk, Knudsen, B. R. & Andersen, A. H., 2 Jul 2004, In: Journal of Biological Chemistry. 279, 27, p. 28100-28105 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Hindering the strand passage reaction of human topoisomerase IIα without disturbing DNA cleavage, ATP hydrolysis, or the operation of the N-terminal clamp
Østergaard, Vibe Hallundbæk, Giangiacomo, L., Bjergbaek, L., Knudsen, B. R. & Andersen, A. H., 2 Jul 2004, In: Journal of Biological Chemistry. 279, 27, p. 28093-28099 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Choreography of the DNA damage response: spatiotemporal relationships among checkpoint and repair proteins
Lisby, Michael, Barlow, J. H., Burgess, R. C. & Rothstein, R., 17 Sep 2004, In: Cell. 118, 6, p. 699-713 15 p.
Research output: Contribution to journal › Journal article › Research › peer-review
2005
Published
A novel rudivirus, ARV1, of the hyperthermophilic archaeal genus Acidianus
Vestergaard, G. A., Häring, M., Peng, Xu, Rachel, R., Garrett, Roger Antony & Prangishvili, D., 2005, In: Virology. 336, 1, p. 83-92 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Beringian paleoecology inferred from permafrost-preserved fungal DNA
Lydolph, M. C., Jacobsen, J., Arctander, P., Gilbert, M Thomas P, Gilichinsky, D. A., Hansen, Anders Johannes, Willerslev, Eske & Lange, L., 2005, In: Applied and Environmental Microbiology. 71, 2, p. 1012-7 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Brh2-Dss1 interplay enables properly controlled recombination in Ustilago maydis.
Kojic, M., Zhou, Q., Lisby, Michael & Holloman, W. K., 2005, In: Molecular and Cellular Biology. 25, 7, p. 2547-57 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Cancer cells become susceptible to natural killer cell killing after exposure to histone deacetylase inhibitors due to glycogen synthase kinase-3-dependent expression of MHC class I-related chain A and B
Skov, Søren, Pedersen, M. T., Andresen, Lars, Straten, P. T., Woetmann, Anders & Ødum, Niels, 2005, In: Cancer Research. 65, 23, p. 11136-45 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Conditional E2F1 activation in transgenic mice causes testicular atrophy and dysplasia mimicking human CIS.
Agger, K., Santoni Rugiu, Eric, Holmberg, Christian, Karlström, O. & Helin, K., 2005, In: Oncogene. 24, 5, p. 780-9 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Constitutive SOCS-3 expression protects T-cell lymphoma against growth inhibition by IFNalpha
Brender, C., Lovato, P., Sommer, V. H., Woetmann, Anders , Mathiesen, A., Geisler, Carsten, Wasik, M. & Ødum, Niels, 2005, In: Leukemia. 19, 2, p. 209-13 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.
Siepel, A., Bejerano, G., Pedersen, J. S., Hinrichs, A. S., Hou, M., Rosenbloom, K., Clawson, H., Spieth, J., Hillier, L. W., Richards, S., Weinstock, G. M., Wilson, R. K., Gibbs, R. A., Kent, W. J., Miller, W. & Haussler, D., 2005, In: Genome Research. 15, 8, p. 1034-50 16 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Structure and genome organization of AFV2, a novel archaeal lipothrixvirus with unusual terminal and core structures
Häring, M., Vestergaard, G. A., Brügger, K., Rachel, R., Garrett, Roger Antony & Prangishvili, D., 2005, In: Journal of Bacteriology. 187, 11, p. 3855-8 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The 3' region of human papillomavirus type 16 early mRNAs decrease expression
Vinther, Jeppe, Rosenstierne, M. W., Kristiansen, K. & Norrild, B., 2005, In: BMC Infectious Diseases. 5, p. 83
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The MAP kinase substrate MKS1 is a regulator of plant defense responses.
Andreasson, E., Jenkins, T., Brodersen, P., Thorgrimsen, S., Petersen, N. H. T., Zhu, S., Qiu, J., Micheelsen, P., Rocher, A., Petersen, Morten, Newman, Mari-Anne, Bjørn Nielsen, H., Hirt, H., Somssich, I., Mattsson, O. & Mundy, J., 2005, In: EMBO Journal. 24, 14, p. 2579-89 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The role of salicylic acid in the induction of cell death in Arabidopsis acd11
Brodersen, K. P., Malinovsky, F. G., Hématy, K., Newman, Mari-Anne & Mundy, J., 2005, In: Plant Physiology. 138, 2, p. 1037-1045 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Virology: Independent virus development outside a host
Häring, M., Vestergaard, G. A., Rachel, R., Chen, L., Garrett, Roger Antony & Prangishvili, D., 2005, In: Nature. 436, 7054, p. 1101-1102
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Grr1p is required for transcriptional induction of amino acid permease genes and proper transcriptional regulation of genes in carbon metabolism of Saccharomyces cerevisiae
Eckert-Boulet, N., Regenberg, Birgitte & Nielsen, J., 1 Mar 2005, In: Current Genetics. 47, 3, p. 139-149 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Myocardial perfusion defects and the left ventricular ejection fraction disclosed by scintigraphy in patients with primary hyperparathyroidism
Ogard, C. G., Søndergaard, S. B., drb459, drb459, Jakobsen, H., Nielsen, S. L. & drb459, drb459, Jul 2005, In: World Journal of Surgery. 29, 7, p. 914-6 3 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Neuropsychological assessment of chronic non-malignant pain patients treated in a multidisciplinary pain centre
Sjøgren, P., Christrup, Lona Louring, Petersen, Morten & Højsted, J., Aug 2005, In: European Journal of Pain. 9, 4, p. 453-62 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
2006
Published
A putative flavin-containing mono-oxygenase as a marker for certain defense and cell death pathways
Olszak, B., Malinovsky, F. G., Brodersen, P., Grell, M., Giese, H., Petersen, Morten & Mundy, J., 2006, In: Plant Science. 170, 3, p. 614-623
Research output: Contribution to journal › Journal article › Research › peer-review
Published
A putative viral defence mechanism in archaeal cells
Lillestøl, R. K., Redder, P., Garrett, Roger Antony & Brügger, K., 2006, In: Archaea. 2, 1, p. 59-72 14 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
An RNA gene expressed during cortical development evolved rapidly in humans.
Pollard, K. S., Salama, S. R., Lambert, N., Lambot, M., Coppens, S., Pedersen, J. S., Katzman, S., King, B., Onodera, C., Siepel, A., Kern, A. D., Dehay, C., Igel, H., Ares, M., Vanderhaeghen, P. & Haussler, D., 2006, In: Nature. 443, 7108, p. 167-72 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Arabidopsis MAP kinase 4 regulates salicylic acid- and jasmonic acid/ethylene-dependent responses via EDS1 and PAD4
Brodersen, K. P., Petersen, Morten, Nielsen, H. B., Zhu, S., Newman, Mari-Anne, Shokat, K. M., Rietz, S., Parker, J. & Mundy, J., 2006, In: Plant Journal. 47, 4, p. 532-546 15 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Crystallization and preliminary X-ray diffraction analysis of protein 14 from Sulfolobus islandicus filamentous virus (SIFV)
Goulet, A., Spinelli, S., Campanacci, V., Porciero, S., Blangy, S., Garrett, Roger Antony, van Tilbeurgh, H., Leulliot, N., Basta, T., Prangishvili, D. & Cambillau, C., 2006, In: Acta Crystallographica. Section F : Structural Biology and Crystallization Communications. 62, Pt 9, p. 884-886 2 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Dynamic usage of transcription start sites within core promoters.
Kawaji, H., Frith, M. C., Katayama, S., Sandelin, Albin Gustav, Kai, C., Kawai, J., Carninci, P. & Hayashizaki, Y., 2006, In: Genome Biology. 7, 12, p. R118
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Forces shaping the fastest evolving regions in the human genome.
Pollard, K. S., Salama, S. R., King, B., Kern, A. D., Dreszer, T., Katzman, S., Siepel, A., Pedersen, J. S., Bejerano, G., Baertsch, R., Rosenbloom, K. R., Kent, J. & Haussler, D., 2006, In: PLoS Genetics. 2, 10, p. e168
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Genome-wide occupancy profile of mediator and the Srb8-11 module reveals interactions with coding regions
Zhu, X., Wirén, M., Sinha, I., Rasmussen, N. N., Linder, T., Holmberg, Steen, Ekwall, K. & Gustafsson, C. M., 2006, In: Molecular Cell. 22, 2, p. 169-78 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
How to induce non-polarized cells of hepatic origin to express typical hepatocyte polarity: generation of new highly polarized cell models with developed and functional bile canaliculi
Peng, Xu & Grosse B, Le Tiec B, Nicolas V, Delagebeaudeuf C, Bedda T, Decaens C, Cassio D, G. B. L. T. B. N. V. D. C. B. T. D. C. C. D., 2006, In: Cell and Tissue Research.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Hybridization between subspecies of waterbuck (Kobus ellipsiprymnus) in zones of overlap with limited introgression
Lorenzen, Eline, Simonsen, Bo Thisted, Kat, P. W., Arctander, P. & Siegismund, Hans Redlef, 2006, In: Molecular Ecology. 15, 12, p. 3787-99 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Identification and classification of conserved RNA secondary structures in the human genome.
Pedersen, J. S., Bejerano, G., Siepel, A., Rosenbloom, K., Lindblad-Toh, K., Lander, E. S., Kent, J., Miller, W. & Haussler, D., 2006, In: PLoS Computational Biology. 2, 4, p. e33
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Identification of miRNA targets with stable isotope labeling by amino acids in cell culture.
Vinther, Jeppe, Hedegaard, M. M., Gardner, P. P., Andersen, J. S. & Arctander, P., 2006, In: Nucleic Acids Research. 34, 16, p. e107
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Inducible cell death in plant immunity.
Hofius, D., Tsitsigiannis, D. I., Jones, J. D. G. & Mundy, J., 2006, In: Seminars in Cancer Biology. 17, 2, p. 166-87 21 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
JAFA: a protein function annotation meta-server.
Friedberg, I., Harder, T. & Godzik, A., 2006, In: Nucleic Acids Research. 34, Web Server issue, p. W379-81
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Jak3- and JNK-dependent vascular endothelial growth factor expression in cutaneous T-cell lymphoma
Krejsgaard, T., Vetter-Kauczok, C. S., Woetmann, Anders , Lovato, P., Labuda, T., Eriksen, K. W., Zhang, Q., Becker, J. C. & Ødum, Niels, 2006, In: Leukemia. 20, 10, p. 1759-66 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Novel overlapping coding sequences in Chlamydia trachomatis
Jensen, K. T., Petersen, L., Falk, S., Iversen, P., Andersen, P., Theisen, Michael & Krogh, Anders, 2006, In: FEMS Microbiology Reviews. 265, 1, p. 106-17
Research output: Contribution to journal › Journal article › Research › peer-review
Published
RNA-binding IMPs promote cell adhesion and invadopodia formation.
Vikesaa, J., Hansen, T. V. O., Jønson, L., Borup, R., Wewer, Ulla M., Christiansen, Jan & Nielsen, Finn Cilius, 2006, In: EMBO Journal. 25, 7, p. 1456-68 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
STAT3 induces transcription of the DNA methyltransferase 1 gene (DNMT1) in malignant T lymphocytes
Zhang, Q., Wang, H. Y., Woetmann, Anders , Raghunath, P. N., Ødum, Niels & Wasik, M. A., 2006, In: Blood. 108, 3, p. 1058-64 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Spironolactone induces apoptosis and inhibits NF-kappaB independent of the mineralocorticoid receptor
Sønder, S. U. S., Woetmann, Anders , Ødum, Niels & Bendtzen, K., 2006, In: Apoptosis. 11, 12, p. 2159-65 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Structural and genomic properties of the hyperthermophilic archaeal virus ATV with an extracellular stage of the reproductive cycle
Prangishvili, D., Vestergaard, G. A., Häring, M., Aramayo, R., Basta, T., Rachel, R. & Garrett, Roger Antony, 2006, In: Journal of Molecular Biology. 359, 5, p. 1203-1216 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Sulfolobus genomes: mechanisms of rearrangement and change
Brügger, K., Peng, Xu & Garrett, Roger Antony, 2006, Archaea: Evolution, physiology and Molecular Biolog.
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
Published
The UCSC Genome Browser Database: update 2006.
Hinrichs, A. S., Karolchik, D., Baertsch, R., Barber, G. P., Bejerano, G., Clawson, H., Diekhans, M., Furey, T. S., Harte, R. A., Hsu, F., Hillman-Jackson, J., Kuhn, R. M., Pedersen, J. S., Pohl, A., Raney, B. J., Rosenbloom, K. R., Siepel, A., Smith, K. E., Sugnet, C. W., Sultan-Qurraie, A. & 7 others, Thomas, D. J., Trumbower, H., Weber, R. J., Weirauch, M., Zweig, A. S., Haussler, D. & Kent, W. J., 2006, In: Nucleic Acids Research. 34, Database issue, p. D590-8
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The UCSC genome browser database: update 2007.
Kuhn, R. M., Karolchik, D., Zweig, A. S., Trumbower, H., Thomas, D. J., Thakkapallayil, A., Sugnet, C. W., Stanke, M., Smith, K. E., Siepel, A., Rosenbloom, K. R., Rhead, B., Raney, B. J., Pohl, A., Pedersen, J. S., Hsu, F., Hinrichs, A. S., Harte, R. A., Diekhans, M., Clawson, H. & 5 others, Bejerano, G., Barber, G. P., Baertsch, R., Haussler, D. & Kent, W. J., 2006, In: Nucleic Acids Research. 35, Database issue, p. D668-73
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The cyclin-dependent kinase 8 module sterically blocks Mediator interactions with RNA polymerase II
Elmlund, H., Baraznenok, V., Lindahl, M., Samuelsen, C. O., Koeck, P. J. B., Holmberg, Steen, Hebert, H. & Gustafsson, C. M., 2006, In: Proceedings of the National Academy of Science of the United States of America. 103, 43, p. 15788-93 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Three genetically divergent lineages of the Oryx in eastern Africa: Evidence for an ancient introgressive hybridization
Masembe, C., Muwanika, V. B., Nyakaana, S., Arctander, P. & Siegismund, Hans Redlef, 2006, In: Conservation Genetics. 7, 4, p. 551-562
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Actin homolog MreB and RNA polymerase interact and are both required for chromosome segregation in Escherichia coli
Kruse, Thomas, Blagoev, B., Løbner-Olesen, Anders, Wachi, M., Sasaki, K., Iwai, N., Mann, Matthias & Gerdes, K., 1 Jan 2006, In: Genes & Development. 20, 1, p. 113-124 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mediastinalt parathyroideacysteadenom--en sjaelden årsag til primaer hyperparatyroidisme
Øgard, C. G., Nielsen, S. L., Jakobsen, H., Leth-Espensen, P., drb459, drb459 & drb459, drb459, 28 Aug 2006, In: Ugeskrift for Laeger. 168, 35, p. 2921-2 2 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
RAD18-independent ubiquitination of proliferating-cell nuclear antigen in the avian cell line DT40
Simpson, L. J., Ross, A. L., Szüts, D., Alviani, C. A., Østergaard, Vibe Hallundbæk, Patel, K. J. & Sale, J. E., 1 Sep 2006, In: EMBO Reports. 7, 9, p. 927-932 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The role of DNA double-strand breaks in spontaneous homologous recombination in S. cerevisiae
Lettier, G., Feng, Q., De Mayolo, A. A., Erdeniz, N., Reid, R. J. D., Lisby, Michael, Mortensen, U. H. & Rothstein, R., Nov 2006, In: PLOS Genetics. 2, 11, p. 1773-1786 14 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Viruses of the Archaea: a unifying view
Prangishvili, D., Forterre, P. & Garrett, Roger Antony, 1 Nov 2006, In: Nature Reviews. Microbiology. 4, 11, p. 837-48 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
2007
Published
A novel Sulfolobus non-conjugative extrachromosomal genetic element capable of integration into the host genome and spreading in the presence of a fusellovirus
Wang, Y., Duan, Z., Zhu, H., Guo, X., Wang, Z., Zhou, J., She, Q. & Huang, L., 2007, In: Virology. 363, 1, p. 124-33 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Anaphase onset before complete DNA replication with intact checkpoint responses.
Torres-Rosell, J., De Piccoli, G., Cordon-Preciado, V., Farmer, S., Jarmuz, A., Machin, F., Pasero, P., Lisby, Michael, Haber, J. E. & Aragón, L., 2007, In: Science. 315, 5817, p. 1411-5 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Cdk phosphorylation of the Ste11 transcription factor constrains differentiation-specific transcription to G1.
Kjaerulff, S., Andersen, N. R., Borup, M. T. & Nielsen, Olaf, 2007, In: Genes & Development. 21, 3, p. 347-59 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Cholecystokinin-2 receptor mediated gene expression in neuronal PC12 cells
Hansen, T. V. O., Borup, R., Marstrand, T., Rehfeld, Jens Frederik & Nielsen, Finn Cilius, 2007, In: Journal of Neurochemistry. 104, 6, p. 1450-65 15 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures.
Stark, A., Lin, M. F., Kheradpour, P., Pedersen, J. S., Parts, L., Carlson, J. W., Crosby, M. A., Rasmussen, M. D., Roy, S., Deoras, A. N., Ruby, J. G., Brennecke, J., Harvard FlyBase curators, Berkeley Drosophila Genome Project, Hodges, E., Hinrichs, A. S., Caspi, A., Paten, B., Park, S-W., Han, M. V. & 26 others, Maeder, M. L., Polansky, B. J., Robson, B. E., Aerts, S., van Helden, J., Hassan, B., Gilbert, D. G., Eastman, D. A., Rice, M., Weir, M., Hahn, M. W., Park, Y., Dewey, C. N., Pachter, L., Kent, W. J., Haussler, D., Lai, E. C., Bartel, D. P., Hannon, G. J., Kaufman, T. C., Eisen, M. B., Clark, A. G., Smith, D., Celniker, S. E., Gelbart, W. M. & Kellis, M., 2007, In: Nature. 450, 7167, p. 219-32 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Drosophila deoxyribonucleoside kinase mutants with enhanced ability to phosphorylate purine analogs
Knecht, W., Rozpedowska, E., Breton, C. L., Willer, M., Gojkovic, Z., Sandrini, M. P. B., Jørgensen, T., Hasholt, Lis Frydenreich, Munch-Petersen, B. & Piskur, J., 2007, In: Gene Therapy. 14, 17, p. 1278-1286 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Dss1 interaction with Brh2 as a regulatory mechanism for recombinational repair.
Zhou, Q., Kojic, M., Cao, Z., Lisby, Michael, Mazloum, N. A. & Holloman, W. K., 2007, In: Molecular and Cellular Biology. 27, 7, p. 2512-26 14 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Editing modifies the GABA(A) receptor subunit alpha3.
Ohlson, J., Pedersen, J. S., Haussler, D. & Ohman, M., 2007, In: RNA: A publication of the RNA Society. 13, 5, p. 698-703 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium
Clark, A. G., Eisen, M. B., Smith, D. R., Bergman, C. M., Oliver, B., Markow, T. A., Kaufman, T. C., Kellis, M., Gelbart, W., Iyer, V. N., Pollard, D. A., Sackton, T. B., Larracuente, A. M., Singh, N. D., Abad, J. P., Abt, D. N., Adryan, B., Aguade, M., Akashi, H., Anderson, W. W. & 31 others, Aquadro, C. F., Ardell, D. H., Arguello, R., Artieri, C. G., Barbash, D. A., Barker, D., Barsanti, P., Batterham, P., Batzoglou, S., Begun, D., Bhutkar, A., Blanco, E., Bosak, S. A., Bradley, R. K., Brand, A. D., Brent, M. R., Brooks, A. N., Brown, R. H., Butlin, R. K., Caggese, C., Calvi, B. R., Bernardo de Carvalho, A., Caspi, A., Castrezana, S., Celniker, S. E., Chang, J. L., Garcia, A. C. L., Nielsen, Rasmus, Pedersen, J. S., Vieira, Filipe Garrett & Drosophila 12 Genomes Consortium, D. 1. G. C., 2007, In: Nature. 450, 7167, p. 203-18 15 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
FOXP3+ regulatory T cells in cutaneous T-cell lymphomas: association with disease stage and survival
Gjerdrum, L. M., Woetmann, Anders , Ødum, Niels, Burton, C. M., Rossen, K., Skovgaard, G. L., Ryder, L. P. & Ralfkiaer, E., 2007, In: Leukemia. 21, 12, p. 2512-2518 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Fission yeast goes synthetic.
Nielsen, Olaf, 2007, In: Nature Methods. 4, 10, p. 777-8 1 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Four weeks one-leg training and high fat diet does not alter PPAR alpha protein or mRNA expression in human skeletal muscle
Helge, Jørn Wulff, Bentley, D., Schjerling, Peter, Willer, M., Gibala, M. J., Franch, J., Tapia-Laliena, M. A., Daugaard, J. R. & Andersen, J. L., 2007, In: European Journal of Applied Physiology. 101, 1, p. 105-114 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Functional and evolutionary analysis of alternatively spliced genes is consistent with an early eukaryotic origin of alternative splicing.
Irimia, M., Rukov, J. L., Penny, D. & Roy, S. W., 2007, In: BMC Evolutionary Biology. 7, p. 188
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Genome of the Acidianus bottle-shaped virus and insights into the replication and packaging mechanisms
Peng, Xu, Basta, T., Häring, M., Garrett, Roger Antony & Prangishvili, D., 2007, In: Virology. 364, 1, p. 237-43 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Genome-wide analysis of Rad52 foci reveals diverse mechanisms impacting recombination.
Alvaro, D., Lisby, Michael & Rothstein, R., 2007, In: PLoS Genetics. 3, 12, p. e228
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Genome-wide identification of estrogen receptor alpha-binding sites in mouse liver.
Gao, H., Fält, S., Sandelin, Albin Gustav, Gustafsson, J. & Dahlman-Wright, K., 2007, In: Molecular Endocrinology. 22, 1, p. 10-22 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.
Birney, E., Stamatoyannopoulos, J. A., Dutta, A., Guigó, R., Gingeras, T. R., Margulies, E. H., Weng, Z., Snyder, M., Dermitzakis, E. T., Thurman, R. E., Kuehn, M. S., Taylor, C. M., Neph, S., Koch, C. M., Asthana, S., Malhotra, A., Adzhubei, I., Greenbaum, J. A., Andrews, R. M., Flicek, P. & 36 others, Boyle, P. J., Cao, H., Carter, N. P., Clelland, G. K., Davis, S., Day, N., Dhami, P., Dillon, S. C., Dorschner, M. O., Fiegler, H., Giresi, P. G., Goldy, J., Hawrylycz, M., Haydock, A., Humbert, R., James, K. D., Johnson, B. E., Johnson, E. M., Frum, T. T., Rosenzweig, E. R., Karnani, N., Lee, K., Lefebvre, G. C., Navas, P. A., Neri, F., Parker, S. C. J., Sabo, P. J., Sandstrom, R., Sandelin, Albin Gustav, Pedersen, J. S., ENCODE Project Consortium, E. P. C., NISC Comparative Sequencing Program, N. C. S. P., Baylor College of Medicine Human Genome Sequencing Center, B. C. O. M. H. G. S. C., Washington University Genome Sequencing Center, W. U. G. S. C., Broad Institute, B. I. & Children's Hospital Oakland Research Institute, C. H. O. R. I., 2007, In: Nature. 447, 7146, p. 799-816 17 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
KBERG: KnowledgeBase for Estrogen Responsive Genes.
Tang, S., Zhang, Z., Tan, S. L., Tang, M. E., Kumar, A. P., Ramadoss, S. K. & Bajic, V. B., 2007, In: Nucleic Acids Research. 35, Database issue, p. D732-6
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mammalian RNA polymerase II core promoters: insights from genome-wide studies.
Sandelin, Albin Gustav, Carninci, P., Lenhard, B., Ponjavic, J., Hayashizaki, Y. & Hume, D. A., 2007, In: Nature Reviews. Genetics. 8, 6, p. 424-36 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Molecular composition of IMP1 ribonucleoprotein granules.
Jønson, L., Vikesaa, J., Krogh, Anders, Nielsen, Lars Kamp, Hansen, T. V., Borup, R., Johnsen, A. H., Christiansen, Jan & Nielsen, Finn Cilius, 2007, In: Molecular and Cellular Proteomics. 6, 5, p. 798-811 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Nonmalignant T cells stimulate growth of T-cell lymphoma cells in the presence of bacterial toxins
Woetmann, Anders , Lovato, P., Eriksen, K. W., Krejsgaard, T., Labuda, T., Zhang, Q., Mathiesen, A., Geisler, Carsten, Svejgaard, A., Wasik, M. A. & Ødum, Niels, 2007, In: Blood. 109, 8, p. 3325-32 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Novel bacterial sulfur oxygenase reductases from bioreactors treating gold-bearing concentrates
Chen, Z., Liu, Y., Wu, J., She, Q., Jiang, C. & Liu, S., 2007, In: Applied Microbiology and Biotechnology. 74, 3, p. 688-98 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Phylogeography, hybridization and Pleistocene refugia of the kob antelope (Kobus kob)
Lorenzen, E. D., De Neergaard, R., Arctander, P. & Siegismund, Hans Redlef, 2007, In: Molecular Ecology. 16, 15, p. 3241-52 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Population genetic structure of the common warthog (Phacochoerus africanus) in Uganda: evidence for a strong philopatry among warthogs and social structure breakdown in a disturbed population
Muwanka, V. B., Nyakaana, S., Siegismund, Hans Redlef & Arctander, P., 2007, In: African Journal of Ecology. 45, 1, p. 22-30
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Rad52 and Rad59 exhibit both overlapping and distinct functions
Feng, Q., Düring, L., Mayolo, A. A. D., Lettier, G., Lisby, Michael, Erdeniz, N., Mortensen, U. H. & Rothstein, R., 2007, In: DNA Repair. 6, 1, p. 27-37
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Rad52 and Rad59 exhibit both overlapping and distinct functions
Feng, Q., Düring, L., de Mayolo, A. A., Buchhorn, G. L., Lisby, Michael, Erdeniz, N., Mortensen, U. H. & Rothstein, R., 2007, In: DNA Repair. 6, 1, p. 27-37 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Rad52 multimerization is important for its nuclear localization in Saccharomyces cerevisiae.
Plate, I., Albertsen, L., Lisby, Michael, Hallwyl, S. C. L., Feng, Q., Seong, C., Rothstein, R., Sung, P. & Mortensen, U. H., 2007, In: DNA Repair. 7, 1, p. 57-66 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Stability of Barley stripe mosaic virus-induced gene silencing in barley.
Bruun-Rasmussen, M., Madsen, C. T., Jessing, S. & Albrechtsen, M. T., 2007, In: Molecular Plant - Microbe Interactions. 20, 11, p. 1323-31 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Structured RNAs in the ENCODE selected regions of the human genome.
Washietl, S., Pedersen, J. S., Korbel, J. O., Stocsits, C., Gruber, A. R., Hackermüller, J., Hertel, J., Lindemeyer, M., Reiche, K., Tanzer, A., Ucla, C., Wyss, C., Antonarakis, S. E., Denoeud, F., Lagarde, J., Drenkow, J., Kapranov, P., Gingeras, T. R., Guigó, R., Snyder, M. & 4 others, Gerstein, M. B., Reymond, A., Hofacker, I. L. & Stadler, P. F., 2007, In: Genome Research. 17, 6, p. 852-64 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The Slx5-Slx8 complex affects sumoylation of DNA repair proteins and negatively regulates recombination.
Burgess, R. C., Rahman, S., Lisby, Michael, Rothstein, R. & Zhao, X., 2007, In: Molecular and Cellular Biology. 27, 17, p. 6153-62 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The Smc5-Smc6 complex and SUMO modification of Rad52 regulates recombinational repair at the ribosomal gene locus.
Torres-Rosell, J., Sunjevaric, I., De Piccoli, G., Sacher, M., Eckert-Boulet, N., Reid, R., Jentsch, S., Rothstein, R., Aragón, L. & Lisby, Michael, 2007, In: Nature Cell Biology. 9, 8, p. 923-31 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The UCSC Genome Browser Database: 2008 update.
Karolchik, D., Kuhn, R. M., Baertsch, R., Barber, G. P., Clawson, H., Diekhans, M., Giardine, B., Harte, R. A., Hinrichs, A. S., Hsu, F., Kober, K. M., Miller, W., Pedersen, J. S., Pohl, A., Raney, B. J., Rhead, B., Rosenbloom, K. R., Smith, K. E., Stanke, M., Thakkapallayil, A. & 5 others, Trumbower, H., Wang, T., Zweig, A. S., Haussler, D. & Kent, W. J., 2007, In: Nucleic Acids Research. 36, Database issue, p. D773-9
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The genome of Hyperthermus butylicus: a sulfur-reducing, peptide fermenting, neutrophilic Crenarchaeote growing up to 108 degrees C
Brügger, K., Chen, L., Stark, M., Zibat, A., Redder, P., Ruepp, A., Awayez, M., She, Q., Garrett, Roger Antony & Klenk, H., 2007, In: Archaea. 2, 2, p. 127-35 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Theoretical analysis of epigenetic cell memory by nucleosome modification
Dodd, I. B., Micheelsen, M. A., Sneppen, Kim & Thon, Genevieve, 2007, In: Cell. 129, 4, p. 813-22 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Transcriptional Analysis of the Genetic Element pSSVx: Differential and Temporal Regulation of Gene Expression Reveals Correlation between Transcription and Replication
Contursi, P., Cannio, R., Prato, S., She, Q., Rossi, M. & Bartolucci, S., 2007, In: Journal of Bacteriology. 189, 17, p. 6339-50 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Using an alignment of fragment strings for comparing protein structures.
Friedberg, I., Harder, T., Kolodny, R., Sitbon, E., Li, Z. & Godzik, A., 2007, In: Bioinformatics. 23, 2, p. e219-24
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The cell biology of mitotic recombination in saccharomyces cerevisiae
Lisby, Michael & Rothstein, R., 2 May 2007, Molecular Genetics of Recombination. Aquilera, A. & Rothstein, R. (eds.). p. 335-362 28 p. (Topics in Current Genetics, Vol. 17).
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
Published
New locus important for Myxococcus social motility and development
Zhang, C. Y., Cai, K., Liu, H., ZHANG, YONG, Pan, H. W., Wang, B., Wu, Z. H., Hu, W. & Li, Y. Z., Nov 2007, In: Journal of Bacteriology. 189, 21, p. 7937-7941 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Deubiquitination of FANCD2 Is Required for DNA Crosslink Repair
Østergaard, Vibe Hallundbæk, Langevin, F., Kuiken, H. J., Pace, P., Niedzwiedz, W., Simpson, L. J., Ohzeki, M., Takata, M., Sale, J. E. & Patel, K. J., 14 Dec 2007, In: Molecular Cell. 28, 5, p. 798-809 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
2008
Published
Arabidopsis MAP kinase 4 regulates gene expression through transcription factor release in the nucleus
Qiu, J., Fiil, Berthe Katrine, Petersen, K., Nielsen, H. B., Botanga, C. J., Thorgrimsen, S. P., Palma, K., Suarez Rodriguez, M. C., Sandbech-Clausen, S., Lichota, J., Brodersen, P., Grasser, K. D., Mattsson, O., Glazebrook, J., Mundy, J. & Petersen, Morten, 2008, In: EMBO Journal. 27, 16, p. 2214-2221 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Age- and tactic-related paternity success in male African elephants
Rasmussen, H. B., Okello, J. B. A., Wittemyer, G., Siegismund, Hans Redlef, Arctander, P., Vollrath, F. & Douglas-Hamilton, I., 2008, In: Behavioral Ecology. 19, 1, p. 9-15
Research output: Contribution to journal › Journal article › Research › peer-review
Published
A putative ABC transporter is involved in negative regulation of biofilm formation by Listeria monocytogenes.
Zhu, X., Long, F., Chen, Y., Knoechel, Susanne, She, Q. & Shi, X., 2008, In: Applied and Environmental Microbiology. 74, 24, p. 7675-7683
Research output: Contribution to journal › Journal article › Research › peer-review
Published
ACD 11: Programmed Cell Death, Sphingolipids and Plant Defense
Petersen, N. H. T., 2008, Department of Biology: Museum Tusculanum. 143 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
Algorithms for Protein Structure Prediction
Paluszewski, M., 2008, København: Department of Computer Science, University of Copenhagen. 196 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
BayesMD: Flexible Biological Modeling for Motif Discovery
Tang, M. E., Krogh, Anders & Winther, Ole, 2008, In: Journal of Computational Biology. 15, 10, p. 1347-63 16 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Cerebral dysautoregulation and the risk of ischemic events in occlusive carotid artery disease
Reinhard, M., Gerds, Thomas Alexander, Grabiak, D., Zimmermann, P. R., Roth, M., Guschlbauer, B., Timmer, J., Czosnyka, M., Weiller, C. & Hetzel, A., 2008, In: Journal of Neurology. 255, 8, p. 1182-1189 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Characterization and transcriptional analysis of two gene clusters for type IV secretion machinery in Wolbachia of Armadillidium vulgare
Félix, C., Pichon, S., Braquart-Varnier, C., Braig, H., Chen, L., Garrett, Roger Antony, Martin, G. & Grève, P., 2008, In: Research in Microbiology. 159, 6, p. 481-5 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Coimmunoprecipitation (co-IP) of Nuclear Proteins and Chromatin Immunoprecipitation (ChIP) from Arabidopsis.
Petersen, Morten, 2008, In: CSH protocols.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Compensatory role for Rad52 during recombinational repair in Ustilago maydis.
Kojic, M., Mao, N., Zhou, Q., Lisby, Michael & Holloman, W. K., 2008, In: Molecular Microbiology. 67, 5, p. 1156-68 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Competing to destroy: a fight between two RNA-degradation systems
Thon, Genevieve, 2008, In: Nature Structural and Molecular Biology. 15, 10, p. 1001-2 2 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Conserved CPEs in the p53 3' untranslated region influence mRNA stability and protein synthesis
Rosenstierne, M. W., Vinther, Jeppe, Mittler, G., Larsen, L., Mann, M. & Norrild, B., 2008, In: Anticancer Research. 28, 5A, p. 2553-9 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Crenarchaeal Viruses: Morphotypes and Genomes,
Prangishvili, P., Basta, P. & Garrett, Roger Antony, 2008, Encyclopedia of Virology (Third Edition). Mahy, B. W. J. & van Regenmortel, M. H. V. (eds.). Elsevier, Vol. 3rd ed.. p. 587-595
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
Published
Differential regulation of the cellular response to DNA double-strand breaks in G1.
Barlow, J. H., Lisby, Michael & Rothstein, R., 2008, In: Molecular Cell. 30, 1, p. 73-85 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Downstream targets of WRKY33
Petersen, K., Fiil, Berthe Katrine, Mundy, J. & Petersen, Morten, 2008, In: Plant Signalling & Behavior. 3, 11, p. 1033-1034
Research output: Contribution to journal › Journal article › Research › peer-review
Published
EGFR induces expression of IRF-1 via STAT1 and STAT3 activation leading to growth arrest of human cancer cells
Andersen, P., Pedersen, M. W., Woetmann, Anders , Villingshøj, M., Stockhausen, M., Ødum, Niels & Poulsen, H. S., 2008, In: International Journal of Cancer. 122, 2, p. 342-9 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Effective population size dynamics reveal impacts of historic climatic events and recent anthropogenic pressure in African elephants
Okello, J. B. A., Wittemyer, G., Rasmussen, H. B., Arctander, P., Nyakaana, S., Douglas-Hamilton, I. & Siegismund, Hans Redlef, 2008, In: Molecular Ecology. 17, 17, p. 3788-3799 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Evidence for the horizontal transfer of an integrase gene from a fusellovirus to a pRN-like plasmid within a single strain of Sulfolobus and the implications for plasmid survival
Peng, Xu, 2008, In: Microbiology. 154, Pt 2, p. 383-91 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
FOXP3 positive regulatory T-cells in cutaneous T-cell lymphomas
Gjerdrum, L. M., Woetmann, Anders , Ødum, Niels & Ralfkiaer, E., 2008, In: Virchows Archiv. 452, Suppl. 1, p. S4-S4
Research output: Contribution to journal › Journal article › Research › peer-review
Published
FOXP3 positive regulatory T-cells in cutaneous and systemic CD30 positive T-cell lymphoproliferations
Gjerdrum, L. M., Woetmann, Anders , Ødum, Niels, Hother, C., Henrik-Nielsen, R., Gniadecki, R. & Ralfkiaer, E., 2008, In: European Journal of Haematology. 80, 6, p. 483-9 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Gamma c-signaling cytokines induce a regulatory T cell phenotype in malignant CD4+ T lymphocytes
Kasprzycka, M., Zhang, Q., Witkiewicz, A., Marzec, M., Potoczek, M., Liu, X., Wang, H. Y., Milone, M., Basu, S., Mauger, J., Choi, J. K., Abrams, J. T., Hou, J. S., Rook, A. H., Vonderheid, E., Woetmann, Anders , Ødum, Niels & Wasik, M. A., 2008, In: Journal of Immunology. 181, 4, p. 2506-12 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Hidden layers of human small RNAs
Kawaji, H., Nakamura, M., Takahashi, Y., Sandelin, Albin Gustav, Katayama, S., Fukuda, S., Daub, C. O., Kai, C., Kawai, J., Yasuda, J., Carninci, P. & Hayashizaki, Y., 2008, In: BMC Genomics. 9, p. 157
Research output: Contribution to journal › Journal article › Research › peer-review
Published
High variation and very low differentiation in wide ranging plains zebra (Equus quagga): insights from mtDNA and microsatellites
Lorenzen, Eline, Arctander, P. & Siegismund, Hans Redlef, 2008, In: Molecular Ecology. 17, 12, p. 2812-2824 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Histone modifications: Cycling with chromosomal replication
Thon, Genevieve, 2008, In: Current Biology. 18, 9, p. 380-382 3 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Host-vector systems for hyperthermophilic archaeon Sulfolobus
She, Q., Deng, L., Zhu, H., Dreibrøl, M., Awayez, M. & Liang, Y. X., 2008, Microbes and the Environment: Perspective and Challenges. Liu, S-J. & Drake, H. L. (eds.). Beijing: Science Press, Beijing, p. 151-156 6 p.
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
Published
Human GLTP and mutant forms of ACD11 suppress cell death in the Arabidopsis acd11 mutant
Petersen, N. H. T., McKinney, L. V., Pike, H., Hofius, D., Zakaria, A., Brodersen, P., Petersen, Morten, Brown, R. E. & Mundy, J., 2008, In: FEBS Journal. 275, 17, p. 4378-88 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Identification of let-7-regulated oncofetal genes.
Boyerinas, B., Park, S., Shomron, N., Hedegaard, M. M., Vinther, Jeppe, Andersen, J. S., Feig, C., Xu, J., Burge, C. B. & Peter, M. E., 2008, In: Cancer Research. 68, 8, p. 2587-91 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update.
Bryne, J. C., Valen, E., Tang, M. E., Marstrand, T., Winther, Ole, da Piedade, I., Krogh, Anders, Lenhard, B. & Sandelin, Albin Gustav, 2008, In: Nucleic Acids Research. 36, Database issue, p. D102-6
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Malignant Tregs express low molecular splice forms of FOXP3 in Sézary syndrome
Krejsgaard, T., Gjerdrum, L. M., Ralfkiaer, E., Lauenborg, B., Eriksen, K. W., Mathiesen, A., Bovin, L. F., Gniadecki, R., Geisler, Carsten, Ryder, L. P., Zhang, Q., Wasik, M. A., Ødum, Niels & Woetmann, Anders , 2008, In: Leukemia. p. 2230-2239 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mitochondrial DNA diversity and population structure of a forest-dependent rodent, Praomys taitae (Rodentia: Muridae) Heller 1911, in the fragmented forest patches of Taita Hills, Kenya
Nyakaana, S., Tumusiime, C., Oguge, N., Siegismund, Hans Redlef, Arctander, P. & Muwanika, V., 2008, In: South African Journal of Science. 104, 11/12, p. 499-504
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Model quality assessment using distance constraints from alignments
Paluszewski, M. & Karplus, K., 2008, In: Proteins - Structure Function and Bioinformatics.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Modeling promoter grammars with evolving hidden Markov models
Won, K., Sandelin, Albin Gustav, Marstrand, T. T. & Krogh, Anders, 2008, In: Bioinformatics. 24, 15, p. 1669-75 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mutation of miRNA target sequences during human evolution.
Gardner, P. P. & Vinther, Jeppe, 2008, In: Trends in Genetics. 24, 6, p. 262-5 3 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mutations in the RAM network confer resistance to the thiol oxidant 4,4'-dipyridyl disulfide
López-Mirabal, H. R., Winther, Jakob R., Thorsen, M. & Kielland-Brandt, M. C., 2008, In: Molecular Genetics and Genomics. 279, 6, p. 629-42 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Nucleotide sequence of pOLA52: a conjugative IncX1 plasmid from Escherichia coli which enables biofilm formation and multidrug efflux
Norman, A., Hansen, Lars Hestbjerg, She, Q. & Sørensen, Søren Johannes, 2008, In: Plasmid. 60, 1, p. 59-74 15 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Once in a lifetime: strategies for preventing re-replication in prokaryotic and eukaryotic cells.
Nielsen, Olaf & Løbner-Olesen, Anders, 2008, In: EMBO Reports. 9, 2, p. 151-156 5 p.
Research output: Contribution to journal › Review › Research › peer-review
Published
Origin of introns by 'intronization' of exonic sequences.
Irimia, M., Rukov, J. L., Penny, D., Vinther, Jeppe, Garcia-Fernandez, J. & Roy, S. W., 2008, In: Trends in Genetics.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Population genetic structure of savannah elephants in Kenya: conservation and management implications
Okello, J. B. A., Masembe, C., Rasmussen, H. B., Wittemyer, G., Omondi, P., Kahindi, O., Muwanika, V. B., Arctander, P., Douglas-Hamilton, I., Nyakaana, S. & Siegismund, Hans Redlef, 2008, In: Journal of Heredity. 99, 5, p. 443-452 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Prediction of fat oxidation capacity using ¹H-NMR and LC-MS lipid metabolomic data combined with phenotypic data
Pers, T. H., Martin, F. P., Verdich, C., Holst, C., Johansen, Jens Vilstrup, Astrup, A., Polak, J., Martinez, J. A., Rezzi, S., Blaak, E. E., Saris, W. H. M., Kochhar, S., Macdonald, I. A., Sørensen, T. I. A. & Ramadan, Z., 2008, In: Chemometrics and Intelligent Laboratory Systems. 93, 1, p. 34-42 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Prediction of regulatory elements
Sandelin, Albin Gustav, 2008, In: Methods in Molecular Biology. 453, p. 233-44 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Protein Decoy Generation Using Branch and Bound with Efficient Bounding
Paluszewski, M. & Winter, Pawel, 2008, Algorithms in Bioinformatics: 8th International Workshop, WABI 2008, Karlsruhe, Germany, September 15-19, 2008, Proceedings. Crandall, K. A. & Lagergren, J. (eds.). Springer, p. 382-393 12 p. (Lecture Notes in Computer Science : Lecture Notes in Bioinformatics; No. 5251).
Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
Published
Protein Structure Prediction Using Bee Colony Optimization Metaheuristic: Extended Abstract
Fonseca, R., Paluszewski, M. & Winter, Pawel, 2008, In: Koebenhavns Universitet. Datalogisk Institut. Rapport. 12, 11 p.
Research output: Contribution to journal › Conference abstract in journal › Research
Published
Reading Prokaryotic Genomes
Iversen, P., 2008, Biologisk Institut: Museum Tusculanum. 168 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
Revised sequence of foxtail mosaic virus reveals a triple gene block structure similar to potato virus X
Bruun-Rasmussen, M., Madsen, C. T., Johansen, E. & Albrechtsen, M., 2008, In: Archives of Virology. 153, 1, p. 223-226
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Rfam: updates to the RNA families database
Gardner, P. P., Daub, J., Tate, J. G., Nawrocki, E. P., Kolbe, D. L., Lindgreen, S., Wilkinson, A. C., Finn, R. D., Griffiths-Jones, S., Eddy, S. R. & Bateman, A., 2008, In: Nucleic Acids Research.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Structure of the acidianus filamentous virus 3 and comparative genomics of related archaeal lipothrixviruses
Vestergaard, G. A., Aramayo, R., Basta, T., Häring, M., Peng, Xu, Brügger, K., Chen, L., Rachel, R., Boisset, N., Garrett, Roger Antony & Prangishvili, D., 2008, In: Journal of Virology. 82, 1, p. 371-381 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Stygiolobus rod-shaped virus and the interplay of crenarchaeal rudiviruses with the CRISPR antiviral system
Vestergaard, G. A., Shah, S. A., Bize, A., Reitberger, W., Reuter, M., Phan, H., Briegel, A., Rachel, R., Garrett, Roger Antony & Prangishvili, D., 2008, In: Journal of Bacteriology. 190, 20, p. 6837-6845 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The genome landscape of ER{alpha}- and ER{beta}-binding DNA regions.
Liu, Y., Gao, H., Marstrand, T. T., Ström, A., Valen, E., Sandelin, Albin Gustav, Gustafsson, J. & Dahlman-Wright, K., 2008, In: Proceedings of the National Academy of Science of the United States of America.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Three reciprocally monophyletic mtDNA lineages elucidate the taxonomic status of Grant's gazelles
Lorenzen, Eline, Arctander, P. & Siegismund, Hans Redlef, 2008, In: Conservation Genetics. 9, 3, p. 593-601
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Two conserved modules of Schizosaccharomyces pombe Mediator regulate distinct cellular pathways
Linder, T., Rasmussen, N., Samuelsen, C. O., Chatzidaki, E., Baraznenok, V., Beve, J., Henriksen, P., Gustafsson, C. M. & Holmberg, Steen, 2008, In: Nucleic Acids Research. 36, 8, p. 2489-504 15 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Viruses in acidic geothermal environments of the Kamchatka Peninsula
Bize, A., Peng, Xu, Prokofeva, M., Maclellan, K., Lucas, S., Forterre, P., Garrett, Roger Antony, Bonch-Osmolovskaya, E. A. & Prangishvili, D., 2008, In: Research in Microbiology. 159, 5, p. 358-66 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
WAR: webserver for aligning structural RNAs
Þórarinsson, E. & Lindgreen, S., 2008, In: Nucleic Acids Research. 36, Suppl. 2, p. W79-W84 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
57miRNA regulation during oncogene-induced senescence 
Christoffersen, N. R., Frankel, Lisa, Klausen, M., Jacobsen, A., Krogh, Anders & Lund, Anders H., May 2008.
Research output: Contribution to conference › Conference abstract for conference › Research
2009
Published
A Flp-nick system to study repair of a single protein-bound nick in vivo
Nielsen, I., Bentsen, I. B., Lisby, Michael, Hansen, S., Mundbjerg, K., Andersen, A. H. & Bjergbaek, L., 2009, In: Nature Methods. 6, 10, p. 753-757 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
A conformational switch in the DiGIR1 ribozyme involved in release and folding of the downstream I-DirI mRNA
Nielsen, Henrik, Einvik, C., Lentz, T. E., Hedegaard, M. M. & Johansen, S. D., 2009, In: RNA: A publication of the RNA Society. 15, 5, p. 958-67 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
A two-step model for senescence triggered by a single critically short telomere
Abdallah, P., Luciano, P., Runge, K. W., Lisby, Michael, Géli, V., Gilson, E. & Teixeira, M. T., 2009, In: Nature Cell Biology. 11, 8, p. 988-93 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
An improved PCR method for endogenous DNA retrieval in contaminated Neandertal samples based on the usage of blocking primers
Gigli, E., Rasmussen, M., Civit, S., Rosas, A., de la Rasilla, M., Fortea, J., Gilbert, M Thomas P, Willerslev, Eske & Lalueza-Fox, C., 2009, In: Journal of Archaeological Science. 36, p. 2676-2679
Research output: Contribution to journal › Journal article › Research › peer-review
Published
An upstream activation element exerting differential transcriptional activation on an archaeal promoter
Peng, N., Xia, Q., Chen, Z., Liang, Y. X. & She, Q., 2009, In: Molecular Microbiology. 74, 4, p. 928-939
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Ancient DNA reveals late survival of mammoth and horse in interior Alaska
Haile, James Seymour, Froese, D. G., Macphee, R. D. E., Roberts, R. G., Arnold, L. J., Reyes, A. V., Rasmussen, M., Nielsen, Rasmus, Brook, B. W., Robinson, S., Demuro, M., Gilbert, M Thomas P, Munch, K., Austin, J. J., Cooper, A., Barnes, I., Möller, P. & Willerslev, Eske, 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 52, p. 22352-7 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Autoimmunity in Plants: Guards with a License to Kill
Thorgrimsen, S. P., 2009, Copenhagen University. Department of Biology: Museum Tusculanum. 91 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
Autophagic components contribute to hypersensitive cell death in Arabidopsis
Hofius, D., Schultz-Larsen, T., Joensen, J., Tsitsigiannis, D. I., Petersen, N. H. T., Mattsson, O., Jørgensen, L. B., Jones, J. D. G., Mundy, J. & Petersen, Morten, 2009, In: Cell. 137, 4, p. 773-83 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties
Lillestøl, R. K., Shah, S. A., Brügger, K., Redder, P., Phan, Safir Hien, Christiansen, Jan & Garrett, Roger Antony, 2009, In: Molecular Microbiology. 72, 1, p. 259-272
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Choreography of recombination proteins during the DNA damage response
Lisby, Michael & Rothstein, R., 2009, In: DNA Repair. 8, 9, p. 1068-76 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Computational Analysis of MicroRNAs
Jacobsen, A. M. B., 2009, Museum Tusculanum.
Research output: Book/Report › Ph.D. thesis › Research
Published
Computational methods for exploration and prediction of regulatory elements in RNA Polymerase II promoters
Tang, M. E., 2009, Biologisk Institut: Museum Tusculanum. 127 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
Conservation of the Type IV secretion system throughout Wolbachia evolution
Pichon, S., Bouchon, D., Cordaux, R., Chen, L., Garrett, Roger Antony & Grève, P., 2009, In: Biochemical and Biophysical Research Communications. 385, 4, p. 557-62 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
DISPARE: DIScriminative PAttern REfinement for Position Weight Matrices
da Piedade, I., Tang, M. E. & Elemento, O., 2009, In: BMC Bioinformatics. 10, 388, 16 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
DNA damage response to eroded telomeres
Lisby, Michael & Géli, V., 2009, In: Cell Cycle. 8, 22, p. 3617-8 1 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Dioxin increases the interaction between aryl hydrocarbon receptor and estrogen receptor alpha at human promoters
Ahmed, S., Valen, E., Sandelin, Albin Gustav & Matthews, J., 2009, In: Toxicological Sciences. 111, 2, p. 254-266
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Discovery of regulatory elements is improved by a discriminatory approach
Valen, E., Sandelin, Albin Gustav, Winther, Ole & Krogh, Anders, 2009, In: PLoS Computational Biology. 5, 11, p. e1000562
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Distribution of CRISPR spacer matches in viruses and plasmids of crenarchaeal acidothermophiles and implications for their inhibitory mechanism
Shah, S. A., Hansen, Niels Richard & Garrett, Roger Antony, 2009, In: Biochemical Society Transactions. 37, Pt 1, p. 23-8 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Dpb11/TopBP1 contributes to genomicstability via homologous recombinationand checkpoint signaling
Germann, S. M., 2009, Biologisk Institut: Museum Tusculanum. 175 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
Evolution of alternative splicing regulation: changes in predicted exonic splicing regulators are not associated with changes in alternative splicing levels in primates
Irimia, M., Rukov, J. L. & Roy, S. W., 2009, In: PLoS ONE. 4, 6, p. e5800
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Fish protein hydrolysate elevates plasma bile acids and reduces visceral adipose tissue mass in rats
Liaset, B., Madsen, L., Hao, Q., Criales, G., Mellgren, G., Marschall, H., Hallenborg, P., Espe, M., Frøyland, L. & Kristiansen, Karsten, 2009, In: BBA General Subjects. 1791, 4, p. 254-62 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Four newly isolated fuselloviruses from extreme geothermal environments reveal unusual morphologies and a possible interviral recombination mechanism
Redder, P., Peng, Xu, Brügger, K., Shah, S. A., Roesch, F., Greve, B., She, Q., Schleper, C., Forterre, P., Garrett, Roger Antony & Prangishvili, D., 2009, In: Environmental Microbiology. 11, 11, p. 2849-62 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Gene regulation by MAP kinase cascades
Fiil, Berthe Katrine, Petersen, K., Petersen, Morten & Mundy, J., 2009, In: Current Opinion in Plant Biology. 12, 5, p. 615-621 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Genetic analyses in the hyperthermophilic archaeon Sulfolobus islandicus
She, Q., Zhang, C., Deng, L., Peng, N., Chen, Z. & Liang, Y. X., 2009, In: Biochemical Society Transactions. 37, Pt 1, p. 92-6 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Genetic diversity and phylogenetic analysis of the attachment glycoprotein of phocine distemper viruses of the 2002 and 1988 epizootics
Nielsen, L., Arctander, P., Jensen, T. H., Dietz, Hans Henrik, Hammer, A. S., Banyard, A., Barrett, T. & Blixenkrone-Møller, M., 2009, In: Virus Research. 144, 1-2, p. 323-328 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE
Valen, E., Pascarella, G., Chalk, A., Maeda, N., Kojima, M., Kawazu, C., Murata, M., Nishiyori, H., Lazarevic, D., Motti, D., Marstrand, T. T., Tang, M-H. E., Zhao, X., Krogh, A., Winther, O., Arakawa, T., Kawai, J., Wells, C., Daub, C., Harbers, M. & 4 others, Hayashizaki, Y., Gustincich, S., Sandelin, Albin Gustav & Carninci, P., 2009, In: Genome Research. 19, 2, p. 255-65 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Haploinsufficiency of the retinoblastoma protein gene reduces diet-induced obesity, insulin resistance, and hepatosteatosis in mice
Mercader, J., Ribot, J., Murano, I., Feddersen, S., Cinti, S., Madsen, L., Kristiansen, Karsten, Bonet, M. L. & Palou, A., 2009, In: American Journal of Physiology: Endocrinology and Metabolism. 297, 1, p. E184-E193
Research output: Contribution to journal › Journal article › Research › peer-review
Published
High-throughput screening of Erwinia chrysanthemi pectin methylesterase variants using carbohydrate microarrays
Øbro, J., Sørensen, I., Derkx, P., Madsen, C. T., Drews, M., Willer, M., Mikkelsen, J. D. & Willats, W. G. T., 2009, In: Proteomics - Practical Proteomics. 9, 7, p. 1861-1868
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Identification and analysis of miRNAs in human breast cancer and teratoma samples using deep sequencing
Nygaard, S., Jacobsen, A., Lindow, M., Eriksen, J., Balslev, E., Flyger, H., Tolstrup, N., Moller, S., Krogh, Anders & Litman, T., 2009, In: B M C Medical Genomics. 2, 1, p. 35
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Identification and characterization of barley RNA-directed RNA polymerases
Madsen, C. T., Stephens, J., Hornyik, C., Shaw, J., Collinge, David B., Lacomme, C. & Albrechtsen, M. T., 2009, In: BBA General Subjects. 1789, 5, p. 375-385 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Identification of proteins interacting with Arabidopsis ACD11.
Petersen, N. H. T., Joensen, J., McKinney, L. V., Brodersen, P., Petersen, Morten, Hofius, D. & Mundy, J., 2009, In: Journal of Plant Physiology. 166, 6
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Investigating non-coding genome content using high-throughput sequencing data
Nygaard, S., 2009, Biologisk Institut: Museum Tusculanum. 34 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles
Portales-Casamar, E., Thongjuea, S., Kwon, A. T., Arenillas, D., Zhao, X., Valen, E., Yusuf, D., Lenhard, B., Wasserman, W. W. & Sandelin, Albin Gustav, 2009, In: Nucleic Acids Research.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Localization of recombination proteins and Srs2 reveals anti-recombinase function in vivo
Burgess, R. C., Lisby, Michael, Altmannova, V., Krejci, L., Sung, P. & Rothstein, R., 2009, In: Journal of Cell Biology. 185, 6, p. 969-81 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Novel archaeal plasmid pAH1 and its interactions with the lipothrixvirus AFV1
Basta, T., Smyth, J., Forterre, P., Prangishvili, D. & Peng, Xu, 2009, In: Molecular Microbiology. 71, 1, p. 23-34 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Novel death regulators in plant immunity
Malinovsky, F. G., 2009, Biologisk Institut: Museum Tusculanum. 55 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
Polypeptides comprising an ice-binding activity
Ramløv, H., Wilkens, C. & Løbner-Olesen, Anders, 2009, Patent No. WO/2009/065415
Research output: Patent
Published
Posttranscriptional crossregulation between Drosha and DGCR8
Han, J., Pedersen, J. S., Kwon, S. C., Belair, C. D., Kim, Y., Yeom, K., Yang, W., Haussler, D., Blelloch, R. & Kim, V. N., 2009, In: Cell. 136, 1, p. 75-84 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Proteins involved in attack and defence in Zygomycete-aphid interactions
Grell, M. N., Jensen, Annette Bruun & Lange, L., 2009.
Research output: Contribution to conference › Conference abstract for conference › Research
Published
Quantitative analysis of promoter architecture and gene regulation
Marstrand, T. T., 2009, Biologisk Institut: Museum Tusculanum. 33 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
Quantitative regulation of alternative splicing in evolution and development
Irimia, M., Rukov, J. L., Roy, S. W., Vinther, Jeppe & Garcia-Fernandez, J., 2009, In: BioEssays. 31, 1, p. 40-50 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
RSK is a principal effector of the RAS-ERK pathway for eliciting a coordinate promotile/invasive gene program and phenotype in epithelial cells
Doehn, U., Hauge, C., Frank, S. R., Jensen, C. A. J., Duda, K., Nielsen, J. V., Cohen, M. S., Johansen, Jens Vilstrup, Winther, B. R., Lund, L. R., Winther, Ole, Taunton, J., Hansen, S. H. & Frödin, Morten, 2009, In: Molecular Cell. 35, 4, p. 511-22 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Rad10 exhibits lesion-dependent genetic requirements for recruitment to DNA double-strand breaks in Saccharomyces cerevisiae
Moore, D. M., Karlin, J., González-Barrera, S., Mardiros, A., Lisby, Michael, Doughty, A., Gilley, J., Rothstein, R., Friedberg, E. C. & Fischhaber, P. L., 2009, In: Nucleic Acids Research. 37, 19, p. 6429-38 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Rad52
Mortensen, U. H., Lisby, Michael & Rothstein, R., 2009, In: Current Biology. 19, 16, p. R676-7
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Regulation of rDNA stability by sumoylation
Eckert-Boulet, N. & Lisby, Michael, 2009, In: DNA Repair. 8, 4, p. 507-16 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Response to Comment by Goldberg et al. on "DNA from Pre-Clovis Human Coprolites in Oregon, North America"
Rasmussen, M., Cummings, L., Gilbert, M Thomas P, Bryant, V., Smith, C., Jenkins, D. & Willerslev, Eske, 2009, In: Science. 325, p. 148 1 p.
Research output: Contribution to journal › Comment/debate › Research
Published
Response to Comment by Poinar et al. on "DNA from Pre-Clovis Human Coprolites in Oregon, North America"
Gilbert, M Thomas P, Jenkins, D., Higham, T., Rasmussen, M., Malmstrom, H., Svensson, E., Sanchez, J., Cummings, L., Yohe, I. R., Hofreiter, M., Götherström, A. & Willerslev, Eske, 2009, In: Science. 325, 5937, p. 148 1 p.
Research output: Contribution to journal › Comment/debate › Research
Published
Self-consuming innate immunity in Arabidopsis
Hofius, D., Mundy, J. & Petersen, Morten, 2009, In: Autophagy. 5, 8, p. 1206-7 1 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The DNA damage response at eroded telomeres and tethering to the nuclear pore complex
Khadaroo, B., Teixeira, M. T., Luciano, P., Eckert-Boulet, N., Germann, S. M., Simon, M. N., Gallina, I., Abdallah, P., Gilson, E., Géli, V. & Lisby, Michael, 2009, In: Nature Cell Biology. 11, 8, p. 980-7 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The genome of Burkholderia cenocepacia J2315, an epidemic pathogen of cystic fibrosis patients
Holden, M. T. G., Seth-Smith, H. M. B., Crossman, L. C., Sebaihia, M., Bentley, S. D., Cerdeño-Tárraga, A. M., Thomson, N. R., Bason, N., Quail, M. A., Sharp, S., Cherevach, I., Churcher, C., Goodhead, I., Hauser, H., Holroyd, N., Mungall, K., Scott, P., Walker, D., White, B., Rose, H. & 12 others, Iversen, P., Mil-Homens, D., Rocha, E. P. C., Fialho, A. M., Baldwin, A., Dowson, C., Barrell, B. G., Govan, J. R., Vandamme, P., Hart, C. A., Mahenthiralingam, E. & Parkhill, J., 2009, In: Journal of Bacteriology. 191, 1, p. 261-77 16 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The life-cycle of ATV and other crenarchaeal viruses
Vestergaard, G. A., 2009, Biologisk Institut: Museum Tusculanum. 91 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
The mosaic genome structure of the Wolbachia wRi strain infecting Drosophila simulans
Klasson, L., Westberg, J., Sapountzis, P., Näslund, K., Lutnaes, Y., Darby, A. C., Veneti, Z., Chen, L., Braig, H. R., Garrett, Roger Antony, Bourtzis, K. & Andersson, S. G. E., 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 14, p. 5725-5730
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
Suzuki, H., Forrest, A. R. R., van Nimwegen, E., Daub, C. O., Balwierz, P. J., Irvine, K. M., Lassmann, T., Ravasi, T., Hasegawa, Y., de Hoon, M. J. L., Katayama, S., Schroder, K., Carninci, P., Tomaru, Y., Kanamori-Katayama, M., Kubosaki, A., Akalin, A., Ando, Y., Arner, E., Asada, M. & 31 others, Asahara, H., Bailey, T., Bajic, V. B., Bauer, D., Beckhouse, A. G., Bertin, N., Björkegren, J., Brombacher, F., Bulger, E., Chalk, A. M., Chiba, J., Cloonan, N., Dawe, A., Dostie, J., Engström, P. G., Essack, M., Faulkner, G. J., Fink, J. L., Fredman, D., Fujimori, K., Furuno, M., Gojobori, T., Gough, J., Grimmond, S. M., Jacobsen, A., Krogh, Anders, Nygaard, S., Sandelin, Albin Gustav, Valen, E., Winther, Ole & Riken Omics Science Center, R. O. S. C., 2009, In: Nature Genetics. 41, 5, p. 553-62 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Unmarked gene deletion and host-vector system for the hyperthermophilic crenarchaeon Sulfolobus islandicus
Deng, L., Zhu, H., Chen, Z., Liang, Y. X. & She, Q., 2009, In: Extremophiles. 13, 4, p. 735-46 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Vesicles in electric fields: some novel aspects of membrane behavior
Dimova, R., Bezlyepkina, N. & Domange Jordö, M. E., 2009, In: Soft Matter. 5, 17, p. 3201-3212 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Viruses of the Archaea
Basta, T., Garrett, Roger Antony & Prangishvili, D., 2009, Encyclopedia of Life Sciences. Wiley, p. 1-8
Research output: Chapter in Book/Report/Conference proceeding › Encyclopedia chapter › Research
Published
Where sociality and relatedness diverge: the genetic basis for hierarchical social organization in African elephants
Wittemyer, G., Okello, J. B. A., Rasmussen, H. B., Arctander, P., Nyakaana, S., Douglas-Hamilton, I. & Siegismund, Hans Redlef, 2009, In: PROCEEDINGS OF THE ROYAL SOCIETY OF LONDON SERIES B-CONTAINING PAPERS OF A BIOLOGICAL CHARACTER. 276, 1672, p. 3513-3521
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Seawater-regulated genes for two-component systems and outer membrane proteins in myxococcus
Pan, H. W., Liu, H., Liu, T., Li, C. Y., Li, Z. F., Cai, K., Zhang, C. Y., ZHANG, YONG, Hu, W., Wu, Z. H. & Li, Y. Z., Apr 2009, In: Journal of Bacteriology. 191, 7, p. 2102-2111 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
2010
Published
A long-standing Pleistocene refugium in southern Africa and a mosaic of refugia in East Africa: insights from mtDNA and the common eland antelope
Lorenzen, Eline, Masembe, C., Arctander, P. & Siegismund, Hans Redlef, 2010, In: Journal of Biogeography. 37, 3, p. 571-581 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Adaptation to diverse nitrogen-limited environments by deletion or extrachromosomal element formation of the GAP1 locus
Gresham, D., Usaite, R., Germann, S. M., Lisby, Michael, Botstein, D. & Regenberg, Birgitte, 2010, In: Proceedings of the National Academy of Science of the United States of America. 107, 43, p. 18551-6 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Gene expression analysis of the emergence of epileptiform activity after focal injection of kainic acid into mouse hippocampus
Motti, D., Le Duigou, C., Eugène, E., Chemaly, N., Wittner, L., Lazarevic, D., Krmac, H., Marstrand, T., Valen, E., Sanges, R., Stupka, E., Sandelin, Albin Gustav, Cherubini, E., Gustincich, S. & Miles, R., 2010, In: European Journal of Neuroscience. 32, 8, p. 1364-79 15 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Gene expression profiles in rice roots under low phosphorus stress
Li, L., Liu, C. & Lian, X., 2010, In: Plant Molecular Biology. 72, 4-5, p. 423-432 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Getting the best out of long-wavelength X-rays: de novo chlorine/sulfur SAD phasing of a structural protein from ATV
Goulet, A., Vestergaard, G. A., Felisberto-Rodrigues, C., Campanacci, V., Garrett, Roger Antony, Cambillau, C. & Ortiz-Lombardía, M., 2010, In: Acta Crystallographica. Section D: Biological Crystallography. 66, Pt 3, p. 304-308 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Insights into the structure, function and evolution of the radical-SAM 23S rRNA methyltransferase Cfr that confers antibiotic resistance in bacteria
Kaminska, K. H., Purta, E., Hansen, L. H., Bujnicki, J. M., Vester, B. & Long, K. S., 2010, In: Nucleic Acids Research. 38, 5, p. 1652-1663 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Lazarus1, a DUF300 protein, contributes to programmed cell death associated with Arabidopsis acd11 and the hypersensitive response
Malinovsky, F. G., Brodersen, P., Fiil, Berthe Katrine, McKinney, L. V., Thorgrimsen, S., Beck, M., Nielsen, H. B., Pietra, S., Zipfel, C., Robatzek, S., Petersen, Morten, Hofius, D. & Mundy, J., 2010, In: P L o S One. 5, 9, 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
MicroRNA-145 targets YES and STAT1 in colon cancer cells
Gregersen, Lea Haarup, Jacobsen, A. B., Frankel, Lisa, Wen, J., Krogh, Anders & Lund, Anders H., 2010, In: PLoS ONE. 5, 1, p. e8836
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mitogen-activated protein kinase signaling in plants
Rodriguez, M. C. S., Petersen, Morten & Mundy, J., 2010, In: Annual Review of Plant Biology. 61, 1, p. 621-649 29 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mutations in 23S rRNA at the peptidyl transferase center and their relationship to linezolid binding and cross-resistance
Long, K. S., Munck, C., Andersen, T. M. B., Schaub, M. A., Hobbie, S. N., Böttger, E. C. & Vester, B., 2010, In: Antimicrobial Agents and Chemotherapy. 54, 11, p. 4705-4713 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
NAC genes: Time-specific regulators of hormonal signaling in Arabidopsis
Jensen, M. K., Kjærsgaard, T., Petersen, K. & Skriver, Karen, 2010, In: Plant Signalling & Behavior. 5, 7, 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Persistent Organic Pollutant Exposure Leads to Insulin Resistance Syndrome
Ruzzin, J., Petersen, R., Meugnier, E., Madsen, L., Lock, E., Lillefosse, H., Ma, T., Pesenti, S., Sonne, Si Brask, Marstrand, T. T., Malde, M. K., Du, Z., Chavey, C., Fajas, L., Lundebye, A., Brand, C. L., Vidal, H., Kristiansen, Karsten & Frøyland, L., 2010, In: Environmental Health Perspectives. 118, 4, p. 465-71
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Rad52 SUMOylation affects the efficiency of the DNA repair: [Inkl. Corrigendum]
Altmannova, V., Eckert-Boulet, N., Arneric, M., Kolesar, P., Chaloupkova, R., Damborsky, J., Sung, P., Zhao, X., Lisby, Michael & Krejci, L., 2010, In: Nucleic Acids Research. 38, 14, p. 4708-4721 14 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The fate of irreparable DNA double-strand breaks and eroded telomeres at the nuclear periphery
Lisby, Michael, Teixeira, T., Gilson, E. & Géli, V., 2010, In: Nucleus (Austin, Tex.). 1, 2, p. 158-161 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The rad52-Y66A allele alters the choice of donor template during spontaneous chromosomal recombination
de Mayolo, A. A., Sunjevaric, I., Reid, R., Mortensen, U. H., Rothstein, R. & Lisby, Michael, 2010, In: DNA Repair. 9, 1, p. 23-32
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Using transcriptomics to identify and validate novel biomarkers of human skeletal muscle cancer cachexia
Stephens, N. A., Gallagher, I. J., Rooyackers, O., Skipworth, R. J., Tan, B. H., Marstrand, T. T., Ross, J. A., Guttridge, D. C., Lundell, L., Fearon, K. C. & Timmons, J. A., 2010, In: Genome Medicine. 2, 12 p., 1.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
miRMaid: a unified programming interface for microRNA data resources
Jacobsen, A., Krogh, Anders, Kauppinen, S. & Lindow, M., 2010, In: BMC Bioinformatics. 11, Suppl 1, p. 29
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Arabidopsis MKS1 is involved in basal immunity and requires an intact N-terminal domain for proper function
Petersen, K., Qiu, J., Lütje, J., Fiil, Berthe Katrine, Hansen, S., Mundy, J. & Petersen, Morten, 1 Jan 2010, In: P L o S One. 5, 12, p. e14364
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Autoimmunity in Arabidopsis acd11 is mediated by epigenetic regulation of an immune receptor
Palma, K., Thorgrimsen, S., Malinovsky, F. G., Fiil, Berthe Katrine, Nielsen, H. B., Brodersen, P., Hofius, D., Petersen, Morten & Mundy, J., 1 Jan 2010, In: P L o S Pathogens. 6, 10
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Erratum: A two-step model for senescence triggered by a single critically short telomere: (Nature Cell Biol. (2009) 11 (988-993))
Abdallah, P., Luciano, P., Runge, K. W., Lisby, Michael, Géli, V., Gilson, E. & Teixeira, M. T., May 2010, In: Nature Cell Biology. 12, 5, p. 520 1 p.
Research output: Contribution to journal › Comment/debate › Research › peer-review
Published
Familial relationships in hyperthermo- and acidophilic archaeal viruses
Happonen, L. J., Redder, P., Peng, Xu, Reigstad, L. J., Prangishvili, D. & Butcher, S. J., 1 May 2010, In: Journal of Virology. 84, 9, p. 4747-54 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
RNAi and heterochromatin repress centromeric meiotic recombination
Ellermeier, C., Higuchi, E. C., Phadnis, N., Holm, L., Geelhood, J. L., Thon, Genevieve & Smith, G. R., 11 May 2010, In: Proceedings of the National Academy of Sciences USA (PNAS). 107, 19, p. 8701-5 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Regulation of ribonucleotide reductase by Spd1 involves multiple mechanisms
Nestoras, K., Mohammed, A. H., Schreurs, A., Fleck, O., Watson, A. T., Poitelea, M., O'Shea, Charlotte, Chahwan, C., Holmberg, Christian, Kragelund, Birthe Brandt, Nielsen, Olaf, Osborne, M., Carr, A. M. & Liu, C., 1 Jun 2010, In: Genes & Development. 24, 11, p. 1145-1159 15 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The Scottish Structural Proteomics Facility: targets, methods and outputs
Oke, M., Carter, L. G., Johnson, K. A., Liu, H., McMahon, S. A., Yan, X., Kerou, M., Weikart, N. D., Kadi, N., Sheikh, M. A., Schmelz, S., Dorward, M., Zawadzki, M., Cozens, C., Falconer, H., Powers, H., Overton, I. M., van Niekerk, C. A. J., Peng, X., Patel, P. & 11 others, Garrett, Roger Antony, Prangishvili, D., Botting, C. H., Coote, P. J., Dryden, D. T. F., Barton, G. J., Schwarz-Linek, U., Challis, G. L., Taylor, G. L., White, M. F. & Naismith, J. H., 1 Jun 2010, In: Journal of Structural and Functional Genomics. 11, 2, p. 167-80 14 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
A bacterial ras-like small GTP-binding protein and its cognate GAP establish a dynamic spatial polarity axis to control directed motility
ZHANG, YONG, Franco, M., Ducret, A. & Mignot, T., Jul 2010, In: PLOS Biology. 8, 7
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Transcriptomes of the desiccation-tolerant resurrection plant Craterostigma plantagineum
Suarez Rodriguez, M. C., Edsgärd, D., Hussain, S. S., Alquezar Planas, D. E., Rasmussen, M., Gilbert, M Thomas P, Nielsen, B. H., Bartels, D. & Mundy, J., Jul 2010, In: The Plant Journal. 63, 2, p. 212-228 17 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
[Pregnancy within the uterine scar of a prior Caesarean section].
Hartwell, D., Hoffmann, Eva, Krebs, Lone, Langhoff-Roos, J. & Petersen, K., Aug 2010, In: Ugeskrift for Laeger.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Transcription termination in the plasmid/virus hybrid pSSVx from Sulfolobus islandicus
Contursi, P., Cannio, R. & She, Q., 1 Sep 2010, In: Extremophiles. 14, 5, p. 453-63 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Regulation of homologous recombination at telomeres in budding yeast
Eckert-Boulet, N. & Lisby, Michael, 10 Sep 2010, In: F E B S Letters. 584, 17, p. 3696-3702 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Revealing the essentiality of multiple archaeal pcna genes using a mutant propagation assay based on an improved knockout method
Zhang, C., Guo, L., Deng, L., Wu, Y., Liang, Y., Huang, L. & She, Q., Nov 2010, In: Microbiology. 156, Part 11
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Metagenomic analyses of novel viruses and plasmids from a cultured environmental sample of hyperthermophilic neutrophiles
Garrett, Roger Antony, Prangishvili, D., Shah, S. A., Reuter, M., Stetter, K. O. & Peng, Xu, 1 Nov 2010, In: Environmental Microbiology. 12, 11, p. 2918-30 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Break-induced ATR and Ddb1-Cul4(Cdt)² ubiquitin ligase-dependent nucleotide synthesis promotes homologous recombination repair in fission yeast
Moss, J., Tinline-Purvis, H., Walker, C. A., Folkes, L. K., Stratford, M. R., Hayles, J., Hoe, K., Kim, D., Park, H., Kearsey, S. E., Fleck, O., Holmberg, Christian, Nielsen, Olaf & Humphrey, T. C., 1 Dec 2010, In: Genes & Development. 24, 23, p. 2705-16 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The transcription elongation factor Bur1-Bur2 interacts with replication protein A and maintains genome stability during replication stress
Clausing, E., Mayer, A., Chanarat, S., Müller, B., Germann, S. M., Cramer, P., Lisby, Michael & Strässer, K., 31 Dec 2010, In: Journal of Biological Chemistry. 285, 53, p. 41665-41674 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
2011
Published
A dimeric Rep protein initiates replication of a linear archaeal virus genome: implications for the Rep mechanism and viral replication
Oke, M., Kerou, M., Liu, H., Peng, Xu, Garrett, Roger Antony, Prangishvili, D., Naismith, J. H. & White, M. F., 2011, In: Journal of Virology. 85, 2, p. 925-31 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
AAA ATPase p529 of Acidianus two-tailed virus ATV and host receptor recognition
Erdmann, S., Scheele, U. & Garrett, Roger Antony, 2011, In: Virology. 421, 1, p. 61-66 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Archaeal CRISPR-based immune systems: exchangeable functional modules
Garrett, Roger Antony, Vestergaard, G. A. & Shah, S. A., 2011, In: Trends in Microbiology. 19, 11, p. 549-56 8 p.
Research output: Contribution to journal › Review › Research › peer-review
Published
Bird and plant companion species predict breeding and migrant habitats of the genus Oenanthe
Pentzold, S., Pentzold, C. & Randler, C., 2011, In: Journal of Ecology and Field Biology. 34, 3, p. 287-293 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
C68 from the Sulfolobus islandicus plasmid-virus pSSVx is a novel member of the AbrB-like transcription factor family
Contursi, P., D'Ambrosio, K., Pirone, L., Pedone, E., Aucelli, T., She, Q., De Simone, G. & Bartolucci, S., 2011, In: Biochemical Journal. 435, 1, p. 157-66 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
CRISPR-based immune systems of the Sulfolobales: complexity and diversity
Garrett, Roger Antony, Shah, S. A., Vestergaard, G. A., Deng, Ling, Guðbergsdóttir, S. R., Kenchappa, C. S., Erdmann, S. & She, Q., 2011, In: Biochemical Society Transactions. 39, 1, p. 51-57 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
CRISPR/Cas and Cmr modules, mobility and evolution of adaptive immune systems
Shah, S. A. & Garrett, Roger Antony, 2011, In: Research in Microbiology. 162, 1, p. 27-38 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Cell biology of homologous recombination in yeast
Eckert-Boulet, N. V., Rothstein, R. & Lisby, Michael, 2011, DNA recombination: methods and protocols. Tsubouchi, H. (ed.). Springer, p. 523-536 14 p. (Methods in Molecular Biology, Vol. 745).
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
Published
Chaperone role for proteins p618 and p892 in the extracellular tail development of Acidianus two-tailed virus
Scheele, U., Erdmann, S., Ungewickell, E. J., Felisberto-Rodrigues, C., Ortiz-Lombardía, M. & Garrett, Roger Antony, 2011, In: Journal of Virology. 85, 10, p. 4812-4821 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Deletion of the topoisomerase III gene in the hyperthermophilic archaeon Sulfolobus islandicus results in slow growth and defects in cell cycle control
Li, X., Guo, L., Deng, Ling, Feng, D., Ren, Y., Chu, Y., She, Q. & Huang, L., 2011, In: Journal of Genetics and Genomics. 38, 6, p. 253-9 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Dpb11/TopBP1 plays distinct roles in DNA replication, checkpoint response and homologous recombination
Germann, S. M., Østergaard, Vibe Hallundbæk, Haas, C., Salis, P., Motegi, A. & Lisby, Michael, 2011, In: D N A Repair. 10, 2, p. 210-224 15 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector-borne viral and plasmid genes and protospacers
Guðbergsdóttir, S. R., Deng, L., Chen, Z., Jensen, J. V. K., Jensen, L. R., She, Q. & Garrett, Roger Antony, 2011, In: Molecular Microbiology. 79, 1, p. 35-49 15 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Generative probabilistic models extend the scope of inferential structure determination
Olsson, S., Boomsma, Wouter, Frellsen, J., Bottaro, S., Harder, T. P., Ferkinghoff-Borg, J. & Hamelryck, Thomas Wim, 2011, In: Journal of Magnetic Resonance. 213, 1, p. 182-186 5 p.
Research output: Contribution to journal › Letter › Research › peer-review
Published
Genomic analysis of Acidianus hospitalis W1 a host for studying crenarchaeal virus and plasmid life cycles
You, X. Y., Liu, C., Wang, S. Y., Jiang, C. Y., Shah, S. A., Prangishvili, D., She, Q., Liu, S. J. & Garrett, Roger Antony, 2011, In: Extremophiles. 15, p. 487-497 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
H3K9me-independent gene silencing in fission yeast heterochromatin by Clr5 and histone deacetylases
Hansen, K. R., Hazan, I., Shanker, S., Watt, S., Hansen, J. V., Bähler, J., Martienssen, R. A., Partridge, J. F., Cohen, A. & Thon, Genevieve, 2011, In: P L o S Genetics. 7, 1, 16 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Morphological classification of plant cell deaths
van Doorn, W. G., Beers, E. P., Dangl, J. L., Franklin-Tong, V. E., Gallois, P., Hara-Nishimura, I., Jones, A. M., Kawai-Yamada, M., Lam, E., Mundy, J., Mur, L. A. J., Petersen, Morten, Smertenko, A., Taliansky, M., Van Breusegem, F., Wolpert, T., Woltering, E., Zhivotovsky, B. & Bozhkov, P. V., 2011, In: Cell Death and Differentiation. 18, 8, p. 1241-1246 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Nucleotide diversity and linkage disequilibrium of nine genes with putative effects on flowering time in perennial ryegrass (Lolium perenne L.)
Fiil, A., Lenk, I., Petersen, K., Jensen, C. S., Nielsen, K. K., Schejbel, B., Andersen, J. R. & Lübberstedt, T., 2011, In: Plant Science. 180, 2, p. 228-237 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Phenotypic, proteomic, and genomic characterization of a putative ABC-transporter permease involved in Listeria monocytogenes biofilm formation
Zhu, X., Liu, W., Lametsch, Rene, Aarestrup, F. M., Shi, C., She, Q., Shi, X. & Knoechel, Susanne, 2011, In: Foodborne Pathogens and Disease. 8, 4, p. 495-501 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Phenylbutyrate inhibits homologous recombination induced by camptothecin and methyl methanesulfonate
Kaiser, G. S., Germann, S. M., Westergaard, T. & Lisby, Michael, 2011, In: Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis. 713, 1-2, p. 64-75 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Role of autophagy in disease resistance and hypersensitive response-associated cell death
Hofius, D., Munch, D., Bressendorff, Simon, Mundy, J. & Petersen, Morten, 2011, In: Cell Death and Differentiation. 18, 8, p. 1257-1262 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Schizosaccharomyces pombe Mms1 channels repair of perturbed replication into Rhp51 independent homologous recombination
Vejrup-Hansen, R., Mizuno, K., Miyabe, I., Fleck, O., Holmberg, Christian, Murray, J. M., Carr, A. M. & Nielsen, Olaf, 2011, In: DNA Repair. 10, 3, p. 283-95 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Senescence-associated barley NAC (NAM, ATAF1,2, CUC) transcription factor interacts with radical-induced cell death 1 through a disordered regulatory domain
Kjaersgaard, T., Jensen, M. K., Christiansen, M. W., Gregersen, P. L., Kragelund, Birthe Brandt & Skriver, Karen, 2011, In: Journal of Biological Chemistry. 286, 41, p. 35418-29 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Structural and Functional Characterization of an Archaeal Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR)-associated Complex for Antiviral Defense (CASCADE)
Lintner, N. G., Kerou, M., Brumfield, S. K., Graham, S., Liu, H., Naismith, J. H., Sdano, M., Peng, N., She, Q., Copié, V., Young, M. J., White, M. F. & Lawrence, C. M., 2011, In: The Journal of Biological Chemistry. 286, 24, p. 21643-56 14 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Sulfolobus Turreted Icosahedral Virus c92 Protein Responsible for the Formation of Pyramid-Like Cellular Lysis Structures
Snyder, J. C., Brumfield, S. K., Peng, N., She, Q. & Young, M. J., 2011, In: Journal of Virology. 85, 13, p. 6287-92 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Archaeal promoter architecture and mechanism of gene activation
Peng, N., Ao, X., Liang, Y. X. & She, Q., 19 Jan 2011, In: Biochemical Society Transactions. 39, 1, p. 99-103 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Genome Analyses of Icelandic Strains of Sulfolobus islandicus, Model Organisms for Genetic and Virus-Host Interaction Studies
Guo, L., Brügger, K., Liu, C., Shah, S. A., Zheng, H., Zhu, Y., Wang, S., Lillestøl, R. K., Chen, L., Frank, J., Prangishvili, D., Paulin, L., She, Q., Huang, L. & Garrett, Roger Antony, 1 Apr 2011, In: Journal of Bacteriology. 193, 7, p. 1672-80 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
2012
Published
A synthetic arabinose-inducible promoter confers high levels of recombinant protein expression in hyperthermophilic archaeon Sulfolobus islandicus
Peng, N., Deng, Ling, Mei, Y., Jiang, D., Hu, Y., Awayez, M., Liang, Y. & She, Q., 2012, In: Applied and Environmental Microbiology. 78, 16, p. 5630-5637 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
An archaeal protein evolutionarily conserved in prokaryotes is a zinc-dependent metalloprotease
Hu, Y., Peng, N., Han, W., Mei, Y., Chen, Z., Feng, X., Liang, Y. X. & She, Q., 2012, In: Bioscience Reports. 32, p. 609-618 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Archaeal viruses-novel, diverse and enigmatic
Peng, Xu, Garrett, Roger Antony & She, Q., 2012, In: Science China Life Sciences. 55, 5, p. 422-433 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
CRISPR/Cas and CRISPR/Cmr immune systems of archaea
Shah, S. A., Vestergaard, G. A. & Garrett, Roger Antony, 2012, Regulatory RNAs in prokaryotes. Springer, p. 163-181 19 p.
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
Published
Crystal structure of ATV^ORF273, a new fold for a thermo- and acido-stable protein from the Acidianus two-tailed virus
Felisberto-Rodrigues, C., Blangy, S., Goulet, A., Vestergaard, G. A., Cambillau, C., Garrett, Roger Antony & Ortiz-Lombardía, M., 2012, In: P L o S One. 7, 10, 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Cyclin-dependent kinase suppression by WEE1 kinase protects the genome through control of replication initiation and nucleotide consumption
Beck, H., Nähse-Kumpf, V., Larsen, Marie Sofie Yoo, O'Hanlon, K. A., Patzke, S., Holmberg, Christian, Mejlvang, J., Groth, Anja, Nielsen, Olaf, Syljuåsen, R. G. & Sørensen, Claus Storgaard, 2012, In: Molecular and Cellular Biology. 32, 20, p. 4226-4236 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Development of a Simvastatin Selection Marker for a Hyperthermophilic Acidophile, Sulfolobus islandicus
Zheng, T., Huang, Q., Zhang, C., Ni, J., She, Q. & Shen, Y., 2012, In: Applied and Environmental Microbiology. 78, 2, p. 568-574 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Dissection of the functional domains of an archaeal holliday junction helicase
Hong, Y., Chu, M., Li, Y., Ni, J., Sheng, D., Hou, G., She, Q. & Shen, Y., 2012, In: D N A Repair. 11, 2, p. 102-111 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Ekstremernes herrer
Uldahl, K. B. & Peng, Xu, 2012, In: Aktuel Naturvidenskab. 2012, 05, p. 28-29 2 p.
Research output: Contribution to journal › Journal article › Research
Published
Exceptional thermal stability and organic solvent tolerance of an esterase expressed from a thermophilic host
Mei, Y., Peng, N., Zhao, S., Hu, Y., Wang, H., Liang, Y. & She, Q., 2012, In: Applied Microbiology and Biotechnology. 93, 5, p. 1965-1974 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Guidelines for the use and interpretation of assays for monitoring autophagy
Klionsky, D. J., Abdalla, F. C., Abeliovich, H., Farkas, T., Frankel, Lisa, Høyer-Hansen, M., Jäätteä, M., Lund, Anders H., Olsson, S. & Petersen, Morten, 2012, In: Autophagy. 8, 4, p. 445-544 100 p.
Research output: Contribution to journal › Review › Research › peer-review
Published
Histone H3 lysine 56 acetylation and the response to DNA replication fork damage
Wurtele, H., Kaiser, G. S., Bacal, J., St-Hilaire, E., Lee, E., Tsao, S., Dorn, J., Maddox, P., Lisby, Michael, Pasero, P. & Verreault, A., 2012, In: Molecular and Cellular Biology. 32, 1, p. 154-172 19 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Immunity in the moss Physcomitrella patens
Bressendorff, Simon, 2012, Department of Biology, Faculty of Science, University of Copenhagen.
Research output: Book/Report › Ph.D. thesis › Research
Published
Lack of the RNA chaperone Hfq attenuates pathogenicity of several Escherichia coli pathotypes towards Caenorhabditis elegans
Bojer, M. S., Jakobsen, H., Struve, C., Krogfelt, K. A. & Løbner-Olesen, Anders, 2012, In: Microbes and Infection. 14, 12, p. 1034-1039 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Live cell microscopy of DNA damage response in Saccharomyces cerevisiae
Pinela da Silva, S. C., Gallina, I., Eckert-Boulet, N. V. & Lisby, Michael, 2012, DNA repair protocols. Springer Science+Business Media, p. 433-443 11 p. (Methods in Molecular Biology, Vol. 920).
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
Published
MAP kinase cascades in Arabidopsis innate immunity
Rasmussen, M. W., Roux, M. E., Petersen, Morten & Mundy, J., 2012, In: Frontiers in Plant Science. 3, 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
MRN1 implicates chromatin remodeling complexes and architectural factors in mRNA maturation.
Düring, L., Thorsen, M., Petersen, D., Køster, B., Jensen, T. H. & Holmberg, Steen, 2012, In: P L o S One. 7, 9, 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mediator regulates non-coding RNA transcription at fission yeast centromeres
Thorsen, M., Hansen, H., Venturi, M., Holmberg, Steen & Thon, Genevieve, 2012, In: Epigenetics & Chromatin. 5, p. 1-10 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Modulation of CRISPR locus transcription by the repeat-binding protein Cbp1 in Sulfolobus
Deng, Ling, Kenchappa, C. S., Peng, Xu, She, Q. & Garrett, Roger Antony, 2012, In: Nucleic Acids Research. 40, 6, p. 2470-2480 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
New romance between RNA degradation pathways: Mmi1 and RNAi meet on heterochromatic islands
Holm, L. R. & Thon, Genevieve, 2012, In: E M B O Journal. 31, p. 2242 - 2243 2 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
On the misgivings of anthropomorphic consensus polling in defining the complexity of life
Egel, Richard, 2012, In: Journal of Biomolecular Structure & Dynamics. 29, 4, p. 615-616 2 p.
Research output: Contribution to journal › Comment/debate › Research › peer-review
Published
Optimization of ordered plasmid assembly by gap repair in Saccharomyces cerevisiae
Eckert-Boulet, N. V., Pedersen, M. L., Krogh, B. O. & Lisby, Michael, 2012, In: Yeast. 29, 8, p. 323-334 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Order by disorder in plant signaling
Kragelund, Birthe Brandt, Jensen, M. K. & Skriver, Karen, 2012, In: Trends in Plant Science. 17, 11, p. 625-632 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae
Henriksen, P., Wagner, S. A., Weinert, B. T., Sharma, S., Bacinskaja, G., Rehman, M., Juffer, A. H., Walther, T. C., Lisby, Michael & Choudhary, Chunaram, 2012, In: Molecular & Cellular Proteomics. 11, 11, p. 1510-1522 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
RNF8 and RNF168 but not HERC2 are required for DNA damage-induced ubiquitylation in chicken DT40 cells
Østergaard, Vibe Hallundbæk, Pentzold, C., Pedersen, R. T., Iosif, S., Alpi, A., Bekker-Jensen, Simon Holst, Mailand, Niels & Lisby, Michael, 2012, In: D N A Repair. 11, 11, p. 892–905 14 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Receptor-like kinase complexes in plant innate immunity
Greeff, M. C., Roux, M. E., Mundy, J. & Petersen, Morten, 2012, In: Frontiers in Plant Science. 3, 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Regulation of basal resistance by a powdery mildew-induced cysteine-rich receptor-like protein kinase in barley
Rayapuram, C., Jensen, M. K., Maiser, F., Vikgren, E. L. J., Jensen, H. H., Rung, J. H., Gregersen, P. L., Schweizer, P., Collinge, David B. & Lyngkjær, M. F., 2012, In: Molecular Plant Pathology. 13, 2, p. 135-147 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Replication: DNA Building Block Synthesis On Demand
Holmberg, Christian & Nielsen, Olaf, 2012, In: Current Biology. 22, 8, p. R271-R272 2 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Selective and hyperactive uptake of foreign DNA by adaptive immune systems of an archaeon via two distinct mechanisms: [plus] Corrigendum
Erdmann, S. & Garrett, Roger Antony, 2012, In: Molecular Microbiology. 85, 6, p. 1044-1056 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The expression of one ankyrin pk2 allele of the WO prophage is correlated with the Wolbachia feminizing effect in isopods
Pichon, S., Bouchon, D., Liu, C., Chen, L. & Garrett, Roger Antony, 2012, In: B M C Microbiology. 12, 55, 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
2013
Published
A novel carboxyl-terminal protease derived from Paenibacillus lautus CHN26 exhibiting high activities at multiple sites of substrates
Li, Y., Pan, Y., She, Q. & Chen, L., 2013, In: B M C Biotechnology. 13, 13 p., 89.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
A novel interference mechanism by a type IIIB CRISPR-Cmr module in Sulfolobus
Deng, Ling, Garrett, Roger Antony, Shah, S. A., Peng, Xu & She, Q., 2013, In: Molecular Microbiology. 87, 5, p. 1088-1099 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana
Jensen, M. K., Lindemose, Søren, Masi, F. D., Reimer, J. J., Nielsen, M., Perera, V., Workman, C. T., Turck, F., Grant, M. R., Mundy, J., Petersen, Morten & Skriver, Karen, 2013, In: FEBS Open Bio. 3, p. 321-327 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Archaeal type II toxin-antitoxins
Shah, S. A. & Garrett, Roger Antony, 2013, Prokaryotic toxin-antitoxins. Gerdes, K. (ed.). Springer, p. 225-238 14 p.
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
Published
Biology, biodiversity and application potential of thermophilic viruses
Uldahl, K. B. & Peng, Xu, 2013, Thermophilic Microbes in Environmental and Industrial Biotechnology: Biotechnology of Thermophiles. Satyanarayana, T., Littlechild, J. & Kawarabayasi, Y. (eds.). Springer, p. 271-304 34 p.
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
Published
Catalase and NO CATALASE ACTIVITY1 promote autophagy-dependent cell death in Arabidopsis
Hackenberg, T., Juul, T., Auzina, A., Gwizdz, S., Malolepszy, A., Van Der Kelen, K., Dam, S., Bressendorff, Simon, Lorentzen, A. M., Roepstorff, P., Nielsen, K. L., Jorgensen, J., Hofius, D., Van Breusegem, F., Petersen, Morten & Andersen, S. U., 2013, In: Plant Cell. 25, 11, p. 4616-4626 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Characterising the CRISPR immune system in Archaea using genome sequence analysis
Shah, S. A., 2013, Department of Biology, Faculty of Science, University of Copenhagen. 219 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
Concerted action of the Ubiquitin-Fusion Degradation Protein 1 (Ufd1) and Sumo-Targeted Ubiquitin Ligases (STUbLs) in the DNA-damage response
Køhler, J. B., Jørgensen, M. L. M., Beinoraite, G., Thorsen, M. & Thon, Genevieve, 2013, In: P L o S One. 8, 11, 15 p., e80442.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Cyclic peptide inhibitors of the β-sliding clamp in Staphylococcus aureus
Kjelstrup, S., Hansen, P. M. P., Thomsen, Line Elnif, Hansen, Paul Robert & Løbner-Olesen, Anders, 2013, In: P L o S One. 8, 9, 13 p., e72273.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Discovery and seminal developments in the CRISPR field
Mojica, F. J. M. & Garrett, Roger Antony, 2013, CRISPR-Cas Systems: RNA-mediated Adaptive Immunity in Bacteria and Archaea. Barrangou, R. & van der Oost, J. (eds.). Springer VS, p. 1-31 31 p.
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
Published
Exposure to Cr(VI) induces organ dependent MSI in two loci related with photophosphorylation and with glutamine metabolism
Rodriguez, E., Azevedo de Silva, R., Remédios, C., Almeida, T., Fernandes, P. & Santos, C., 2013, In: Journal of Plant Physiology. 170, 5, p. 534-538 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Genetic determinants of PAM-dependent DNA targeting and pre-crRNA processing in Sulfolobus islandicus
Peng, W., Li, H., Hallstrøm, S., Peng, N., Liang, Y. X. & She, Q., 2013, In: R N A Biology. 10, 5, p. 1-11 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Genetic manipulation in Sulfolobus islandicus and functional analysis of DNA repair genes
Zhang, C., Tian, B., Li, S., Ao, X., Dalgaard, K., Gökce, S., Liang, Y. & She, Q., 2013, In: Biochemical Society Transactions. 41, 1, p. 405-410 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Genome Sequence of a Novel Archaeal Fusellovirus Assembled from the Metagenome of a Mexican Hot Spring
Servin-Garciduenas, L. E., Peng, Xu, Garrett, Roger Antony & Martinez-Romero, E., 2013, In: Genome Announcements. 1, p. 1-2 2 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Genome Sequence of a Novel Archaeal Rudivirus Recovered from a Mexican Hot Spring
Servín-Garcidueñas, L., Peng, Xu, Garrett, Roger Antony & Martínez-Romero, E., 2013, In: Genome Announcements. 1, 1, p. 1-2 2 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Genome Sequence of the Acidophilic Bacterium Acidocella sp. Strain MX-AZ02
Servín-Garcidueñas, L. E., Garrett, Roger Antony, Amils, R. & Martínez-Romero, E., 2013, In: Genome Announcements. 1, 1, p. 1-2 2 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Genome scale transcriptional response diversity among ten ecotypes of Arabidopsis thaliana during heat stress
Barah, P., Jayavelu, N. D., Mundy, J. & Bones, A. M., 2013, In: Frontiers in Plant Science. 4, 10 p., 532.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Genome-scale cold stress response regulatory networks in ten Arabidopsis thaliana ecotypes
Barah, P., Jayavelu, N. D., Rasmussen, Simon, Nielsen, H. B., Mundy, J. & Bones, A. M., 2013, In: B M C Genomics. 14, 16 p., 722 .
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Genomics and genetics of Sulfolobus islandicus LAL14/1, a model hyperthermophilic archaeon
Jaubert, C., Danioux, C., Oberto, J., Cortez, D., Bize, A., Krupovic, M., She, Q., Forterre, P., Prangishvili, D. & Sezonov, G., 2013, In: Open Biology. 3, 4, 19 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
HemaExplorer: a database of mRNA expression profiles in normal and malignant haematopoiesis
Bagger, F. O., Rapin, N. P. J., Theilgaard-Mønch, Kim, Kaczkowski, B., Thorén, L. A. M., Jendholm, L. J., Winther, Ole & Porse, Bo Torben, 2013, In: Nucleic Acids Research. 41, Database issue, p. D1034-D1039 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Knockouts of RecA-Like proteins RadC1 and RadC2 have distinct responses to DNA damage agents in Sulfolobus islandicus
Liang, P., Han, W., Huang, Q., Li, Y., Ni, J., She, Q. & Shen, Y., 2013, In: Journal of Genetics and Genomics. 40, 10, p. 533-542 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
MRX protects fork integrity at protein-DNA barriers, and its absence causes checkpoint activation dependent on chromatin context
Bentsen, I. B., Nielsen, I., Lisby, Michael, Nielsen, H. B., Sen Gupta, S., Mundbjerg, K., Andersen, A. H. & Bjergbaek, L., 2013, In: Nucleic Acids Research. 41, 5, p. 3173-3189 17 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Molecular cloning and antimicrobial activity of enterolysin A and helveticin J of bacteriolysins from metagenome of Chinese traditional fermented foods
Zhang, T., Pan, Y., Li, B., Ou, J., Zhang, J., Chen, Y., Peng, Xu & Chen, L., 2013, In: Food Control. 31, 2, p. 499-507 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Molecular cloning of a novel bioH gene from an environmental metagenome encoding a carboxylesterase with exceptional tolerance to organic solvents
Shi, Y., Pan, Y., Li, B., He, W., She, Q. & Chen, L., 2013, In: B M C Biotechnology. 13, 11 p., 13.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
New aspects of protein stability and turnover in the regulation of genome integrity: the role of Cmr1 and Rad56
Gallina, I., 2013, Department of Biology, Faculty of Science, University of Copenhagen. 195 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
Novel insights into gene regulation of the rudivirus SIRV2 infecting Sulfolobus cells
Okutan, E., Deng, Ling, Mirlashari, S., Uldahl, K., Halim, M., Liu, C., Garrett, Roger Antony, She, Q. & Peng, Xu, 2013, In: R N A Biology. 10, 5, p. 1-11 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Protein dielectric constants determined from NMR chemical shift perturbations
Kukic, P., Farrell, D., McIntosh, L. P., García-Moreno E., B., Jensen, K. S., Toleikis, Z., Teilum, Kaare & Nielsen, J. E., 2013, In: Journal of the American Chemical Society. 135, 45, p. 16968–16976 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Protein structure validation and refinement using amide proton chemical shifts derived from quantum mechanics
Christensen, A. S., Linnet, T. E., Borg, M., Boomsma, Wouter, Lindorff-Larsen, Kresten, Hamelryck, Thomas Wim & Jensen, Jan Halborg, 2013, In: PLoS ONE. 8, 12, 10 p., e84123.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Protospacer recognition motifs: Mixed identities and functional diversity
Shah, S. A., Erdmann, S., Mojica, F. J. M. & Garrett, Roger Antony, 2013, In: R N A Biology. 10, 5, p. 1-9 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
RNAi screening for characterisation of ER-associated degradation pathways in mammalian cells
Månsson, M. D. J., 2013, Department of Biology, Faculty of Science, University of Copenhagen.
Research output: Book/Report › Ph.D. thesis › Research
Published
RPA coordinates DNA end resection and prevents formation of DNA hairpins
Chen, H., Lisby, Michael & Symington, L. S., 2013, In: Molecular Cell. 50, 4, p. 589-600 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
SMV1 virus-induced CRISPR spacer acquisition from the conjugative plasmid pMGB1 in Sulfolobus solfataricus P2
Erdmann, S., Shah, S. A. & Garrett, Roger Antony, 2013, In: Biochemical Society Transactions. 41, 6, p. 1449-1458 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Solution properties of the archaeal CRISPR DNA repeat-binding homeodomain protein Cbp2
Kenchappa, C., Heiðarsson, P. O., Kragelund, Birthe Brandt, Garrett, Roger Antony & Poulsen, F., 2013, In: Nucleic Acids Research. 41, 5, p. 3424-3435 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Spd1 accumulation causes genome instability independently of ribonucleotide reductase activity but functions to protect the genome when deoxynucleotide pools are elevated
Fleck, O., Vejrup-Hansen, R., Watson, A., Carr, A. M., Nielsen, Olaf & Holmberg, Christian, 2013, In: Journal of Cell Science. 126, p. 4985-4994 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Specificity and function of Archaeal DNA replication initiator proteins
Samson, R., Xu, Y., Gadelha, C., Stone, T., Faqiri, J., Li, D., Qin, N., Pu, F., Liang, Y., She, Q. & Bell, S., 2013, In: Cell Reports. 3, 2, p. 485-496 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Structure, function and networks of transcription factors involved in abiotic stress responses
Lindemose, Søren, O'Shea, Charlotte, Jensen, M. K. & Skriver, Karen, 2013, In: International Journal of Molecular Sciences (Online). 14, 3, p. 5842-78 37 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Studies of archaeal virus-host systems in thermal environments
Erdmann, S., 2013, Department of Biology, Faculty of Science, University of Copenhagen. 147 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
Subnuclear relocalization and silencing of a chromosomal region by an ectopic ribosomal DNA repeat
Jakociunas, T., Domange Jordö, M. E., Mebarek, M. A., Bünner, C. M., Hansen, J. V., Oddershede, L. B. & Thon, Genevieve, 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 47, p. E4465-E4473 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
T_lys, a newly identified Sulfolobus spindle-shaped virus 1 transcript expressed in the lysogenic state, encodes a DNA-binding protein interacting at the promoters of the early genes
Fusco, S., She, Q., Bartolucci, S. & Contursi, P., 2013, In: Journal of Virology. 87, 10, p. 5926-5936 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The PCNA interaction protein box sequence in Rad54 is an integral part of its ATPase domain and is required for efficient DNA repair and recombination
Burgess, R. C., Sebesta, M., Sisakova, A., Marini, V. P., Lisby, Michael, Damborsky, J., Klein, H., Rothstein, R. & Krejci, L., 2013, In: PLoS ONE. 8, 12, p. e82630 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The alkaloid compound harmane increases the lifespan of Caenorhabditis elegans during bacterial infection, by modulating the nematode's innate immune response
Jakobsen, H., Bojer, Martin Saxtorph, Marinus, M. G., Xu, T., Struve, C., Krogfelt, K. A. & Løbner-Olesen, Anders, 2013, In: P L o S One. 8, 3, 8 p., e60519.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The role of C/EBPa in PD-1+ CD4+ T cells & modulation of RNR activity prolongs survival of mice with AML
Norrie, I. C., 2013, Department of Biology, Faculty of Science, University of Copenhagen. 118 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
Transcriptome responses to combinations of stresses in Arabidopsis
Rasmussen, S., Barah, P., Suarez Rodriguez, M. C., Bressendorff, Simon, Friis, P., Costantino, P., Bones, A. M., Nielsen, H. B. & Mundy, J., 2013, In: Plant Physiology. 161, 4, p. 1783-1794 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Transcriptomic analysis of the SSV2 infection of Sulfolobus solfataricus with and without the integrative plasmid pSSVi
Ren, Y., She, Q. & Huang, L., 2013, In: Virology. 441, 2, p. 126-134 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Two portable recombination enhancers direct donor choice in fission yeast heterochromatin
Jakociunas, T., Holm, L. R., Hansen, J. V., Trusina, Ala & Thon, Genevieve, 2013, In: P L o S Genetics. 9, 10, 14 p., e1003762.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Volume of Hsp90 ligand binding and the unfolding phase diagram as a function of pressure and temperature
Petrauskas, V., Gylyte, J., Toleikis, Z., Cimmperman, P. & Matulis, D., 2013, In: European Biophysics Journal. 42, 5, p. 355-362 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Rapid selection of Plasmodium falciparum chloroquine resistance transporter gene and multidrug resistance gene-1 haplotypes associated with past chloroquine and present artemether-lumefantrine use in Inhambane District, southern Mozambique
Thomsen, T. T., Madsen, L. B., Hansson, Helle Smedegaard, Tomás, E. V. E., Charlwood, D., Bygbjerg, Ib Christian & Alifrangis, Michael, Mar 2013, In: American Journal of Tropical Medicine and Hygiene. 88, 3, p. 536-41 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Physical mapping and cloning of RAD56
Mathiasen, D. P., Gallina, I., Germann, S. M., Hamou, W., Eléouët, M., Thodberg, S., Eckert-Boulet, N., Game, J. & Lisby, Michael, 25 Apr 2013, In: Gene. 519, 1, p. 182-186 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse
Orlando, L. A. A., Ginolhac, A., Zhang, G., Froese, D., Albrechtsen, A., Stiller, M., Schubert, M., Cappellini, E., Petersen, B., Moltke, I., Johnson, P. L. F., Fumagalli, M., Mouatt, J. T. V., Raghavan, M., Korneliussen, T. S., Malaspinas, A. S., Vogt, J., Szklarczyk, D. M., Kelstrup, C., Vinther, J. & 36 others, Dolocan, A., Stenderup, Jesper Tandberg, Velazquez, A. M. V., Cahill, J., Rasmussen, M., Wang, X., Min, J., Zazula, G. D., Seguin-Orlando, A., Mortensen, C., Magnussen, K., Thompson, J. F., Weinstock, J., Gregersen, K., Røed, K. H., Eisenmann, V., Rubin, C. J., Miller, D. C., Antczak, D. F., Bertelsen, M. F., Brunak, S., Al-Rasheid, K. A. S., Ryder, O., Andersson, L., Mundy, J., Krogh, Anders, Gilbert, M Thomas P, Kjær, Kurt H., Sicheritz-Pontén, T., Jensen, Lars Juhl, Olsen, Jesper Velgaard, Hofreiter, M., Nielsen, R., Shapiro, B., Wang, J. & Willerslev, Eske, 4 Jul 2013, In: Nature. 499, 7456, p. 74-78 5 p.
Research output: Contribution to journal › Letter › Research › peer-review
2014
Published
A backward view from 16S rRNA to archaea to the universal tree of life to progenotes Reminiscences of Carl Woese
Garrett, Roger Antony, 2014, In: R N A Biology. 11, 3, p. 232-235 4 p.
Research output: Contribution to journal › Review › Research › peer-review
Published
A novel single-tailed fusiform Sulfolobus virus STSV2 infecting model Sulfolobus species
Erdmann, S., Chen, B., Huang, X., Deng, Ling, Liu, C., Shah, S. A., Bauer, S. L. M., León Sobrino, C., Wang, H., Wei, Y., She, Q., Garrett, Roger Antony, Huang, L. & Lin, L., 2014, In: Extremophiles. 18, 1, p. 51-60 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Adenosine triphosphatases of thermophilic archaeal double-stranded DNA viruses
Happonen, L. J., Erdmann, S., Garrett, Roger Antony & Butcher, S. J., 2014, In: Cell & Bioscience. 4, 37, p. 37-52 16 p.
Research output: Contribution to journal › Review › Research › peer-review
Published
Antibiotic selection of Escherichia coli sequence type 131 in a mouse intestinal colonization model
Hertz, F. B., Løbner-Olesen, Anders & Frimodt-Møller, N., 2014, In: Antimicrobial Agents and Chemotherapy. 58, 10, p. 6139-6144 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Arabidopsis accelerated cell death 11, ACD11, is a ceramide-1-phosphate transfer protein and intermediary regulator of phytoceramide levels
Simanshu, D. K., Zhai, X., Munch, D., Hofius, D., Markham, J. E., Bielawski, J., Bielawska, A., Malinina, L., Molotkovsky, J. G., Mundy, J. W., Patel, D. J. & Brown, R. E., 2014, In: Cell Reports. 6, 2, p. 388-399 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Aspects of ribonucleotide reductase regulation and genome stability: a study of human ribonucleotide reductase ssing fission yeast as a model
Nielsen, H. B. N., 2014, Department of Biology, Faculty of Science, University of Copenhagen. 149 p.
Research output: Book/Report › Ph.D. thesis › Research
Published
Autophagy and Retromer Components in Plant Innate Immunity
Munch, D., 2014, Department of Biology, Faculty of Science, University of Copenhagen.
Research output: Book/Report › Ph.D. thesis › Research
Published
Autophagy deficiency leads to accumulation of ubiquitinated proteins, ER stress, and cell death in Arabidopsis
Munch, D., Rodriguez, E., Bressendorff, Simon, Park, O. K., Hofius, D. & Petersen, Morten, 2014, In: Autophagy. 10, 9, p. 1579-1587 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Bactericidal antibiotics increase hydroxyphenyl fluorescein signal by altering cell morphology
Paulander, W., Wang, Y., Folkesson, A., Charbon, Godefroid, Løbner-Olesen, Anders & Ingmer, Hanne, 2014, In: P L o S One. 9, 3, 4 p., e92231.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
C/EBPα is dispensable for the ontogeny of PD-1+ CD4+ memory T cells but restricts their expansion in an age-dependent manner
Norrie, I. C., Ohlsson, E., Nielsen, Olaf, Hasemann, M. S. & Porse, Bo Torben, 2014, In: P L o S One. 9, 1, p. 1-9 9 p., e84728.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
CRISPR adaptive immune systems of Archaea
Vestergaard, G. A., Garrett, Roger Antony & Shah, S. A., 2014, In: R N A Biology. 11, 2, p. 157-168 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci
Alkhnbashi, O. S., Costa, F., Shah, S. A., Garrett, Roger Antony, Saunders, S. J. & Backofen, R., 2014, In: Bioinformatics. 30, 17, p. i489-i496 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Cell cycle regulation of homologous recombination in Saccharomyces cerevisiae
Mathiasen, D. P. & Lisby, Michael, 2014, In: F E M S Microbiology Reviews. 38, 2, p. 172-184 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Characterization of pMC11, a plasmid with dual origins of replication isolated from Lactobacillus casei MCJ and construction of shuttle vectors with each replicon
Chen, Z., Lin, J., Ma, C., Zhao, S., She, Q. & Liang, Y., 2014, In: Applied Microbiology and Biotechnology. 98, 13, p. 5977-5989 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
DNA Methylation
Marinus, M. G. & Løbner-Olesen, Anders, 2014, Synthesis and Processing of Macromolecules. Lovett, S. T. (ed.). ASM Press, (EcoSal Plus: Domain 4).
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
Published
DNA secondary structures are associated with recombination in major Plasmodium falciparum variable surface antigen gene families
Sander, Adam F. , Lavstsen, Thomas, Rask, T. S., Lisby, Michael, Salanti, Ali, Fordyce, S. L., Jespersen, Jakob Schmidt, Carter, R., Deitsch, K. W., Theander, Thor Grundtvig, Pedersen, A. G. & Arnot, D. E., 2014, In: Nucleic Acids Research. 42, 4, p. 2270-81 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
First experimental evidence for the presence of a CRISPR toxin in Sulfolobus
He, F., Chen, L. & Peng, Xu, 2014, In: Journal of Molecular Biology. 426, 22, p. 3683-3688 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Flavour Compounds in Fungi: Flavour Analysis in Ascomycetes and the Contribution of the Ehrlich Pathway to Flavour Production in Saccharomyces cerevisiae and Ashbya gossypii
Ravasio, D. A., 2014, Department of Biology, Faculty of Science, University of Copenhagen.
Research output: Book/Report › Ph.D. thesis › Research
Published
Genetic basis for Saccharomyces cerevisiae biofilm in liquid medium
Andersen, K. S., Bojsen, R. K., Sørensen, L. G. R., Weiss Nielsen, M., Lisby, Michael, Folkesson, A. & Regenberg, Birgitte, 2014, In: G3: Genes, Genomes, Genetics (Bethesda). 4, 9, p. 1671-1680 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review

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Receptor-like kinase complexes in plant innate immunity
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MAP kinase cascades in Arabidopsis innate immunity
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relax: the analysis of biomolecular kinetics and thermodynamics using NMR relaxation dispersion data
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